mRNA_P-wetherbeei_contig17188.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17188.1.1
Unique NamemRNA_P-wetherbeei_contig17188.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17188.1.1 vs. uniprot
Match: A0A6A2FM65_9BACT (Oligosaccharide flippase family protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6A2FM65_9BACT)

HSP 1 Score: 135 bits (339), Expect = 4.240e-32
Identity = 77/164 (46.95%), Postives = 108/164 (65.85%), Query Frame = 1 
Query:   10 LLPGLPLLPFVWMAIVWALLNSNTDLQRKLLQVREQSSYSAKLSIVTSAITIALTLYFVVVLKMGAYGVVLAMLISAFIFFLQGQYYLRDDLRGKFRTEHLKPSFHFAAGIFPHQLLSNLSPLISRSILSGYGSLAAVGLLGLGFRFIVPLRPYA---NLLFDP 492
            L+PGLPL PFV + ++  + ++N+++Q++LLQ R+QS+YSAKLSIVTS + I   +  VV   +GA G+V A L+ + IFF+Q Q+YLR D+ G F  + L PSF +A  I P   ++    L+SRS+LSG+ SLAAVGL  L  RFI PL   +   N  F P
Sbjct:  113 LVPGLPLWPFVGVVLLADIFSANSEIQKRLLQARKQSAYSAKLSIVTSLVGIITAIVLVVGFDLGALGIVGASLMGSTIFFIQAQFYLRKDMGGNFSFKLLTPSFKYALNILPSHFVTPFGNLLSRSLLSGFSSLAAVGLYSLAMRFITPLYLISEAFNTAFSP 276
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BLAST of mRNA_P-wetherbeei_contig17188.1.1 vs. uniprot
Match: UPI001C085721 (oligosaccharide flippase family protein n=1 Tax=Polaribacter vadi TaxID=1774273 RepID=UPI001C085721)

HSP 1 Score: 60.1 bits (144), Expect = 2.500e-6
Identity = 47/166 (28.31%), Postives = 81/166 (48.80%), Query Frame = 1 
Query:    4 DFLLPGLPLLPFVWMAIVWALLNSNTDLQRKLLQVREQSSYSAKLSIVTSAITIALTLYFVVVLKMGAYGVVLAMLISAFIFFLQGQYYLRDDLRGKFRTEHLKPSFHFAAGIFPHQLLSNLSPLISRSILSGYGSLAAVGLLGLGFRF---IVPLRPYANLLFDP 492
            D +L G+   PF+ + +V  L N    + +  LQ R+ ++   K +I    + I L L+ V+ L++G  GV+ A+ I+ F FF+      + DL+   +   LK   +++  + PH L    + LI R I++ + S A VG+  +G  F   +  L    N  F P
Sbjct:  110 DLILNGIDFYPFMILGLVSILFNPVFIIYQSSLQARQLANRFGKNNIAFFIVNITLLLFSVIFLQIGVLGVLGALAITNFSFFIITIINFKKDLQFGIKKTILKQVLNYSLPLLPHTLSGVATNLIDRLIINNFLSTALVGIYSIGSNFGSIVFMLAQGINQAFVP 275
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BLAST of mRNA_P-wetherbeei_contig17188.1.1 vs. uniprot
Match: UPI000C071A88 (oligosaccharide flippase family protein n=1 Tax=Clostridium tertium TaxID=1559 RepID=UPI000C071A88)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-5
Identity = 38/147 (25.85%), Postives = 71/147 (48.30%), Query Frame = 1 
Query:   10 LLPGLPLLPFVWMAIVWALLNSNTDLQRKLLQVREQSSYSAKLSIVTSAITIALTLYFVVVLKMGAYGVVLAMLISAFIFFLQGQYYLRDDLRGKFRTEHLKPSFHFAAGIFPHQLLSNLSPLISRSILSGYGSLAAVGLLGLGFRF 450
            +L G+   P++ + +V   LN    + +  LQ +E+S      + +     + LT+ FVVV + GA G++ A+ ++ FIFF+   Y     ++   +  +LK +  ++  + PH L      +I R  L+        G+ GLG +F
Sbjct:  113 ILKGISFFPYMAIGMVSIALNPIYTVFQSTLQAKEESKRYGANNFIYFLTNLTLTILFVVVFRFGALGIISALALTDFIFFIYTIYKFIPTIKVTIKKYYLKKALKYSLPLLPHSLSGWAISMIDRLFLNNQVGTDVAGVYGLGSQF 259
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BLAST of mRNA_P-wetherbeei_contig17188.1.1 vs. uniprot
Match: W0U3I1_9FIRM (Putative polysaccharide biosynthesis protein n=2 Tax=Ruminococcus bicirculans TaxID=1160721 RepID=W0U3I1_9FIRM)

