mRNA_P-wetherbeei_contig17269.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17269.1.3
Unique NamemRNA_P-wetherbeei_contig17269.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: A0A835YL74_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL74_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.500e-31
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:  576 HQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            ++AEADKIMQVKAAEAEAESKYLSGVGV+RQR+AIV GLRDSIHDFSS+I GTTPKDVMDLLLLTQYFDMLRD
Sbjct:  176 NKAEADKIMQVKAAEAEAESKYLSGVGVSRQRQAIVAGLRDSIHDFSSSIEGTTPKDVMDLLLLTQYFDMLRD 248
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BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: A0A6H5KP74_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP74_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.640e-30
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:  576 HQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            ++AEADKIMQVKAAEAEAESKYLSGVGV+RQRKAIVDGLRDS+ +F+ AI GT+PKDVMDLLLLTQYFDMLRD
Sbjct:   79 NKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRD 151
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BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: F0YP67_AURAN (PHB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP67_AURAN)

HSP 1 Score: 117 bits (292), Expect = 7.060e-29
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 3 
Query:  555 RPKSFQKHQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            R +   K +AEADKI QVKAAEA+AESKYLSGVGVARQR+AIV GL+DSI +FS  IAGTTPKDVMDLLLLTQYFDML+D
Sbjct:   58 RLREAAKEKAEADKITQVKAAEADAESKYLSGVGVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKD 137
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BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: D8LDT1_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.280e-28
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 3 
Query:  555 RPKSFQKHQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            R +    ++AEADKIMQVKAAEAEAESKYLSGVGV+RQRKAIVDGLRDS+ +F+ AI GT+PKDVMDLLLLTQYFDMLRD
Sbjct:  278 RMREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRD 357
[Close]
BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: A0A6H5KBQ9_9PHAE (PHB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBQ9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.400e-28
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 3 
Query:  576 HQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            ++AEADKIMQVKAAEAEAESKYLSGVGV+RQRKAIVDGLRDS+  FS  I GT+PKDVMDLLLLTQYFDMLRD
Sbjct:  244 NKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRD 316
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BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: A0A6S8S5L6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S5L6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.720e-28
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 3 
Query:  555 RPKSFQKHQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            R +   K +AEADKI+QVKAAEA+AESKYLSGVGVARQR+AIV GL+DSI +FS  IAGTTPKDVMDLLLLTQYFDML+D
Sbjct:  170 RLREAAKEKAEADKIVQVKAAEADAESKYLSGVGVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKD 249
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BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: A0A7S2BRL8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRL8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.210e-27
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 3 
Query:  555 RPKSFQKHQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            R K     +AEADK++ VKAAEA+AESKYLSGVGVARQRKAIVDGLRDSI  FS  + GTTPKDV+DLLLLTQYFDML++
Sbjct:  169 RMKEAASEKAEADKVLLVKAAEADAESKYLSGVGVARQRKAIVDGLRDSIKQFSGNVQGTTPKDVIDLLLLTQYFDMLKE 248
[Close]
BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: F0Y763_AURAN (PHB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y763_AURAN)

HSP 1 Score: 111 bits (278), Expect = 8.780e-26
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:  555 RPKSFQKHQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            R K   K +AE +K++ VK+AEAEAESKYLSGVGVARQRKAIVDGLR SI  FS  I GTTPKDV+DLLL+TQYFDML+D
Sbjct:  175 RLKDAAKEKAEGNKVLTVKSAEAEAESKYLSGVGVARQRKAIVDGLRGSISQFSGNIKGTTPKDVVDLLLITQYFDMLKD 254
[Close]
BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: A0A7S2W665_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W665_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.600e-25
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:  555 RPKSFQKHQAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD 794
            R K     +AEADKI  VK+AEA+AESKYLSGVGVA+QRKA+VDGLRDSI +FS  + G TPKDV+DLLLLTQYFDML+D
Sbjct:  171 RLKDANAEKAEADKIQMVKSAEADAESKYLSGVGVAKQRKALVDGLRDSIMEFSGDVDGATPKDVIDLLLLTQYFDMLKD 250
[Close]
BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Match: A0A7S3JWP4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWP4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.090e-25
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 3 
Query:  579 QAEADKIMQVKAAEAEAESKYLSGVGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLR 791
            +AEA+KI QVKAAEA+AESKYLSGVGVARQR+AIV GL+DSI++F+  IAGTTPKDVMDLLL+TQYFDML+
Sbjct:  178 KAEAEKITQVKAAEADAESKYLSGVGVARQRQAIVGGLQDSINEFAGEIAGTTPKDVMDLLLVTQYFDMLK 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17269.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YL74_9STRA5.500e-3190.41Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A6H5KP74_9PHAE2.640e-3086.30PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
F0YP67_AURAN7.060e-2978.75PHB domain-containing protein n=1 Tax=Aureococcus ... [more]
D8LDT1_ECTSI1.280e-2880.00PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBQ9_9PHAE2.400e-2886.30PHB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6S8S5L6_9STRA5.720e-2878.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2BRL8_9STRA8.210e-2775.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y763_AURAN8.780e-2673.75PHB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2W665_9STRA1.600e-2572.50Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3JWP4_9STRA2.090e-2580.28Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17269contigP-wetherbeei_contig17269:89..1278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDT1
Preferred nameHIR1
PFAMsBand_7
Model size794
Max annot lvl2759|Eukaryota
KEGG koko:K03129
KEGG Pathwayko03022,ko05016,ko05168,map03022,map05016,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0002239,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0012505,GO:0016020,GO:0019899,GO:0019900,GO:0019901,GO:0030054,GO:0031090,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043424,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055044,GO:0071944,GO:0098588,GO:0098805
Exons2
Evalue8.28e-32
EggNOG OGsCOG0330@1|root,KOG2620@2759|Eukaryota
Descriptionstress-induced mitochondrial fusion
Cds size294
COG categoryO
BRITEko00000,ko00001,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.3691247-UTR-P-wetherbeei_contig17269:88..5881683186112.3691247-UTR-P-wetherbeei_contig17269:88..588Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17269 89..588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.3781047-CDS-P-wetherbeei_contig17269:588..8311683186112.3781047-CDS-P-wetherbeei_contig17269:588..831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17269 589..831 +
1683186112.3858266-CDS-P-wetherbeei_contig17269:1227..12781683186112.3858266-CDS-P-wetherbeei_contig17269:1227..1278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17269 1228..1278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17269.1.3prot_P-wetherbeei_contig17269.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17269 589..1278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17269.1.3

