mRNA_P-wetherbeei_contig1721.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: D8LQJ6_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ6_ECTSI) HSP 1 Score: 228 bits (581), Expect = 6.400e-70 Identity = 118/231 (51.08%), Postives = 155/231 (67.10%), Query Frame = 1
Query: 4 SRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRPLLPSPAFLKQAEG-WPPLRGIVARRNFVPVP 693
+ L EV PL TL +C++++ VF+F ++ Y L ++Y GEYYR++T A++H GL HI+FNMMS +IGS LE GTL L FTILWS++L GV++ EW MT VT D Y+ Q +VGFSGVIFTLAL+ES+ S RSVFG +VPTR+YP+VLL++L M +S GHL GI+VG++HVYG T+PL+PSPAF + E W I R NFVP P
Sbjct: 4 NNLGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSSLEVAFGTLSLLFTILWSMILAGVVHCGAEWVMTVWVTHDPTYVNQPSVGFSGVIFTLALMESYRSTQPTRSVFGMMRVPTRMYPWVLLVLLSVFMRDISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVRDSIGLRHNFVPYP 234
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: A0A835Z1X9_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X9_9STRA) HSP 1 Score: 210 bits (534), Expect = 5.870e-63 Identity = 111/225 (49.33%), Postives = 151/225 (67.11%), Query Frame = 1
Query: 4 SRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDE--QYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPG-VSMAGHLGGIIVGLLHVYGATRPLLPSPAFLKQAEGWPPLRGIVA 669
SRL E + G PL TL V+ +C V + +FL + + Y++ AR+VLY GE+YRI+TAA +HA + HI FNMMS+ AIG GLE+ +GT+ + T+ WS++L G +Y EW V G+ ++LLQ AVGFSGVIFTLA++E+ S+ +R + G +VPT+LYP+ L++VLQ MM G VS GHL G IVG+LH YG T PLLPS L E WP + + A
Sbjct: 3 SRLGEALGGVPLCTLCVVAMCCAVHLAIFLLDTPITMYSIMARNVLYLGEWYRIITAAFVHASMMHIGFNMMSLLAIGGGLESDLGTVAMTMTVWWSVILVGGLYCAGEWLFADVRGGEHAREHLLQQAVGFSGVIFTLAVMEAQRSSEPYRMLMGMVKVPTKLYPWALMIVLQVMMKGEVSFMGHLAGAIVGILHTYGLTAPLLPSKQMLHDMEDWPGISAMAA 227
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: B8C3M6_THAPS (Rhomboid domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M6_THAPS) HSP 1 Score: 189 bits (481), Expect = 9.450e-55 Identity = 100/231 (43.29%), Postives = 148/231 (64.07%), Query Frame = 1
Query: 1 MSRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRPLLPSPAFLKQAEGWPPLRGIVARRNFVPVP 693
MSR E + PLATL+++ +C V + F+P + + + R VLY EYYRI+T+++ H L HI NMMS AIG+ LE GT +A T+LW ++L VIY+T W + +V G E+ + Q+++GFSGVIF L++LE+ + RSVFG QV +++YP+ LL+VLQF+MP +S GHL GI++G L ++GA + + PS A+L+ E W L I + FV +P
Sbjct: 1 MSRASETLASIPLATLSIMALCCFVYLYQLAFDPTLHNFTMCPRLVLYMNEYYRIITSSLFHGSLMHIGMNMMSTMAIGTSLEKRFGTFTMALTVLWGVLLTSVIYMTTSW-LLYVGFGYEKMMYQHSLGFSGVIFQLSVLEANLTPNRSRSVFGMIQVSSKMYPWCLLVVLQFIMPQISFLGHLSGILLGTLQLHGADK-IFPSDAYLQDLETWSALEAITTKPGFVKMP 229
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: A0A7S2GX31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GX31_9STRA) HSP 1 Score: 184 bits (466), Expect = 2.690e-52 Identity = 96/214 (44.86%), Postives = 140/214 (65.42%), Query Frame = 1
Query: 1 MSRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRP-LLPSPAFLKQAE 639
MSRL E + PLATL+++ +C ++ LF+P + Y + R+VLY EYYRI+T+ + H+G H NM S AI S LE GTL TILW ++L ++Y+ + W M +++ G E+ + Q++VGFSGVIF L++LES + RSVFGF +VP+ LYP+ LL+VLQ ++P +S GHL GI+VG L +YG P +LPS +L++ E
