mRNA_P-wetherbeei_contig1718.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: D7FGQ8_ECTSI (RabGAP/TBC protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ8_ECTSI) HSP 1 Score: 259 bits (663), Expect = 3.420e-72 Identity = 214/557 (38.42%), Postives = 262/557 (47.04%), Query Frame = 2
Query: 2354 LRDIETTIPHVEVVRLPGHLCCAEYHIQVTAASPVAPWIQTSAAALLLERWTVLRRYSDFRDLYRTLPPPFVATLPPIPPKSWRSLSHITMTPEFLKDRQVALEAVLRRLLLSAADADAVVQGAVRAFLGLPAPPLGSRHDPTAGGGVGGGRRDGGNGVGLYDDPDDGGREAVMVHGSGGARGDGIGRRGGWPPLLPPGLRLSLPPPPHAPAAVGLAGSWRPAMWMVLSGAAHKAHSVGSRFQYDALVTAVAAVAGGGGSSYRGGAPRLPGKDGGVDTDCANGVSSGTGLRGAAIGVGQRKGRAASTSSHACFDDEGFDIHRRWAGDGANGNHDAALPSAGHCDVGSGGGYAAAEAAGLFEAIDVDVNRTNVRGDAERESVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIVPWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASDSADKLAGMAAAIHDADELIGLAVAE 4024
L + T IP VEVVR+ G +CCAEY +QV + W VLRRYSDF LY LP A PIPPKSWRS+S ++MTPEFL++R+VALE LRRL +SA +D VVQ +RAFLG P P G G GR G V H + R + LP L LSLP A A V L + R AMWM+LSGAAHKA R QY ALV+ TD A+ R+G +A S A A E I DVNRTNV AERE +RRVL+ FAL Y Q MN VALFLLR A GREDVAFWLL +LAT ++ + + + A A +R L ER P LL HLD LP E+L D+MLSL CR LPPTT R +D +F EG D L+++A A+L LAE +L+ A +++ LA A++ DAD LI +A +E
Sbjct: 14 LDGVVTAIPRVEVVRVSGTICCAEYQLQVKRRRG--------------DSWFVLRRYSDFLTLYERLPSDLHA---PIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADLRAFLGFP--PCG-----------GAGRLAG-----------------VDSH---------VAR---YLIRLPVDLELSLPA--RAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSV---------------------------TDEADWC---------------RRGGSAKDYSLA---------------------------------------------ARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGAGTVTIRMLLGERTPDLLEHLDR-NLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALVYIAFAVLHLAEGNLVVVQGAPATSEALANCTASMQDADRLIEIARSE 421
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE) HSP 1 Score: 257 bits (657), Expect = 6.060e-67 Identity = 228/636 (35.85%), Postives = 279/636 (43.87%), Query Frame = 2
Query: 2141 PLAGTPLF----ELVTHGIPPSLAP---PAGIGARGRGCDGDCGNGDQNVADGDELGALVRRRAHGAVAGATPGRGALLRDIETTIPHVEVVRLPGHLCCAEYHIQVTAASPVAPWIQTSAAALLLERWTVLRRYSDFRDLYRTLPPPFVATLPPIPPKSWRSLSHITMTPEFLKDRQVALEAVLRRLLLSAADADAVVQGAVRAFLGLPAPPLGSRHDPTAGGGVGGGRRDGGNGVGLYDDPDDGGREAVMVHGSGGARGDGIGRR-GGWPPLLPPGLRLSLPPPPHAPAAVGLAGSWRPAMWMVLSGAAHKAHSVGSRFQYDALVTAVAAVAGGGGSSYRGGAPRLPGKDGGVDTDCANGVSSGTGLRGAAIGVGQRKGRAASTSSHACFDDEGFDIHRRWAGDGANGNHDAALPSAGHCDVGSGGGYAAAEAAGLFEAIDVDVNRTNVRGDAERESVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIVPWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASDSADKLAGMAAAIHDADELIGLAVAE 4024
P A +P+F ELV GIPP+L P GA G + L + T IP VEVVR+ G +CCAEY +QV + W VLRRYSDF LY LP A PIPPKSWRS+S ++MTPEFL++R+VALE LRRL +SA +D VVQ VRAFLG P P G G R G+ R + +P L LSLP A A V L + R AMWM+LSGAAHKA R QY ALV+ TD A+ R+G +A S A A E I DVNRTNV AERE +RRVL+ FAL Y Q MN VALFLLR A GREDVAFWLL +LAT ++ + + + A +R L ER+P LL HLD LP E+L D+MLSL CR LPPTT R +D +F EG D LI++ALA+L LAE L+ A +++ LA A++ DAD LI +A +E
Sbjct: 466 PFAASPVFRDLKELVAQGIPPALRSANHPPSAGATGA-----------RSSXXXXXXXXXXXXXXXXXXXEGEEEAGFLDGVVTAIPRVEVVRVSGTICCAEYQLQVKRKRG--------------DSWFVLRRYSDFLRLYEHLPIDLHA---PIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADVRAFLGFP---------PCEGAG----------------------------------RLAGVDSRVAQYLIRVPVDLELSLPA--RAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSV---------------------------TDEADWC---------------RRGGSAKDYSLA---------------------------------------------ARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGTGTVTIRMLLGERMPDLLEHLDR-NLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALIYIALAVLHLAEGSLVVVQGAPATSEALAKCTASMQDADRLIEIARSE 940