>prot_P-wetherbeei_contig17269.1.3 ID=prot_P-wetherbeei_contig17269.1.3|Name=mRNA_P-wetherbeei_contig17269.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
MLANSCLLGPRLLSPLLFRPKSFQKHQAEADKIMQVKAAEAEAESKYLSG
VGVARQRKAIVDGLRDSIHDFSSAIAGTTPKDVMDLLLLTQYFDMLRD
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mRNA from alignment at P-wetherbeei_contig17269:89..1278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17269.1.3 ID=mRNA_P-wetherbeei_contig17269.1.3|Name=mRNA_P-wetherbeei_contig17269.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1190bp|location=Sequence derived from alignment at P-wetherbeei_contig17269:89..1278+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCACTGGTCACGGACCTGGAGCCGGACCGCCGCGTGAAGGACGCCAT
GAACGAGATCAACGCCAGCAAGCGCCTCCGAGAGGCTGCCCACAACAAGG
CGAGCCCTACCCTCCTGCTCACCCTGCCTGCCATCGGAATCTGTGCGCCT
GCCTGGCACCATGGGTTCTTTTGCCTGCCGCTGGCTTTCACTGTGCTTCA
AGGATGCGGTTGCTGGCTCGGAGGAAGTATCTTAAAAGGGGAGTTGGGCG
GGAGGGAGCATTGTTGGTTCCTGCTGTCCTAGGACGCACTTTGCTGTCGG
TTTTCTGACAACGTGGAAGACCAGAGAGAGAGGCCAGCGGCGTACCGGCG
CCGCCAAATACAAAAGATCAGAGGACCAAAAAAGGTTCTCCGTCGTACCG
CGGCAGCGGATTGCGGCGGCGTCCAGCCTCCCTCCAACCGGCGCATCGCC
CAGCCGCCCAACTAACTGTTGTGACTGCTGCTTGCTCTCGCTGCTGCTAT
ATGCTTGCTAACTCTTGCTTGCTGGGGCCTCGTTTGCTGTCGCCGTTGCT
GTTCCGCCCAAAATCTTTCCAAAAACACCAGGCGGAGGCGGACAAGATTA
TGCAGGTCAAGGCGGCCGAGGCGGAGGCCGAGTCCAAGTACCTGTCTGGC
GTCGGCGTAGCCCGCCAGCGCAAGGCCATCGTCGACGGACTCCGGGACTC
CATCCACGACTTTTCGTCGGCCATCGCCGGCACAACGCCGAAGGTGAGAG
AGCGATTGAGACAGAGAAAAAAGACAGAGGAAGAAAGGGGAAGAGAACGA
AAAAGAGGGAACCTCTTGGAGGCTCAAGGGAGGGAAAGATCCTTTTTGGT
GCTTAATCTTTTGCGGCAGGAAGGGTTGTTTCCGCTTATCAGTGGAGGAA
ATTCTCCGTTTGCCGCTTCTCCTTCCTTCTCTCTTATATCTCTTTTGTAA
CCGTTCCTTGGCTCCATATTTACCCCTTGGGCGATGTTGGGCCGCCGGGC
ACGGCCTTACTGCCATGCTGCCACTAATACCACTGCAGAATCGGCTTCTC
AGTGCAGTCCCTCGATGGCCACTCAACACCTTTTCTCCCTTCTCCCTTAT
GCTCCTCCGTTTTTCGCTACGGTTTTCCCTCAAAACCAGGATGTGATGGA
CTTGCTGCTCCTGACGCAGTACTTCGACATGCTGCGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17269:89..1278+

>mRNA_P-wetherbeei_contig17269.1.3 ID=mRNA_P-wetherbeei_contig17269.1.3|Name=mRNA_P-wetherbeei_contig17269.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig17269:89..1278+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGCTAACTCTTGCTTGCTGGGGCCTCGTTTGCTGTCGCCGTTGCT
GTTCCGCCCAAAATCTTTCCAAAAACACCAGGCGGAGGCGGACAAGATTA
TGCAGGTCAAGGCGGCCGAGGCGGAGGCCGAGTCCAAGTACCTGTCTGGC
GTCGGCGTAGCCCGCCAGCGCAAGGCCATCGTCGACGGACTCCGGGACTC
CATCCACGACTTTTCGTCGGCCATCGCCGGCACAACGCCGAAGGATGTGA
TGGACTTGCTGCTCCTGACGCAGTACTTCGACATGCTGCGCGAT
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