mRNA_P-wetherbeei_contig17203.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17203.1.1
Unique NamemRNA_P-wetherbeei_contig17203.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17203.1.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.020e-6
Identity = 40/135 (29.63%), Postives = 56/135 (41.48%), Query Frame = 3 
Query:  120 GTIELDGLAPRPADQPPALHIYGKRLRSAEA-------------------------------------------------------------SQG----------VVYFEAATVWVRPVDIKVEESVFLQVLRMR 311
            G I+LDGLAPRPAD+PPALH + KR R+A++                                                              QG          V Y++ AT+W+RPVD+KVE+S+FL ++R+R
Sbjct: 1912 GIIQLDGLAPRPADRPPALHFFAKR-RAADSPNTAGSXXXXXXXXSAKRVSLTMTNQRAGGGESSXXXXXXXXXXXXXXXXXXXXXVGNWWRGQGQQQQRELDMVVYYYDVATIWIRPVDLKVEQSIFLALMRLR 2045
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0E6_9PHAE5.020e-629.63PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17203contigP-wetherbeei_contig17203:289..1084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size562
Hectar predicted targeting categoryother localisation
Exons2
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.9752305-CDS-P-wetherbeei_contig17203:288..5841683186110.9752305-CDS-P-wetherbeei_contig17203:288..584Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17203 289..584 +
1683186110.985606-CDS-P-wetherbeei_contig17203:818..10831683186110.985606-CDS-P-wetherbeei_contig17203:818..1083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17203 819..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17203.1.1prot_P-wetherbeei_contig17203.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17203 289..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17203.1.1

>prot_P-wetherbeei_contig17203.1.1 ID=prot_P-wetherbeei_contig17203.1.1|Name=mRNA_P-wetherbeei_contig17203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
KPSVPWAVLPAPPPPVGAAPQPPALARQCRRRRRRRRWRRARSSWTGWRR
GRRTSRRRCTSTGSGCAAPRRARESYTSRQRRCGCGLSTSRSKRASFSRC
CVCGTPSVAASVAVATSRATSAPGRAATPSRMQPQRSPPPRPRAATGHQQ
RWWRCQPRRRRRRSDGARRSSRGRWPGGRAGWPSGCG
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mRNA from alignment at P-wetherbeei_contig17203:289..1084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17203.1.1 ID=mRNA_P-wetherbeei_contig17203.1.1|Name=mRNA_P-wetherbeei_contig17203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=796bp|location=Sequence derived from alignment at P-wetherbeei_contig17203:289..1084+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCCGTCGGTGCCATGGGCGGTCCTCCCTGCGCCGCCACCGCCGGTGGG
CGCAGCGCCTCAACCTCCGGCACTGGCGCGACAGTGTCGTCGTCGGCGGC
GGCGGCGGCGCTGGCGGCGGGCACGATCGAGCTGGACGGGTTGGCGCCGC
GGCCGGCGGACCAGCCGCCGGCGTTGCACATCTACGGGAAGCGGCTGCGC
AGCGCCGAGGCGAGCCAGGGAGTCGTATACTTCGAGGCAGCGACGGTGTG
GGTGCGGCCTGTCGACATCAAGGTCGAAGAGAGCGTCTTTCTCCAGGTGC
AATGCGGCGAGGGAGCGAGCCAGAGAGACAAGACTATCGAAATTGAGATT
AAACCGTCGTTGCTTGCCTCACATTGCATTCTGTTGTGGTTTGACTGTAA
GAGCGGATTAATGCGCGCTCCGGAGAGAAAGAAGGATACCTTTTTGGAAC
TTCTTTTGTGTTTTCTTCTGCAATCAAAAGTATCTGGCTTTGCCTTCCAT
ATTTTCATCTCCAACGCATTTTAACCGCAGGTGCTGCGTATGCGGAACGC
CATCAGTGGCGGCGTCGGTGGCGGTGGCGACGTCTCGCGCGACCTCAGCG
CCTGGAAGGGCCGCGACTCCGTCTCGGATGCAGCCCCAGCGCTCGCCACC
GCCGCGGCCACGGGCGGCAACGGGCCATCAACAGCGATGGTGGCGCTGCC
AACCCCGGCGGAGGCGTCGGCGCAGCGACGGCGCCAGGCGGAGTTCCAGG
GGACGGTGGCCGGGGGGGCGGGCGGGCTGGCCGAGCGGCTGCGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17203:289..1084+

>mRNA_P-wetherbeei_contig17203.1.1 ID=mRNA_P-wetherbeei_contig17203.1.1|Name=mRNA_P-wetherbeei_contig17203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig17203:289..1084+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCCGTCGGTGCCATGGGCGGTCCTCCCTGCGCCGCCACCGCCGGTGGG
CGCAGCGCCTCAACCTCCGGCACTGGCGCGACAGTGTCGTCGTCGGCGGC
GGCGGCGGCGCTGGCGGCGGGCACGATCGAGCTGGACGGGTTGGCGCCGC
GGCCGGCGGACCAGCCGCCGGCGTTGCACATCTACGGGAAGCGGCTGCGC
AGCGCCGAGGCGAGCCAGGGAGTCGTATACTTCGAGGCAGCGACGGTGTG
GGTGCGGCCTGTCGACATCAAGGTCGAAGAGAGCGTCTTTCTCCAGGTGC
TGCGTATGCGGAACGCCATCAGTGGCGGCGTCGGTGGCGGTGGCGACGTC
TCGCGCGACCTCAGCGCCTGGAAGGGCCGCGACTCCGTCTCGGATGCAGC
CCCAGCGCTCGCCACCGCCGCGGCCACGGGCGGCAACGGGCCATCAACAG
CGATGGTGGCGCTGCCAACCCCGGCGGAGGCGTCGGCGCAGCGACGGCGC
CAGGCGGAGTTCCAGGGGACGGTGGCCGGGGGGGCGGGCGGGCTGGCCGA
GCGGCTGCGGG
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