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A835YP93_9STRA (Rab-GTPase-TBC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP93_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.250e-45 Identity = 87/126 (69.05%), Postives = 97/126 (76.98%), Query Frame = 2
Query: 3554 MNFVALFLLRAASGREDVAFWLLDALATRIVPWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLR 3931
MNFVALFLLR A GREDV+FWLL ALA + P Y G SM + RADL VLR LA R+P L+ LD GLPLELLA DWMLSLFCRVLPP T RVWDWL EGADVL+FVALA+LR AE+D+L+
Sbjct: 1 MNFVALFLLRTARGREDVSFWLLRALACDVAPRYWEGTTSMARLRADLGVLRGLACARMPPLVKRLDDTGLPLELLACDWMLSLFCRVLPPRTVLRVWDWLLLEGADVLVFVALAVLRFAEEDVLQ 126
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A7S2BGU4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGU4_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.590e-31 Identity = 77/180 (42.78%), Postives = 105/180 (58.33%), Query Frame = 2
Query: 3488 ESVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIVPWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASDSADKLAGMAAAIHDADELIGLAVAER 4027
+ +RR+L+ F LS IGY QAMN+VALFLLR +E AF LL LA ++VP Y M + D+ VL + +P L H+ + +PL+L A+ W++SLF LPP + R+WDWLF +G VL+ V LAI+R AE LL D A+ L A DADEL+ +A E+
Sbjct: 1 QRLRRILRAFVLSKPCIGYCQAMNYVALFLLRTTKYQEHEAFQLLLTLAEQVVPGY--WVPDMVGVQVDMQVLHKAVDIFLPDLSDHMRDIRMPLDLFAIQWLVSLFSYALPPPSLCRIWDWLFLDGPSVLVSVTLAIMRRAESGLLGLYDLQDCAELLLNTARNWRDADELVDMAYEEK 178
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A2J8ACK8_9CHLO (TBC1 domain family member 2A (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ACK8_9CHLO) HSP 1 Score: 118 bits (296), Expect = 1.700e-24 Identity = 73/201 (36.32%), Postives = 113/201 (56.22%), Query Frame = 2
Query: 3434 EAIDVDVNRTN------VRGDAERESVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIVPWYRGG-GASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASDSADKLAGMAAAIHDADELIGLA 4015
E ++VD+ RT D ++R +L ++L N +GY Q +N++ +L A E+VAFWLL L RI + G G ++ A ++ L+ L E++P L +H+ A+G L+A DW L+++C +PP TA RV D LF+EGA VL VALA+L+ AE LLR A D + + +++AD L+ +A
Sbjct: 148 EQVEVDLPRTFPGHPYLACPDTGMRAMRSILTSYSLHNPQVGYCQGLNYIVGVVLSAVERNEEVAFWLLVVLVERIC--FPGTFGHNLSGAHVEMKTLQDLIQEKLPRLGAHMAALGCDASLIATDWFLTVYCASMPPETACRVLDALFYEGAKVLFRVALALLKTAEAALLRVDNAGDFMRTVKDFVSGLYNADGLMRVA 346
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A7R9YCH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCH8_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.280e-22 Identity = 92/240 (38.33%), Postives = 123/240 (51.25%), Query Frame = 2
Query: 3416 EAAGLFEAIDVDVNRTNVRGDAERESVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASG-------REDVAFW------------------LLDALATRIVP--WYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKD---LLRSGTASDSADKLAGMAAAIHDADELIGLAVAEREEVLAA 4045
EAA F I++D+ RT RG AER S+ RVL+ FALS +GY QAMNFVALF LR +G R ++W L+ +LAT ++P W SM + D+ +L+ L P + L +GLPLE A WML+LF LP + RV D +F G+D L+FV+L +L A K+ S AS +AD +A + DAD+LI A A R AA
Sbjct: 703 EAAAAFTQIELDIQRTAARGAAERASLGRVLRAFALSRPKVGYCQAMNFVALFFLRELAGAQSAFVTRRSESWWTDGLPEDVLRNVEPLCYELMVSLATDVLPDHWVP----SMVGVQVDMRLLKTLLQLLHPDVAQTLAGIGLPLEFFASQWMLTLFSTCLPRNVSLRVMDLVFAVGSDALVFVSLVLLVKAVKNGHLTEDSDPASAAADARQAVATFL-DADDLIAEAEAARCSCAAA 937
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: UPI000C75DC7F (growth hormone-regulated TBC protein 1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75DC7F) HSP 1 Score: 109 bits (272), Expect = 1.030e-21 Identity = 64/167 (38.32%), Postives = 94/167 (56.29%), Query Frame = 2
Query: 3449 DVNRTNVRGDAERESVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIVPWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASD 3949
+VN + ++ ++ + VL FA SN +IGY Q +N++A LL A +D +FWLL ALA +I+P Y SM D VL ++ + +P L H+D + +P L+ W + L+ VLP T RVWD LF EG+ VL VAL IL++ EK+ L +D
