mRNA_P-wetherbeei_contig1722.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1722.2.1
Unique NamemRNA_P-wetherbeei_contig1722.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Match: A0A835Z9G1_9STRA (Chalcone isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.020e-26
Identity = 77/183 (42.08%), Postives = 99/183 (54.10%), Query Frame = 1
Query:    1 LAGVGVRVKKIGPAAVKVYGLGVYVDERGAKSALAKYNKTLYACISW-DEITKHSPGRQIFSPHTRRRLRQMNVKGDGAGQNCFAFALLGRSPLRLCAMSHSACCLFFFALWAG---EYGSTPPIQFGFACKPGSLCVSINGKAAGTVSSKALSSALQDVYLGAKAVSQGAKDSTADGIAKML 537
            LAG GVRVKKIGPAA KVY +G+YVD   A+S L+K++ T    +S  D   K +           +  R++       G      AL      RL     +A   F   L      E  +   +QFGF CKPGSLCVSI+GK AGT++S+ L SA+ DVYLG  AVS GAK S A+G++ M 
Sbjct:   43 LAGTGVRVKKIGPAAFKVYAVGMYVDSAKARSELSKHSSTESRALSKSDAFFKDARSASFEKTLVLKMARKV-------GAEKMVNALAESVKPRLAPGGDAALEEFQTVLLDAVTKEGAANKGMQFGFVCKPGSLCVSIDGKTAGTINSEQLRSAMLDVYLGKDAVSPGAKTSFAEGMSSMF 218          
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Match: D7FP06_ECTSI (Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP06_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.690e-22
Identity = 75/189 (39.68%), Postives = 94/189 (49.74%), Query Frame = 1
Query:    1 LAGVGVRVKKIGPAAVKVYGLGVYVDERGAKSALAKYNKTLYACISWDEITKHSPGRQI------FSPHTRRRLRQMNV--KGDGAGQNCFAFALLGRSPLRLCAMSHSACCLFFFALWA-GEYGSTPP-IQFGFACKPGSLCVSINGKAAGTVSSKALSSALQDVYLGAKAVSQGAKDSTADGIAKML 537
            L G GVRVKKIGPA VKVY +G+YVDE+ A   L              E+ K   G  +      F+   +    +  V       G      AL      R+              L A G+ G+    +QFGF CKPG+LCVS+NGK AGT+ S  LSSA+ DVYLG KAVS GAK + A G+A +L
Sbjct:   56 LMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKEL--------------EVHKGEDGESLGKNDGFFTRVAKSNFEKTMVLKMAREVGTEKMVSALAESVKPRISGSKKPLDSFQDILLKAVGKEGAAKKGMQFGFVCKPGALCVSVNGKDAGTIKSGPLSSAMVDVYLGKKAVSPGAKKAFATGVAALL 230          
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Match: A0A7R9YAW0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAW0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.580e-20
Identity = 71/185 (38.38%), Postives = 95/185 (51.35%), Query Frame = 1
Query:    1 LAGVGVRVKKIGPAAVKVYGLGVYVDERGAKSALAKYN----KTLYACISWDEITKHSPGRQIFSPHTRRRLRQMNVKGDGAGQNCFAFALLGRSPLRLCAMSHSACCLFFFALWAGEYGST--PPIQFGFACKPGSLCVSINGKAAGTVSSKALSSALQDVYLGAKAVSQGAKDSTADGIAKML 537
            LAG GVRVKKIGP AVKVY +G+YVD+R  +S+L  +     +TL    ++ +  + +P  + F      +L+     G     N  + ++  R    L A+S      F   L +G  G +      FGFA   G L VSINGK  G V+S+ L  AL D YLG  AVS  AK S A G+  ML
Sbjct:   47 LAGTGVRVKKIGPVAVKVYAVGLYVDQRAVQSSLNSFEAFPEETLLGSKAFFKAIRKAPFDKCF------QLKMARTVGGEKMVNALSESVRPRMKSELEALSE-----FQSVLQSGLKGGSCVKNTSFGFAANKGKLIVSINGKQEGVVASRELCDALTDTYLGEGAVSPDAKASFAKGLCNML 220          
