mRNA_P-wetherbeei_contig1724.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1724.1.1
Unique NamemRNA_P-wetherbeei_contig1724.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: A0A835YPH8_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.560e-20
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   40 MAENFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIK-TRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRSQMR 285
            MA   T EQ +A I Q + + +Q ++QEL   LT  CF KC K ++G+RLD+GEQ CLA+CMDRY+DTM +VNKAVVDR   R
Sbjct:    1 MATGITQEQADAFIAQTRMQAEQASMQELLSKLTSTCFTKCAKPSKGDRLDSGEQSCLALCMDRYVDTMQLVNKAVVDRQDRR 83
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: D7FT03_ECTSI (Mitochondrial import inner membrane translocase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT03_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.720e-18
Identity = 40/73 (54.79%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   61 EQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTR-GERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRS 276
            EQQ+A+I+Q+Q++ Q +A+QEL   +T +CF +C KT  G+R+++ EQ CLAMCMDRY+DTMG+VNKA+V ++
Sbjct:    8 EQQQAIIQQLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKA 80
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: W7T8J9_9STRA (Mitochondrial import inner membrane translocase subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T8J9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.460e-16
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   40 MAENFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRSQMR 285
            MA+  TP+QQEA+I + + E   +A+QEL Q +T KCF       G RLD+ EQ C+AMCMDRYI+TM +V  ++ +RS  R
Sbjct:   33 MAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSXXTGKSGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR 114
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: A0A067C1J1_SAPPC (Mitochondrial import inner membrane translocase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C1J1_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   49 NFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRSQ 279
            N T +Q++ +I Q++ E QQ+A+QEL ++L  KCF KCI    +RLD  +Q+CL++C++RYIDTM IV+ A+  R Q
Sbjct:    5 NLTSQQKDEIIAQVRMEVQQQAMQELTKALQEKCFNKCITRPQDRLDNKQQQCLSLCVERYIDTMKIVSGAIQQRGQ 81
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: K3WST5_GLOUD (Mitochondrial import inner membrane translocase subunit n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WST5_GLOUD)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:   46 ENFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDR 273
            +NFT  Q+  LI +++ E QQ+A+QEL Q+L  KCF KCI     +LD+ +Q CLA+C++RYIDTM +V++A+V R
Sbjct:    4 QNFTAAQKNELIMRVRSEVQQQALQELTQNLQEKCFDKCITRPAGKLDSKQQNCLALCINRYIDTMKVVSEAMVQR 79
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: W4G3K0_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3K0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.490e-14
Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   49 NFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRSQ 279
            N T +Q+  +I +++ E QQ+ +QEL Q++  KCF KC+    ERLD+ +Q+CL+MC++RYIDTM +V+ +++ R Q
Sbjct:    5 NLTAQQKNEVIARVRAEVQQQGLQELTQAVQEKCFNKCVTRPQERLDSKQQQCLSMCIERYIDTMKVVSASMMQRGQ 81
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: A0A154PK30_DUFNO (Mitochondrial import inner membrane translocase subunit n=3 Tax=Halictidae TaxID=77572 RepID=A0A154PK30_DUFNO)

HSP 1 Score: 74.3 bits (181), Expect = 2.520e-14
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   49 NFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRSQ 279
            + T  Q++ L+ Q++Q+      QEL   +T KCFKKCI   G  LD+ EQ+C+AMCMDRY+DT  +V+KA  DR Q
Sbjct:    8 SLTSSQKDELMEQIRQQIAVANAQELLTKMTEKCFKKCINKPGTTLDSSEQKCVAMCMDRYMDTFNLVSKAYSDRLQ 84
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: A0A6G0XIA0_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIA0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.950e-14
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   49 NFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDR 273
            N +P+Q+  +I +++ E QQ+  QEL Q++  KCF KCI    ERLD+ +Q+CL++C++RYIDTM +V+ A+  R
Sbjct:    5 NLSPQQKNEVIARIRAEVQQQGFQELTQAVQEKCFNKCITRPQERLDSKQQQCLSLCIERYIDTMKVVSSAMTSR 79
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: M4C105_HYAAE (Mitochondrial import inner membrane translocase subunit n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C105_HYAAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.250e-13
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   49 NFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRS-QMR*IDGAMARKKGKRAG 330
            NFTP+Q+  L+       +Q+A+QEL Q+L  KCF KCI     +LD  +Q CLA+C++RYIDTM +V++A+V R  Q +   G + +++G R G
Sbjct:    5 NFTPQQKTELV------NRQQALQELTQNLQEKCFDKCISRPSGKLDGKQQNCLALCINRYIDTMKVVSEAMVQRGPQEKKALGGVRQRRGVRHG 93
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BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Match: M1V6H8_CYAM1 (Mitochondrial import inner membrane translocase subunit n=2 Tax=cellular organisms TaxID=131567 RepID=M1V6H8_CYAM1)