Sbjct: 1 MSRLSETLASIPLATLSIIALCTIIFTYQLLFDPPLHQYTMCPRNVLYLSEYYRIITSNLFHSGFLHFFMNMSSTAAISSSLEHRYGTLKQMVTILWGMILTSIVYMIISWAM-YMIFGYEKSMFQHSVGFSGVIFQLSVLESNINLDRTRSVFGFIKVPSYLYPWALLVVLQVLIPAISFLGHLSGILVGTLQLYGILDPFVLPSDDYLRKME 213
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: A0A6U6ILB2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6ILB2_9STRA) HSP 1 Score: 179 bits (453), Expect = 7.850e-51 Identity = 99/230 (43.04%), Postives = 140/230 (60.87%), Query Frame = 1
Query: 4 SRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRPLLPSPAFLKQAEGWPPLRGIVARRNFVPVP 693
SR+ V P ATL+V+ C +V + L +P + Y L R ++ EYYR +T+A+ H G HI FNMMS+ IGS LE GTL FT+LW ++L +Y T+ + + G E + Q++VGFSGVIF L++LE+ + S RSVFGFF+VP LYP+ LL+ +QF++P VS GHL GI VG L +YG ++P+ +LK E W LR + + +FV P
Sbjct: 3 SRVINAVSSIPPATLSVIASCSLVFLFQLLADPPLHHYTLCPRLAIHLNEYYRFVTSAIFHGGFMHIFFNMMSLAGIGSLLEKQFGTLMFTFTVLWGVLLTSAVY-TLCAILLHITFGIETLMYQHSVGFSGVIFQLSVLEANLNPNSARSVFGFFRVPAYLYPWALLIAIQFILPQVSFVGHLSGIFVGTLQLYGVLEIIIPTDPYLKVMEEWRCLRLLTSSVSFVRTP 231
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: A0A7S1UGS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGS1_9STRA) HSP 1 Score: 171 bits (433), Expect = 6.060e-48 Identity = 88/191 (46.07%), Postives = 129/191 (67.54%), Query Frame = 1
Query: 58 VVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRPLLPSPAFLK 630
+VCV +++ VF EP + Y ++AR+V Y GE YRI+T+A HAG H+ FNMMS AI LE IGT +A ++W+++L G++ + W M++V TG ++ QN++G+SGV+FTLA+LES A RSVFG F V +++YP+VLL+ +QF++ S GHL G IVGLL +G R L+PS F++
Sbjct: 36 IVCVALQLYVFFMEPVLAHYTISARTVFYGGELYRIITSAFFHAGWLHLAFNMMSTLAIQGMLERKIGTGLMALVVVWAVLLGGLLLCAINWTMSYV-TGGLDWVTQNSIGYSGVLFTLAVLESHRKDAPQRSVFGLFFVSSKVYPWVLLVAIQFLIRNASFVGHLSGAIVGLLLNFGLARVLMPSSGFMQ 225
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: A0A7S0FT53_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FT53_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.260e-46 Identity = 102/232 (43.97%), Postives = 135/232 (58.19%), Query Frame = 1
Query: 1 MSRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRPL-LPSPAFLKQAEGWPPLRGIVARRNFVPVP 693
MSR EV PL ++ +CV V ++ + D+ + L R+VLY EYYRI T+ V H GL HI FNMMS AIGS LE GTL FT+ + L Y+ V +++ D+ + Q++VGFSGV+F L++LE+ S S RSVFG QVP LYP+ LL+ LQ MP +S GHL GI VG L +YG L LPS +L+ + WP L+ I AR +V P
Sbjct: 1 MSRAAEVAASIPLGNRFIIGLCVCVFLLQTILNLDLHDFTLCPRNVLYQHEYYRIFTSCVFHGGLLHIGFNMMSTAAIGSLLEKRFGTLRHLFTVFLGMFLTSWTYILVACLLSWACRYDKL-VYQHSVGFSGVLFQLSVLEANLSPNSTRSVFGMVQVPAYLYPWALLVALQIFMPNISFVGHLSGIFVGTLQLYGVLDALVLPSDEYLRAMDDWPSLQQIAAREGYVRTP 231
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: B7FT28_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FT28_PHATC) HSP 1 Score: 165 bits (418), Expect = 1.120e-45 Identity = 96/233 (41.20%), Postives = 138/233 (59.23%), Query Frame = 1
Query: 1 MSRLREVVDGFPLATLTVLVVCVVVEVVV-FLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRPLLPSPAFLKQAEGWPPLRGIVARRNFVPVPA 696