HSP 1 Score: 56.6 bits (135), Expect = 3.410e-5
Identity = 38/151 (25.17%), Postives = 83/151 (54.97%), Query Frame = 1 
Query:    4 DFLLPGLPLLPFVWMAIVWALLNSNTDLQRKLLQVREQSSYSAKLSIVTSAITIALTLYFVVVLKMGAYGVVLAMLISAFIF--FLQGQYYLRDDLRGKFRTEHLKPSFHFAAGIFPHQLLSNLSPLISRSILSGYGSLAAVGLLGLGFRF 450
             +L  G+   P + +A++  + N    +   +L+ ++++  S+  SI+   +++AL ++FVV LKMGA G +LA LI+  ++  +   +  +   ++     + LK +  ++  I PH L + ++  +S+ ++S  GSLA +G+  +  +F
Sbjct:  122 KYLFSGIDYYPLILVALISLIFNCEYTIFDNILRSQQRALKSSICSIIYFFVSVALNIFFVVGLKMGALGTLLASLIAYVLYTAYFVIEMSVTHTIKFCMDLKLLKDALKYSIPIMPHNLSTQIALFVSKLLISDVGSLADLGVYSVATQF 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6A2FM65_9BACT4.240e-3246.95Oligosaccharide flippase family protein n=1 Tax=Ba... [more]
UPI001C0857212.500e-628.31oligosaccharide flippase family protein n=1 Tax=Po... [more]
UPI000C071A883.330e-525.85oligosaccharide flippase family protein n=1 Tax=Cl... [more]
W0U3I1_9FIRM3.410e-525.17Putative polysaccharide biosynthesis protein n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17188contigP-wetherbeei_contig17188:412..1450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1552123.EP57_02095
PFAMsPolysacc_synt,Polysacc_synt_C
Model size1039
Max annot lvl91061|Bacilli
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.00054
EggNOG OGsCOG2244@1|root,COG2244@2|Bacteria,1UY3W@1239|Firmicutes,4HEKE@91061|Bacilli
DescriptionPolysaccharide biosynthesis protein
Cds size522
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.3009503-CDS-P-wetherbeei_contig17188:411..9331683186110.3009503-CDS-P-wetherbeei_contig17188:411..933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17188 412..933 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.3124483-UTR-P-wetherbeei_contig17188:933..14501683186110.3124483-UTR-P-wetherbeei_contig17188:933..1450Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17188 934..1450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17188.1.1prot_P-wetherbeei_contig17188.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17188 412..933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17188.1.1