Sbjct: 122 NVNFDSTNPNSMQKPLLNVLTAFANSNPSIGYCQGLNYIAGLLLLATRD-QDSSFWLLKALAEKILPDYYSP--SMPGLTTDFKVLAEISRKDIPLLARHIDGLQMPWALICSKWFICLYAEVLPTETVLRVWDCLFAEGSKVLFRVALTILKIHEKEFLEKRDFAD 285
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A8J5XCL6_DIALT (Rab-GAP TBC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCL6_DIALT) HSP 1 Score: 111 bits (278), Expect = 5.960e-21 Identity = 72/178 (40.45%), Postives = 96/178 (53.93%), Query Frame = 2
Query: 3494 VRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIVPWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASDSADKLAGMAAAIHDADELIGLAVAER 4027
+RRVL FA +A IGY Q M F+A LL A +VAFWLL A ATR++P A M R D VLR L +R+P L HLDA G E+ + W+L F +P T R+WD LF +G L A+A+L E+ LL + S+ LA + ++ DAD L+ L + R
Sbjct: 168 LRRVLTAFAQHDAHIGYVQGMGFIAGLLLIVADYEAEVAFWLLVAFATRLLPLDYLTPA-MLGLRTDQLVLRLLVGQRLPRLARHLDAAGALPEVYSTKWLLCAFVAAMPVHTVLRIWDALFADGNAALFRAAIALLASHERTLLATSDQSELLTLLAALPRSVVDADALLALGYSRR 344
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A251VDW3_HELAN (Putative rab-GTPase-TBC domain-containing protein n=3 Tax=Asteroideae TaxID=102804 RepID=A0A251VDW3_HELAN) HSP 1 Score: 103 bits (257), Expect = 1.720e-19 Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 2
Query: 3491 SVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIV--PWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASDSADKLAGMAAAIHDADELIGLA 4015
+VRRVL ++ ++ +GY Q +N+VA LL E+ AFW+L L ++ Y ++ D V + L ++ P L +HLDA+G + L+A +W L LF + LP T RVWD LF+EGA VL +VALA+ ++ E++LL + D+ + D D+L+ +A
Sbjct: 176 AVRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEE-AFWMLAVLLENVLVNDCYTD---NLSGCHVDQRVFKDLLTKKCPRLSAHLDAIGFDVSLVATEWFLCLFSKSLPSETTMRVWDVLFYEGASVLFYVALAVFKIKEEELLMTHHVGDAIKIIQNTTHHQFDPDDLLTVA 348
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Match: A0A5N6LGY5_9ASTR (Rab-GAP TBC domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LGY5_9ASTR) HSP 1 Score: 98.2 bits (243), Expect = 6.590e-19 Identity = 59/177 (33.33%), Postives = 99/177 (55.93%), Query Frame = 2
Query: 3491 SVRRVLKCFALSNAAIGYTQAMNFVALFLLRAASGREDVAFWLLDALATRIV--PWYRGGGASMRQARADLAVLRRLAAERVPALLSHLDAMGLPLELLAMDWMLSLFCRVLPPTTAARVWDWLFFEGADVLIFVALAILRLAEKDLLRSGTASDSADKLAGMAAAIHDADELIGLA 4015
S+RRVL ++ ++ +GY Q +N+VA LL ED AFW+L L ++ Y +++ + V + L ++ P + +HL+A+ + L+A +W L LF + LP T RVWD LF+EGA VL+ +ALAI ++ E++L+ + D + + + D DEL+ +A
Sbjct: 21 SLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEED-AFWMLAVLLENVLVNDCY---SSNLSGCHVEQRVFKDLLKKKCPRVHAHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLLNMALAIFKMKEEELITTNHVGDVINIIQTTTHHLFDPDELLDVA 193 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1718.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1718.1.2 >prot_P-wetherbeei_contig1718.1.2 ID=prot_P-wetherbeei_contig1718.1.2|Name=mRNA_P-wetherbeei_contig1718.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1648bp MLLLQVRIAQLTSCRGLDAADKGPAGVRVAACFQGKHFFTESCHNLQRPMback to top mRNA from alignment at P-wetherbeei_contig1718:306..6726+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1718.1.2 ID=mRNA_P-wetherbeei_contig1718.1.2|Name=mRNA_P-wetherbeei_contig1718.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=6421bp|location=Sequence derived from alignment at P-wetherbeei_contig1718:306..6726+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1718:306..6726+ >mRNA_P-wetherbeei_contig1718.1.2 ID=mRNA_P-wetherbeei_contig1718.1.2|Name=mRNA_P-wetherbeei_contig1718.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=4944bp|location=Sequence derived from alignment at P-wetherbeei_contig1718:306..6726+ (Phaeothamnion wetherbeei SAG_119_79)back to top |