MSR E++ P T ++ +CV++ VV L + ++ + L + V+Y E YRI T+A+ H + H+ NMM+ AIGS LE GT L ILWSI+L G++Y+ + + ++ Q + Q++VGFSGVIF L++LES RSVFGFF VP+ LYP+VLL+ LQ MPG+S GHL GI+VG L +YG +L LK+ + W L + + NF P A
Sbjct: 1 MSRFNELLQRTPQTTTGIIALCVILHVVTKVLLDLNLRIFTLCPQLVIYRLEIYRIATSALFHGNIMHLAMNMMTTLAIGSLLEKRFGTFRLLLIILWSILLTGILYIGIALFLAIIIQ-KNQLMRQHSVGFSGVIFHLSVLESNLGTHQSRSVFGFFDVPSYLYPWVLLVGLQIFMPGLSFTGHLVGILVGTLQLYGGLNWILWGEERLKRVDNWSRLDFLTRQHNFCPTTA 232
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: A0A7S0STK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STK5_9STRA) HSP 1 Score: 159 bits (401), Expect = 1.210e-44 Identity = 79/176 (44.89%), Postives = 120/176 (68.18%), Query Frame = 1
Query: 88 FLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGATRPLLPS 615
F+ ++ Y++N+ +++Y E YRI+T+A MH GL HI NMMS+ +GS LE G+L + F +W+I L G Y+ ++W + V TG Y+ +AVG+S V+FT A++E+F + S+RSVFG F VP+++YPF+LL++LQ M+P +S GHL G+IVGLL + G L+PS
Sbjct: 1 FITSSNINNYSINSYNIIYNYELYRIITSAFMHGGLMHIAMNMMSLYQLGSELEIQFGSLSMIFITIWTIFLSGFCYIFLQW-LIAVTTGLRGYMGISAVGYSCVLFTYAVIEAFHTNQSYRSVFGIFNVPSKVYPFILLIILQVMLPNISFIGHLSGVIVGLLTITGVVDYLIPS 175
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Match: A0A1E7FBT4_9STRA (Rhomboid domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBT4_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.160e-44 Identity = 92/228 (40.35%), Postives = 138/228 (60.53%), Query Frame = 1
Query: 4 SRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGEYYRILTAAVMHAGLRHILFNMMSMCAIGSGLEATIGTLGLAFTILWSIVLCGVIYVTVEWGMTFVVTGDEQYLLQNAVGFSGVIFTLALLESFTSAASHRSVFGFFQVPTRLYPFVLLLVLQFMMPGVSMAGHLGGIIVGLLHVYGA-TRPLLPSPAFLKQAEGWPPLRGIVARRNFV 684
+R + + P ATL V+ +CV + ++ D+ + + R +L+ EYYRI T+ HA L HI NM+S I + LE IGTL L +I WSI+L IY+ + + +++ G + ++ Q+++GFSG+IF L++LES+ RSVFGFF VP+ +YP+ LLL+LQ +MP +S GHL GI+ G L YG R L S +FL + E P +R +V+ NFV
Sbjct: 1 NRSTDALRQLPPATLGVITICVFLFIIQMTMTWDIQLFTMCPRLILFMNEYYRIFTSVFFHANLMHIGMNMLSTSTISTVLEKRIGTLRLIVSIWWSILLTSTIYIIIAY-TAYIIFGYDTWMYQHSIGFSGIIFHLSVLESYLHPGQ-RSVFGFFSVPSFVYPWALLLILQLIMPNLSFLGHLSGILTGSLEYYGVWDRFLFLSDSFLIEIESLPMMRRLVSLDNFV 226 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1721.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1721.5.1 >prot_P-wetherbeei_contig1721.5.1 ID=prot_P-wetherbeei_contig1721.5.1|Name=mRNA_P-wetherbeei_contig1721.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=296bp MSRLREVVDGFPLATLTVLVVCVVVEVVVFLFEPDMLGYALNARSVLYAGback to top mRNA from alignment at P-wetherbeei_contig1721:4132..5478- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1721.5.1 ID=mRNA_P-wetherbeei_contig1721.5.1|Name=mRNA_P-wetherbeei_contig1721.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1347bp|location=Sequence derived from alignment at P-wetherbeei_contig1721:4132..5478- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1721:4132..5478- >mRNA_P-wetherbeei_contig1721.5.1 ID=mRNA_P-wetherbeei_contig1721.5.1|Name=mRNA_P-wetherbeei_contig1721.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig1721:4132..5478- (Phaeothamnion wetherbeei SAG_119_79)back to top |