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Match: A0A7S1XYD8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYD8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.380e-18
Identity = 65/185 (35.14%), Postives = 93/185 (50.27%), Query Frame = 1
Query:    1 LAGVGVRVKKIGPAAVKVYGLGVYVDERGAKSALAKYN----KTLYACISWDEITKHSPGRQIFSPHTRRRLRQMNVKGDGAGQNCFAFALLGRSPLRLCAMSHSACCLFFFALWAGEYGS--TPPIQFGFACKPGSLCVSINGKAAGTVSSKALSSALQDVYLGAKAVSQGAKDSTADGIAKML 537
            LAG+G R+K+IGP  VKVY +G+YVD+R  +S+L  +     +TL    ++ +  + +P  + F       L+     G     N  A ++  R    + A++      F   L AG  G   T    FGFA   G L VSINGK  GTV+S+ L  A  D Y+G  AVS  AK + A G+  M+
Sbjct:   49 LAGMGCRIKQIGPVKVKVYAVGLYVDQRAVQSSLNSFEAFPEETLLGSKAFFKAIRKAPFEKCFM------LKMARTVGSDKMVNALADSIKPRMKNEMEALTE-----FQGLLSAGLKGGSCTKNTAFGFAASKGKLVVSINGKEEGTVNSRELCDAFTDTYIGDNAVSPDAKSNFAKGLCAMI 222          
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Match: W7TIJ2_9STRA (Chalcone isomerase, subgroup n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIJ2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.870e-11
Identity = 68/188 (36.17%), Postives = 91/188 (48.40%), Query Frame = 1
Query:    1 LAGVGVRVKK-IGPAAVKVYGLGVYVDERGAKSALAKY------NKTLYACI---SWDEITKHSPGRQIFSPHTRRRLRQMNVKGDGAGQNCFAFALLGRSPLRLCAMSHSACCLFFFALWAGEYGSTPPI--QFGFACKPGS-LCVSINGKAAGTVSSKALSSALQDVYLGAKAVSQGAKDSTADGI 525
            LAGVGVRVKK +GP AVKVYG+G+YVD+  A   L+K+      +K L+  +   ++D+I      R++                   G      AL      RL   S +A   F   L AG  G       QFGF  + GS L V+INGK  G ++S  L+ AL   YL   AVS+  K+S A G+
Sbjct:   45 LAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGNFDKIVLLKMARKV-------------------GAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213          
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Match: A0A6S9FSE1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FSE1_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 4.450e-11
Identity = 63/183 (34.43%), Postives = 86/183 (46.99%), Query Frame = 1
Query:    1 LAGVGVRVKKIGPAAVKVYGLGVYVDERGAKSALAKYNKTLYACISW-DEITKHSPGRQIFSPHTRRRLRQMNVKGDGAGQNCFAFALLGRSPLRLCAMSHSACCLFFFALWAG--EYGSTPP-IQFGFACKPGSLCVSINGKAAGTVSSKALSSALQDVYLGAKAVSQGAKDSTADGIAKML 537
            LAGVGVRVK+IGP +VKVYG+G+Y+DE  A   +++Y     A   +   + K S  ++I        L+     G        A ++  R    L A+S      F   L  G  E GS     +  F    G L V INGK+AG V S +L  A  D Y+  K VS   +DS A+ +   L
Sbjct:   40 LAGVGVRVKQIGPLSVKVYGVGMYMDESSALEEISEYAGGKKADSGFFSRLRKPSIDKKIV-------LKMARSVGSETMSEALAESIKPRMSGDLPALSS-----FQTVLLKGLSEDGSAKKGTELAFDASGGKLNVKINGKSAGDVESSSLCDAFVDTYMDDKGVSPTLRDSIAETLCAKL 210          
