mRNA_P-wetherbeei_contig17287.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17287.1.1
Unique NamemRNA_P-wetherbeei_contig17287.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A536YE97_9PROT (Thioredoxin family protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YE97_9PROT)

HSP 1 Score: 147 bits (371), Expect = 8.350e-44
Identity = 70/104 (67.31%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
            +A+  +YA  EP R E++ALPGATL+EFGSP+CG C RAQPL+ QALA H+ +RHIKIADA GRRLGRSY VK WPTLVFLRDG E AR+VRP + A I + LA
Sbjct:    1 MALTTDYAQTEPKRQEVDALPGATLVEFGSPWCGWCRRAQPLIAQALAAHSGVRHIKIADASGRRLGRSYGVKLWPTLVFLRDGKETARLVRPDKSAEISDALA 104          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A1I1J3G7_9BURK (Thioredoxin 1 n=2 Tax=Cupriavidus TaxID=106589 RepID=A0A1I1J3G7_9BURK)

HSP 1 Score: 144 bits (364), Expect = 1.130e-42
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
            ++M + +AA EPTRAEI+ALPGATLLEFG+P+CG C+RAQPL+E A   H A+RHIK+ D  GR LGRS+ VK WPTLVFLRDG EVAR+VRP +  AI E +A
Sbjct:    1 MSMTKAFAATEPTRAEIDALPGATLLEFGAPWCGFCMRAQPLIETAFGKHPAIRHIKVEDGSGRPLGRSFRVKLWPTLVFLRDGQEVARLVRPADAQAIAEAMA 104          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A7X6DHH9_9BURK (Thioredoxin family protein n=1 Tax=Ramlibacter lithotrophicus TaxID=2606681 RepID=A0A7X6DHH9_9BURK)

HSP 1 Score: 144 bits (362), Expect = 2.020e-42
Identity = 69/105 (65.71%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVA 321
            MN  YA  EP+RAE++ALPG TLLEFG+P+CG C  AQPL+ QALA H  LRH+K+ D  GR LGRSY VK WPTL+FLRDG EVAR+VRPQ+ AA+ E LA +A
Sbjct:    1 MNTAYAQREPSRAEVDALPGPTLLEFGAPWCGWCRGAQPLIGQALAAHPGLRHLKVEDGSGRPLGRSYRVKLWPTLIFLRDGEEVARLVRPQDAAAVGEALARIA 105          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: Q0K1R8_CUPNH (Thioredoxin n=30 Tax=Proteobacteria TaxID=1224 RepID=Q0K1R8_CUPNH)

HSP 1 Score: 143 bits (360), Expect = 3.830e-42
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVA 321
            M ++YAA EPTR E++ALPGAT+LEFG+P+CG+C RAQP L +A A H ALRH+KI D  GRRLGRS+ +K WPTLVFLRDG EVAR+VRP E   I E +  +A
Sbjct:    3 MTQQYAATEPTRTEVDALPGATVLEFGAPWCGYCQRAQPALAEAFAVHPALRHLKIEDGSGRRLGRSFHIKLWPTLVFLRDGQEVARLVRPTESEPIREAMRRIA 107          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A254TH49_9BURK (Thioredoxin n=1 Tax=Noviherbaspirillum denitrificans TaxID=1968433 RepID=A0A254TH49_9BURK)

HSP 1 Score: 142 bits (358), Expect = 7.730e-42
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVA 321
            MN++YA  EP RAE++ALPG T++EFG+P+CG C+ AQPL+EQA A H ++RHIKI D  GR LGRSY +K WPTLVFL+DGVEVAR+VRP + A I + LA +A
Sbjct:    3 MNKDYAESEPPRAEVDALPGPTVVEFGAPWCGFCIGAQPLIEQAFAGHDSVRHIKIEDGPGRSLGRSYRIKLWPTLVFLKDGVEVARLVRPSDAATIRQALAQIA 107          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A5C8A1G3_9BURK (Thioredoxin n=1 Tax=Cupriavidus sp. TaxID=1873897 RepID=A0A5C8A1G3_9BURK)