HSP 1 Score: 72.0 bits (175), Expect = 1.680e-13
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   46 ENFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLDTGEQECLAMCMDRYIDTMGIVNKAVVDRSQ 279
            +  TP Q+  L  +++ E  ++A Q+L Q +T KCF+KC+      L +GEQ CLA C+DRYI++MG+V+KA+++R Q
Sbjct:    5 DQLTPSQRAELEDRVRNEMLRQAFQDLVQRVTEKCFEKCVTKPSATLTSGEQTCLAKCVDRYIESMGVVSKAMIERQQ 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1724.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPH8_9STRA1.560e-2055.42Mitochondrial import inner membrane translocase su... [more]
D7FT03_ECTSI3.720e-1854.79Mitochondrial import inner membrane translocase su... [more]
W7T8J9_9STRA5.460e-1648.78Mitochondrial import inner membrane translocase su... [more]
A0A067C1J1_SAPPC1.340e-1548.05Mitochondrial import inner membrane translocase su... [more]
K3WST5_GLOUD1.340e-1550.00Mitochondrial import inner membrane translocase su... [more]
W4G3K0_9STRA1.490e-1444.16Mitochondrial import inner membrane translocase su... [more]
A0A154PK30_DUFNO2.520e-1448.05Mitochondrial import inner membrane translocase su... [more]
A0A6G0XIA0_9STRA2.950e-1445.33Mitochondrial import inner membrane translocase su... [more]
M4C105_HYAAE1.250e-1343.16Mitochondrial import inner membrane translocase su... [more]
M1V6H8_CYAM11.680e-1343.59Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1724contigP-wetherbeei_contig1724:4060..4853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT03
Preferred nameTIMM13
PFAMszf-Tim10_DDP
Model size536
Max annot lvl2759|Eukaryota
KEGG koko:K17781
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
Exons2
Evalue2.53e-20
EggNOG OGsKOG1733@1|root,KOG1733@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial protein import TIM8.13 complex subunit, Tim8 homolog
Ec32 orthologEc-24_004310.1
Descriptionprotein import into mitochondrial inner membrane
Cds size249
COG categoryO
BRITEko00000,ko02000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.6843574-UTR-P-wetherbeei_contig1724:4059..43071683186111.6843574-UTR-P-wetherbeei_contig1724:4059..4307Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1724 4060..4307 -
1683186111.7163775-UTR-P-wetherbeei_contig1724:4814..48531683186111.7163775-UTR-P-wetherbeei_contig1724:4814..4853Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1724 4815..4853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.698003-CDS-P-wetherbeei_contig1724:4307..45081683186111.698003-CDS-P-wetherbeei_contig1724:4307..4508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1724 4308..4508 -
1683186111.7055452-CDS-P-wetherbeei_contig1724:4766..48141683186111.7055452-CDS-P-wetherbeei_contig1724:4766..4814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1724 4767..4814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1724.1.1prot_P-wetherbeei_contig1724.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1724 4308..4814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1724.1.1

>prot_P-wetherbeei_contig1724.1.1 ID=prot_P-wetherbeei_contig1724.1.1|Name=mRNA_P-wetherbeei_contig1724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MAENFTPEQQEALIRQMQQETQQRAVQELAQSLTVKCFKKCIKTRGERLD
TGEQECLAMCMDRYIDTMGIVNKAVVDRSQMR*
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mRNA from alignment at P-wetherbeei_contig1724:4060..4853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1724.1.1 ID=mRNA_P-wetherbeei_contig1724.1.1|Name=mRNA_P-wetherbeei_contig1724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=794bp|location=Sequence derived from alignment at P-wetherbeei_contig1724:4060..4853- (Phaeothamnion wetherbeei SAG_119_79)
AACAAAACAAAACAAGTTTCCATTCCACAAAGAACCGCCATGGCCGAGAA
CTTCACGCCCGAGCAGCAAGAGGCGCTCATCCGGCAGGTACGATAGCTCT
CCAGCCAATTTTCCCTCTCAAATCACTTCCTATCCCCTCGTCTGACATTA
TCAGCGAACTGGCTGATTCCTGGCTGGTGCATGTGTGTTGCTTTTCAAAC
ACTTAGGCTTCCCTGCCAAGCTATCTCGCACCGGCCAAAAGGGACAGGGA
AGGCGATCCGTCGCCTTCCAGCGCCATCCTCCTCTTTGTCCTTCCTCTTC
CAACGGGCCTTTTATAGTCCCCTTTTCAAAAAATCCATTCTTCAGATGCA
ACAAGAGACCCAGCAAAGGGCAGTCCAAGAATTGGCGCAATCACTTACAG
TAAAGTGCTTTAAGAAGTGCATAAAGACGAGGGGAGAAAGATTGGACACC
GGAGAACAAGAATGCTTGGCGATGTGCATGGACCGATATATCGACACCAT
GGGCATCGTCAACAAAGCTGTCGTGGATCGGTCGCAGATGCGATGAATTG
ATGGAGCAATGGCACGAAAGAAAGGCAAGCGAGCTGGAATCGTTTTGCCC
AAGATGTGAAAATATTCTGGTGAAACGGAACCTTTGCGGACTAATCGTTG
CCTTACAACTGCGCATTTCGCGGATTGAGGCCCGTAACTGAGGCCATTCC
TTATCTGCCGGCAAGCAACAGATCCAAAATCGATGCCTACGGCACGAAAC
ATCTGAGCCTTTATGAAGCGCTCTACACGTTTGATTCTTCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1724:4060..4853-

>mRNA_P-wetherbeei_contig1724.1.1 ID=mRNA_P-wetherbeei_contig1724.1.1|Name=mRNA_P-wetherbeei_contig1724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig1724:4060..4853- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAGAACTTCACGCCCGAGCAGCAAGAGGCGCTCATCCGGCAGAT
GCAACAAGAGACCCAGCAAAGGGCAGTCCAAGAATTGGCGCAATCACTTA
CAGTAAAGTGCTTTAAGAAGTGCATAAAGACGAGGGGAGAAAGATTGGAC
ACCGGAGAACAAGAATGCTTGGCGATGTGCATGGACCGATATATCGACAC
CATGGGCATCGTCAACAAAGCTGTCGTGGATCGGTCGCAGATGCGATGA
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