prot_P-wetherbeei_contig17262.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig17262.1.1
Unique Nameprot_P-wetherbeei_contig17262.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length206
Homology
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BLAST of mRNA_P-wetherbeei_contig17262.1.1 vs. uniprot
Match: A0A0U9HN80_KLENI (Transcription factor IIB n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HN80_KLENI)

HSP 1 Score: 57.8 bits (138), Expect = 2.960e-6
Identity = 53/202 (26.24%), Postives = 87/202 (43.07%), Query Frame = 0 
Query:    2 ACFEGVKDIAHDLRLHDSVAKDAIRLLKIADDENIFKRKAGASGDAMCGAALYLVCKQQGASRTFHEMSHAAGVPQGDITKRLRLLQKNDKLSEFAGGVVRPEHLVPRFCSLLDFQQWVSAAALHVAQKAGELHLNSGQQPQAMAAAALLLSAGAFGMLAGRSAKEVAEVTKAVADVCGAKPRTVSKGYAALYPHRYSLLSE 203
            + F  + ++A  L L  ++   A  + K   D    +   G S  A+CGA LY+ C+Q+  +R+F E+  A         K+      N        GVV     V RF S LD +     AA  V ++  + + + G+ P       + ++AG   ML+ +  ++     K V+   G    T+   YA LYP+R  L+ E
Sbjct: 1021 SAFRTISEMAERLNLVVAIKDRACEIYKEIQDSQSIR---GRSQAAICGACLYIACRQEEKARSFKEIGTATQAATVKEIKKCTAFVVNTLSKRM--GVVSAADYVRRFASNLDLKHKFVQAAEEVVRRF-DAYKDKGRSP-------ISVAAGVIFMLS-QLTEDDRRTWKEVSQASGVSEGTLKLSYADLYPYREQLIPE 1208
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17262.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0U9HN80_KLENI2.960e-626.24Transcription factor IIB n=1 Tax=Klebsormidium nit... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 106..124
score: 38.6
coord: 50..69
score: 39.0
coord: 140..156
score: 29.02
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 5..197
NoneNo IPR availableGENE3D1.10.472.10coord: 103..206
e-value: 2.1E-13
score: 52.2
NoneNo IPR availableGENE3D1.10.472.10coord: 1..91
e-value: 2.2E-17
score: 65.0
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 100..173
e-value: 2.1E-10
score: 40.4
coord: 5..89
e-value: 2.5E-12
score: 46.7
IPR013763Cyclin-likeCDDcd00043CYCLINcoord: 9..87
e-value: 0.00244247
score: 34.1365
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 101..198
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 5..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17262contigP-wetherbeei_contig17262:2..619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17262.1.1mRNA_P-wetherbeei_contig17262.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig17262 2..619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig17262.1.1 ID=prot_P-wetherbeei_contig17262.1.1|Name=mRNA_P-wetherbeei_contig17262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
TACFEGVKDIAHDLRLHDSVAKDAIRLLKIADDENIFKRKAGASGDAMCG
AALYLVCKQQGASRTFHEMSHAAGVPQGDITKRLRLLQKNDKLSEFAGGV
VRPEHLVPRFCSLLDFQQWVSAAALHVAQKAGELHLNSGQQPQAMAAAAL
LLSAGAFGMLAGRSAKEVAEVTKAVADVCGAKPRTVSKGYAALYPHRYSL
LSEGVK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR013150TFIIB_cyclin
IPR013763Cyclin-like
IPR036915Cyclin-like_sf