HSP 1 Score: 142 bits (358), Expect = 8.470e-42
Identity = 67/104 (64.42%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
            ++MN+ +AA EP RAEI+ALPGATLLEFG+P+CG C+RAQPL+E A A H ++RH+KI DA GR LGRS+ VK WPTLVFLRDG EVAR+VRP +   I   +A
Sbjct:    1 MSMNKTFAATEPARAEIDALPGATLLEFGAPWCGFCMRAQPLIEAAFAAHPSIRHLKIEDASGRPLGRSFRVKLWPTLVFLRDGQEVARLVRPADADEIARAMA 104          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A177QZZ9_9PROT (Thioredoxin n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QZZ9_9PROT)

HSP 1 Score: 139 bits (351), Expect = 8.470e-41
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
            MN  YA  EP R E++AL G TLLEFGSP+CG+C RAQPLL  AL  H  +RH+KIADA GRRLGRSY VK WPTLVFL+DG E+ R+VRP + A ID  LA
Sbjct:    1 MNPRYAEKEPRREEVDALAGPTLLEFGSPWCGYCRRAQPLLASALVEHPDVRHLKIADASGRRLGRSYGVKLWPTLVFLKDGREIERLVRPHDQAEIDAALA 102          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: UPI001CAAC132 (thioredoxin family protein n=1 Tax=Cupriavidus pampae TaxID=659251 RepID=UPI001CAAC132)

HSP 1 Score: 139 bits (350), Expect = 1.440e-40
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACV 318
            ++M + +AA EP R EI+AL GATLLEFG+P+CG C+RAQPL+E A A H +LRH+KI D  GR LGRS+ VK WPTLVFLRDG EVAR+VRP +  AI E +A +
Sbjct:    1 MSMTKTFAATEPARTEIDALSGATLLEFGAPWCGFCMRAQPLIETAFAGHPSLRHVKIEDGSGRPLGRSFRVKLWPTLVFLRDGQEVARLVRPTDANAIAEAMASI 106          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A1F4G159_9PROT (Thiol reductase thioredoxin n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4G159_9PROT)

HSP 1 Score: 139 bits (349), Expect = 1.870e-40
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVAS 324
            +AMN +YA  EPTRAE++AL G  ++EFGSP+CG+C RAQP + +ALA H  +RHIKIADA GR LGRS+ VK WPTLVFL+DG E+AR VRP + A I +GLA + S
Sbjct:    1 MAMNTDYADKEPTRAEVDALQGPAVVEFGSPWCGYCRRAQPFIAEALADHPRVRHIKIADASGRWLGRSFEVKLWPTLVFLKDGKELARAVRPVDAAEIKKGLAKIDS 108          
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: UPI001E5C694B (thioredoxin family protein n=1 Tax=Pseudogulbenkiania sp. MAI-1 TaxID=990370 RepID=UPI001E5C694B)

