mRNA_P-wetherbeei_contig1726.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1726.2.1
Unique NamemRNA_P-wetherbeei_contig1726.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1726.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1726contigP-wetherbeei_contig1726:3896..5071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size577
Hectar predicted targeting categorysignal peptide
Exons3
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.1583023-UTR-P-wetherbeei_contig1726:3895..39421683186112.1583023-UTR-P-wetherbeei_contig1726:3895..3942Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1726 3896..3942 +
1683186112.1933463-UTR-P-wetherbeei_contig1726:4997..50711683186112.1933463-UTR-P-wetherbeei_contig1726:4997..5071Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1726 4998..5071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.1700048-CDS-P-wetherbeei_contig1726:3942..42301683186112.1700048-CDS-P-wetherbeei_contig1726:3942..4230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1726 3943..4230 +
1683186112.1777112-CDS-P-wetherbeei_contig1726:4535..45951683186112.1777112-CDS-P-wetherbeei_contig1726:4535..4595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1726 4536..4595 +
1683186112.1854718-CDS-P-wetherbeei_contig1726:4889..49971683186112.1854718-CDS-P-wetherbeei_contig1726:4889..4997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1726 4890..4997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1726.2.1prot_P-wetherbeei_contig1726.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1726 3943..4997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1726.2.1

>prot_P-wetherbeei_contig1726.2.1 ID=prot_P-wetherbeei_contig1726.2.1|Name=mRNA_P-wetherbeei_contig1726.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MFERLRVLRARGFIGAVLLGVFNAYLPRRAETVPTSQKRPLSVHPLTTAR
AQGCFCGLNKFLRLRLWKVVPFRDMAAAADTVFGEDYRHPDSTRKAAIRD
FVRHLFASNTEALNKKTNTDREMVAEFYTPELLERTQTTYRSDYSLFEQY
F*
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mRNA from alignment at P-wetherbeei_contig1726:3896..5071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1726.2.1 ID=mRNA_P-wetherbeei_contig1726.2.1|Name=mRNA_P-wetherbeei_contig1726.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1176bp|location=Sequence derived from alignment at P-wetherbeei_contig1726:3896..5071+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGTTCGTTACTGTCAGGCGACTGCGTTCCCAGTGGGGCCCAAACAATG
TTTGAACGCCTTCGCGTGCTGCGGGCCAGAGGCTTCATTGGTGCTGTTCT
CCTTGGGGTTTTCAATGCATATCTGCCTCGTCGTGCGGAGACGGTGCCCA
CATCGCAGAAACGTCCCCTGTCCGTCCATCCCCTCACGACCGCACGCGCA
CAGGGCTGCTTTTGCGGGCTGAACAAGTTTCTGCGGCTCCGGCTGTGGAA
GGTGGTTCCGTTCCGGGACATGGCAGCGGCGGCCGACACGGTCTTTGGGG
AAGACTACAGACACCCCGACTCCACGAGGAAGGCGGTGAGTGTGCACGTG
GGGAAAGCGGGTTCGCTTCCGCTGTGCCGCGCATGGCGGCAGGACAAACT
CTTGATGCGGCAGGACAAACTCTTGATGCTTAATGTAGGATTTGGAAGAG
AGGAGCCCTCGCCTGCCGCTTTCCCTTGCTTGCAGAGTTCTTTTAGGGCT
GCCTTCTCGCCAATGCGGGAGGCAGGGAATTGCAGCGGCCCGCTCGCTGC
CTCCTGCATCGTATGCTTGCTGCCCATGCATGTGTTTTCTCATCGGCGTT
GACACCTTCCGCCGCCGCGACACGCTGTCTGCGCCTGCAGGCGATTCGCG
ACTTTGTCAGACACCTCTTCGCCTCCAACACCGAGGCCTTAAACAAAAAG
GTGAGGGAAAGATTTTTTCTGCTGTTCTTTTCGTTCCTTTTTTCGTTTTC
CAATTTTCCTCTTTGGGAATGGATTCGCGCTGACAACACTTATGATTGCA
TACTTTTCGGCTTTTCCGGGGCTGCGGCGTTCTTCCCATGTCCTCGTTGA
GGCAAATTAAATTATTCTTTTTGGCTGTTCTCCAAGCCGTGGACGAAAAC
GGATTAATGAGTGCGGTGTTTGGCCTCTCTCTGACGCCGCCGCTGCCCCC
TTACCGTCGCTGCCGCTTAATACCGCCGCTGTCAACGCCGGCAGACAAAT
ACTGACAGGGAGATGGTCGCAGAGTTTTACACGCCCGAGCTGCTGGAGCG
GACACAAACGACGTATCGATCCGATTACTCGTTGTTCGAGCAATATTTCT
AGACCGGGGAGCTCGATTTACAGGCTCTTGATTTACGGCTTCGTTATATT
TTCATTAATACATTCTATTCGCTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1726:3896..5071+

>mRNA_P-wetherbeei_contig1726.2.1 ID=mRNA_P-wetherbeei_contig1726.2.1|Name=mRNA_P-wetherbeei_contig1726.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig1726:3896..5071+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGAACGCCTTCGCGTGCTGCGGGCCAGAGGCTTCATTGGTGCTGT
TCTCCTTGGGGTTTTCAATGCATATCTGCCTCGTCGTGCGGAGACGGTGC
CCACATCGCAGAAACGTCCCCTGTCCGTCCATCCCCTCACGACCGCACGC
GCACAGGGCTGCTTTTGCGGGCTGAACAAGTTTCTGCGGCTCCGGCTGTG
GAAGGTGGTTCCGTTCCGGGACATGGCAGCGGCGGCCGACACGGTCTTTG
GGGAAGACTACAGACACCCCGACTCCACGAGGAAGGCGGCGATTCGCGAC
TTTGTCAGACACCTCTTCGCCTCCAACACCGAGGCCTTAAACAAAAAGAC
AAATACTGACAGGGAGATGGTCGCAGAGTTTTACACGCCCGAGCTGCTGG
AGCGGACACAAACGACGTATCGATCCGATTACTCGTTGTTCGAGCAATAT
TTCTAG
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