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Match: A0A7S4F2D8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F2D8_CHRCT)

HSP 1 Score: 63.2 bits (152), Expect = 6.440e-9
Identity = 63/185 (34.05%), Postives = 85/185 (45.95%), Query Frame = 1
Query:   10 VGVRVKKIGPAAVKVYGLGVYVDERGAKSALAKYNKTLYACISWDEITKHSPGRQIFSPHTRRRLRQMNV--KGDGAGQNCFAFALLGRSPLRLCAMSHSACCLFFFAL-------WAGEYGSTPPIQFGFACKPGSLCVSINGKAAGTVSSKALSSALQDVYLGAKAVSQGAKDSTADGIAKML 537
            VGV V+K GP  +KVYG+G+YVD  G+K +L+KY K       + E     P +  F         +  V     G  +   A AL      RL A S     + F  L       +A +  +     F F  +  +L V +NGK  G V SK L  AL + Y  AK VSQG +D+ A GI +ML
Sbjct:   43 VGVGVRKKGP--IKVYGVGLYVDSMGSKMSLSKYKK-------YKEDQSALP-KSFFEDLVCGGFGKTLVLKMAYGVTKEKIAGALGDSIKPRLPAGSSRQSVVEFEQLLLDGCEKYAKDGRAGAGTCFTFGVRGSNLGVEVNGKKVGVVHSKPLCQALLNCYFDAKTVSQGLRDTCAQGILEML 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1722.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z9G1_9STRA8.020e-2642.08Chalcone isomerase n=1 Tax=Tribonema minus TaxID=3... [more]
D7FP06_ECTSI2.690e-2239.68Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7R9YAW0_9STRA2.580e-2038.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XYD8_9STRA4.380e-1835.14Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7TIJ2_9STRA1.870e-1136.17Chalcone isomerase, subgroup n=3 Tax=Monodopsidace... [more]
A0A6S9FSE1_HETAK4.450e-1134.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4F2D8_CHRCT6.440e-934.05Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1722contigP-wetherbeei_contig1722:243..1369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FP06
PFAMsChalcone,Chalcone_3
Model size543
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue4.42e-23
EggNOG OGs2E0MF@1|root,2S81H@2759|Eukaryota
Ec32 ortholog descriptionChalcone Isomerase-like
Ec32 orthologEc-05_001880.1
DescriptionChalcone isomerase-like
Cds size543
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.2547636-CDS-P-wetherbeei_contig1722:242..3551683186111.2547636-CDS-P-wetherbeei_contig1722:242..355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1722 243..355 +
1683186111.2735333-CDS-P-wetherbeei_contig1722:939..13691683186111.2735333-CDS-P-wetherbeei_contig1722:939..1369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1722 940..1369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1722.2.1prot_P-wetherbeei_contig1722.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1722 243..1369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1722.2.1

>prot_P-wetherbeei_contig1722.2.1 ID=prot_P-wetherbeei_contig1722.2.1|Name=mRNA_P-wetherbeei_contig1722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