HSP 1 Score: 139 bits (349), Expect = 1.870e-40
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
            MN +YA  EP RAEI+AL G  LLEFG+P+CGHC  AQPLL  ALA H  +RHIKI D RGRRLGRS+ VK WPTLVFLRDG EVAR+VRP +  +I   LA
Sbjct:    1 MNTDYAWSEPPRAEIDALAGPVLLEFGAPWCGHCQAAQPLLATALAAHPGVRHIKIEDGRGRRLGRSFGVKLWPTLVFLRDGQEVARLVRPDDAESIGRALA 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A536YE97_9PROT8.350e-4467.31Thioredoxin family protein n=2 Tax=Betaproteobacte... [more]
A0A1I1J3G7_9BURK1.130e-4265.38Thioredoxin 1 n=2 Tax=Cupriavidus TaxID=106589 Rep... [more]
A0A7X6DHH9_9BURK2.020e-4265.71Thioredoxin family protein n=1 Tax=Ramlibacter lit... [more]
Q0K1R8_CUPNH3.830e-4263.81Thioredoxin n=30 Tax=Proteobacteria TaxID=1224 Rep... [more]
A0A254TH49_9BURK7.730e-4262.86Thioredoxin n=1 Tax=Noviherbaspirillum denitrifica... [more]
A0A5C8A1G3_9BURK8.470e-4264.42Thioredoxin n=1 Tax=Cupriavidus sp. TaxID=1873897 ... [more]
A0A177QZZ9_9PROT8.470e-4165.69Thioredoxin n=1 Tax=Betaproteobacteria bacterium S... [more]
UPI001CAAC1321.440e-4062.26thioredoxin family protein n=1 Tax=Cupriavidus pam... [more]
A0A1F4G159_9PROT1.870e-4062.04Thiol reductase thioredoxin n=1 Tax=Betaproteobact... [more]
UPI001E5C694B1.870e-4066.67thioredoxin family protein n=1 Tax=Pseudogulbenkia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17287contigP-wetherbeei_contig17287:198..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog381666.H16_B1266
PFAMsThioredoxin
Model size342
Max annot lvl28216|Betaproteobacteria
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.81e-43
EggNOG OGsCOG0526@1|root,COG0526@2|Bacteria,1MZ6D@1224|Proteobacteria,2VU4B@28216|Betaproteobacteria,1K8QX@119060|Burkholderiaceae
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-16_002760.1
DescriptionThioredoxin
Cds size336
COG categoryCO
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.6519256-CDS-P-wetherbeei_contig17287:197..5331683186112.6519256-CDS-P-wetherbeei_contig17287:197..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17287 198..533 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.6618001-UTR-P-wetherbeei_contig17287:533..5391683186112.6618001-UTR-P-wetherbeei_contig17287:533..539Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17287 534..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17287.1.1prot_P-wetherbeei_contig17287.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17287 198..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17287.1.1

>prot_P-wetherbeei_contig17287.1.1 ID=prot_P-wetherbeei_contig17287.1.1|Name=mRNA_P-wetherbeei_contig17287.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAA
LRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEG
LACVASHTDAA*
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mRNA from alignment at P-wetherbeei_contig17287:198..539-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17287.1.1 ID=mRNA_P-wetherbeei_contig17287.1.1|Name=mRNA_P-wetherbeei_contig17287.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig17287:198..539- (Phaeothamnion wetherbeei SAG_119_79)
TTGGCGATGAACGAAGAGTACGCCGCGGTCGAACCGACGCGGGCCGAGAT AGAGGCTCTGCCCGGTGCCACGCTCCTGGAGTTCGGCAGTCCGTTCTGCG GCCATTGTCTGCGCGCCCAGCCGCTGCTTGAGCAAGCCTTGGCGCCCCAC GCAGCGCTACGTCACATCAAGATTGCCGATGCCCGCGGGCGGCGACTCGG GCGTTCTTATGCAGTGAAGCACTGGCCGACCCTGGTATTTCTGCGTGATG GCGTGGAGGTGGCACGCGTGGTGCGGCCGCAGGAGATGGCGGCCATTGAC GAAGGTCTCGCGTGCGTCGCGTCGCACACGGACGCAGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17287:198..539-

>mRNA_P-wetherbeei_contig17287.1.1 ID=mRNA_P-wetherbeei_contig17287.1.1|Name=mRNA_P-wetherbeei_contig17287.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig17287:198..539- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGAAGAGTACGCCGCGGTCGAACCGACGCGGGCCGAGATAGAGGC
TCTGCCCGGTGCCACGCTCCTGGAGTTCGGCAGTCCGTTCTGCGGCCATT
GTCTGCGCGCCCAGCCGCTGCTTGAGCAAGCCTTGGCGCCCCACGCAGCG
CTACGTCACATCAAGATTGCCGATGCCCGCGGGCGGCGACTCGGGCGTTC
TTATGCAGTGAAGCACTGGCCGACCCTGGTATTTCTGCGTGATGGCGTGG
AGGTGGCACGCGTGGTGCGGCCGCAGGAGATGGCGGCCATTGACGAAGGT
CTCGCGTGCGTCGCGTCGCACACGGACGCAGCCTGA
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