>prot_P-wetherbeei_contig17188.1.1 ID=prot_P-wetherbeei_contig17188.1.1|Name=mRNA_P-wetherbeei_contig17188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
MKAEVDKLVKHVFFFGVLLHAGVVCYGGVVIKLIAQPEFHYAAALVPGLV
IYVFFDFLSAVTGNEITFQKQTKFIFLVSLVKNAVYIGFAYLFVKEYGAQ
GIVYSLILSTVIGFILSIRKSIKLNNGFTITIHVLTNFIYLIIISVIITW
YSELSLSLNFLLGSLLFLIALVFY
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mRNA from alignment at P-wetherbeei_contig17188:412..1450-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17188.1.1 ID=mRNA_P-wetherbeei_contig17188.1.1|Name=mRNA_P-wetherbeei_contig17188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1039bp|location=Sequence derived from alignment at P-wetherbeei_contig17188:412..1450- (Phaeothamnion wetherbeei SAG_119_79)
GTAGATTTTTTACTTCCTGGTCTGCCATTATTGCCTTTTGTGTGGATGGC
CATTGTGTGGGCGCTACTGAATTCAAATACTGATCTACAGCGAAAATTAC
TCCAGGTGCGGGAGCAATCTTCTTATTCGGCAAAGCTGAGCATTGTTACT
TCTGCTATCACGATAGCGCTAACACTGTATTTTGTTGTGGTGCTTAAGAT
GGGTGCTTACGGTGTAGTGCTGGCCATGCTGATCTCCGCATTCATTTTCT
TTTTACAAGGCCAATACTATTTGCGTGATGACCTGCGGGGCAAGTTTAGA
ACGGAACACCTTAAGCCTTCTTTTCATTTTGCTGCCGGTATTTTTCCGCA
CCAGCTTTTATCCAATCTCTCGCCCTTAATAAGCCGTTCAATCCTTTCAG
GCTATGGTTCGCTCGCAGCTGTCGGCTTGCTGGGATTAGGTTTCCGGTTC
ATCGTTCCCCTCCGCCCTTACGCCAATCTATTATTCGATCCGGATTAAAG
CGGCCGATGAGTTGGTAATGAAGGCAGAAGTTGATAAGCTCGTGAAGCAT
GTTTTCTTCTTCGGGGTACTGCTGCATGCCGGTGTGGTATGCTATGGAGG
AGTGGTTATCAAGCTGATCGCGCAGCCTGAGTTTCACTATGCGGCCGCCC
TGGTGCCTGGCTTGGTGATATATGTTTTCTTTGATTTTTTATCAGCCGTA
ACGGGGAACGAAATTACATTTCAAAAACAGACAAAATTCATTTTCCTGGT
GTCGCTTGTAAAGAATGCTGTATATATCGGGTTTGCTTATCTGTTCGTTA
AAGAATACGGAGCGCAGGGGATAGTCTATTCGCTGATACTCTCTACTGTA
ATTGGATTTATTTTATCGATCAGAAAATCAATCAAGCTCAATAATGGGTT
TACGATTACGATTCATGTGCTGACAAATTTTATTTACCTGATTATAATTT
CCGTAATCATAACATGGTATAGTGAATTATCATTATCACTTAATTTCCTG
TTAGGTAGCTTGCTTTTTCTTATAGCATTAGTGTTTTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17188:412..1450-

>mRNA_P-wetherbeei_contig17188.1.1 ID=mRNA_P-wetherbeei_contig17188.1.1|Name=mRNA_P-wetherbeei_contig17188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig17188:412..1450- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCAGAAGTTGATAAGCTCGTGAAGCATGTTTTCTTCTTCGGGGT
ACTGCTGCATGCCGGTGTGGTATGCTATGGAGGAGTGGTTATCAAGCTGA
TCGCGCAGCCTGAGTTTCACTATGCGGCCGCCCTGGTGCCTGGCTTGGTG
ATATATGTTTTCTTTGATTTTTTATCAGCCGTAACGGGGAACGAAATTAC
ATTTCAAAAACAGACAAAATTCATTTTCCTGGTGTCGCTTGTAAAGAATG
CTGTATATATCGGGTTTGCTTATCTGTTCGTTAAAGAATACGGAGCGCAG
GGGATAGTCTATTCGCTGATACTCTCTACTGTAATTGGATTTATTTTATC
GATCAGAAAATCAATCAAGCTCAATAATGGGTTTACGATTACGATTCATG
TGCTGACAAATTTTATTTACCTGATTATAATTTCCGTAATCATAACATGG
TATAGTGAATTATCATTATCACTTAATTTCCTGTTAGGTAGCTTGCTTTT
TCTTATAGCATTAGTGTTTTAT
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