LAGVGVRVKKIGPAAVKVYGLGVYVDERGAKSALAKYNKTLYACISWDEI
TKHSPGRQIFSPHTRRRLRQMNVKGDGAGQNCFAFALLGRSPLRLCAMSH
SACCLFFFALWAGEYGSTPPIQFGFACKPGSLCVSINGKAAGTVSSKALS
SALQDVYLGAKAVSQGAKDSTADGIAKMLG*
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mRNA from alignment at P-wetherbeei_contig1722:243..1369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1722.2.1 ID=mRNA_P-wetherbeei_contig1722.2.1|Name=mRNA_P-wetherbeei_contig1722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1127bp|location=Sequence derived from alignment at P-wetherbeei_contig1722:243..1369+ (Phaeothamnion wetherbeei SAG_119_79)
TTAGCCGGCGTGGGCGTGCGCGTCAAAAAGATCGGGCCCGCGGCAGTCAA AGTTTACGGCCTCGGCGTCTATGTCGACGAGCGTGGCGCAAAGTCGGCAC TGGCCAAGTACAAGTAAGGAAACACACACCAAAGCCTGCCTTCCTGACCA TTTTAAGCTCGGAAGCACGCCGCTGCCATTGCCCAGTCGTTTCACCGTTG CGGCGATCTGCCTGCAGGGGATGGGAGCCGTGCAAGCTGCGCAAGAGCGA AGGCTTCTTCAAGGACGTCTTGGCCGCAAGCTTTGAAAAGACTTTTGTGA GTTTTCTCGTCATTGGAGATGCTGGCGGCGCGCGTCGGCTGAGAAGGACT GCTGCCCGCGCCGTGCCGCGGCACCTATATCTCAGATGTTGTGGCTGCAA CGCTAAGAATCTGTTGCACAGCCAACGAGCTTCCTTCCTTGCATCTCTTG GCAAGTTGCAGTTCCAAGGAATGAAAAATTGCGGCGTCTTTTCCATCCTT ATGCTCCAAACGCTCTGCCTGGTCTTCCAGGTGCTGAGAATGGCGCGGAA TGTGGGCACGGAGAAGATGGTTTCTGCCCTGGCGGAGAGCGTTAAGCCGC GTCTCTCGGGGCCTCTCGCGCCACTGACCCAATTCGAGAGCATTCTGCTC GACGCGGTTGGAAAGGCGGGCGGGGCCAACAAGGGATTGCAGGTCAGCAA AACCCTGTATGCGTGCATATCTTGGGATGAAATAACGAAGCATTCACCGG GGCGGCAAATATTCAGCCCACATACGCGAAGGAGGCTTCGACAAATGAAC GTTAAGGGCGACGGAGCTGGCCAAAACTGTTTTGCTTTTGCTTTGTTGGG ACGTTCTCCTCTGCGGCTTTGTGCCATGTCTCACTCAGCCTGCTGCCTCT TCTTCTTCGCCCTCTGGGCGGGTGAATACGGCTCAACCCCGCCCATCCAG TTTGGCTTTGCCTGCAAGCCCGGGTCGCTGTGTGTGAGCATCAACGGCAA GGCCGCGGGGACGGTGTCGAGCAAGGCCCTCTCCTCGGCTTTGCAGGACG TCTACCTCGGCGCCAAGGCCGTGTCGCAGGGCGCCAAGGATAGCACTGCC GACGGCATCGCGAAAATGCTCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1722:243..1369+

>mRNA_P-wetherbeei_contig1722.2.1 ID=mRNA_P-wetherbeei_contig1722.2.1|Name=mRNA_P-wetherbeei_contig1722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig1722:243..1369+ (Phaeothamnion wetherbeei SAG_119_79)
TTAGCCGGCGTGGGCGTGCGCGTCAAAAAGATCGGGCCCGCGGCAGTCAA
AGTTTACGGCCTCGGCGTCTATGTCGACGAGCGTGGCGCAAAGTCGGCAC
TGGCCAAGTACAACAAAACCCTGTATGCGTGCATATCTTGGGATGAAATA
ACGAAGCATTCACCGGGGCGGCAAATATTCAGCCCACATACGCGAAGGAG
GCTTCGACAAATGAACGTTAAGGGCGACGGAGCTGGCCAAAACTGTTTTG
CTTTTGCTTTGTTGGGACGTTCTCCTCTGCGGCTTTGTGCCATGTCTCAC
TCAGCCTGCTGCCTCTTCTTCTTCGCCCTCTGGGCGGGTGAATACGGCTC
AACCCCGCCCATCCAGTTTGGCTTTGCCTGCAAGCCCGGGTCGCTGTGTG
TGAGCATCAACGGCAAGGCCGCGGGGACGGTGTCGAGCAAGGCCCTCTCC
TCGGCTTTGCAGGACGTCTACCTCGGCGCCAAGGCCGTGTCGCAGGGCGC
CAAGGATAGCACTGCCGACGGCATCGCGAAAATGCTCGGCTGA
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