mRNA_P-wetherbeei_contig17174.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17174.1.2
Unique NamemRNA_P-wetherbeei_contig17174.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 7.820e-105
Identity = 184/323 (56.97%), Postives = 222/323 (68.73%), Query Frame = 1
Query:    1 FLRALTNGARGGNVLVCYGSSXXXXXXXXXXXXXXXXSECSEAVXXXXXXXXXXXDGEPYFKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYSVGG-GGGWGPLKKGGAL----------LLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDRATGAG---AGREYYQSICMRAVNQSIGRSIRH 927
            FL ALTN +R G VL  +G                XX   + A            + EP  KF+MLNP+VHF +I+++ARA+VLVGGTM+P   LV+QLF      R+E+FSCGHV+P ENLLPLCV++GPSG  F+FTF +R TD Q+ ELGRL+ NVC +VPGGVV FLASYGYL++VL+RWKASG L QL+  K VF EPR+A+DVD VL ++S+    G W P                 LLSVVGAKMSEGINF+DD+ARCVVMVGLPYPD RD EL+Q+MAYLD A+ +    AGREYY SICMRAVNQSIGRSIRH
Sbjct:  705 FLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXRGATA-----GQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLSKLKSVFSEPRSAKDVDAVLREFSLAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSRGRAGREYYSSICMRAVNQSIGRSIRH 1022          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: A0A7S2RUD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUD0_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.780e-92
Identity = 153/261 (58.62%), Postives = 185/261 (70.88%), Query Frame = 1
Query:  184 KFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYSVGGGGGWGPLKKG---GALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDR----ATGAGA------GREYYQSICMRAVNQSIGRSIRH 927
            KFI+LNP+VHF  ++ EA AVVLVGGTM+P   +++ LFP  P+ RL  F+CGHV+ PEN+ PL VARGP+ V+FDF F+ RAT  Q+ ELGRLL NVCTV P GVV FL SY Y  + +  W   G L +L  RK+VF EPR++ DVD VLA YS        P       GALL  VVGAKMSEGINF+DD+ARCVVMVGLPYPD  DPEL+Q+MA+LD     A+GA A      G EYY+++CMRAVNQSIGR+IRH
Sbjct:  216 KFIVLNPAVHFQQVVDEAHAVVLVGGTMQPFEHVIQNLFPSVPQSRLHTFTCGHVIAPENIRPLAVARGPTNVRFDFRFQSRATPEQLDELGRLLVNVCTVTPAGVVCFLPSYDYERKAVDHWTLQGTLRRLKERKRVFREPRSSADVDAVLASYSQAIANCENPRPGSAVTGALLFCVVGAKMSEGINFSDDLARCVVMVGLPYPDRSDPELQQKMAFLDSRPRGASGAAASPAQSAGSEYYENLCMRAVNQSIGRAIRH 476          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA)

HSP 1 Score: 303 bits (776), Expect = 6.590e-92
Identity = 162/288 (56.25%), Postives = 197/288 (68.40%), Query Frame = 1
Query:  175 PYFKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDR--------------------------------LELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYS--VGGGGGWGPLKKGGALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDRATGAG---AGREYYQSICMRAVNQSIGRSIRH 927
            P  KFIMLNP+VHFA+I REARAVVL+GGTM+P   + +QLFP     R                                LE+FSCGHV+PPEN+LPLCV+RGPSG  F+FTF +R +  Q+ EL RLL+NVC +VPGGVV FL S+GY+E+VL+ WKASG L QL+ RK +F EPRAA +V+ +LA YS  +    G          LLSVVGAKMSEGINF+DD+ARCVVMVG+P+PD+RDPELRQ++ Y D A  AG   AGR  YQ++CMRAVNQSIGR IRH
Sbjct:  667 PSLKFIMLNPAVHFAEIAREARAVVLIGGTMQPAGAIAQQLFPGIAPRRAAXXXXXXXXXXXXXXXXQXASSESEGAAAGGLEVFSCGHVIPPENILPLCVSRGPSGGVFNFTFAKRGSPEQMDELCRLLSNVCALVPGGVVCFLPSFGYMEQVLQCWKASGALHQLSKRKAIFSEPRAATEVESILAAYSAAIHRSSGXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGMPFPDARDPELRQKIEYADAADPAGGGRAGRALYQAMCMRAVNQSIGRCIRH 954          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: A0A4D9CWW8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWW8_9STRA)

HSP 1 Score: 295 bits (756), Expect = 1.610e-89
Identity = 155/278 (55.76%), Postives = 193/278 (69.42%), Query Frame = 1
Query:  184 KFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYSVGGGGGWGPLKKG-------GALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDR-----------------------ATGAGAGREYYQSICMRAVNQSIGRSIRH 927
            KFIMLN +VHF +I+ EAR+VVLVGGTM+PVAP+V QLFPD P  RL++FSCGHV+PP+NLL LC+++GP+G+ FDFT + R    Q+ ELGRLL NV TV PGG+VVFL SY Y E+++ RW+ S  L++L ++K +F EP+ A+DV+  L  YS     G    K+        GA+L  VVGAKMSEGINFAD MAR VVMVGLPYPD RDPEL+Q+M YLD                        A GA  G+ YYQ++CMRAVNQSIGR+IRH
Sbjct:  605 KFIMLNAAVHFREIVSEARSVVLVGGTMQPVAPIVAQLFPDLPISRLDVFSCGHVIPPQNLLALCMSKGPTGIDFDFTHKSRGLVQQMDELGRLLLNVSTVTPGGLVVFLPSYAYEEKLMTRWRESNLLSKLRSKKSIFSEPKQAKDVEATLQAYSAAIAEGEIHRKEECSGSGSVGAILFCVVGAKMSEGINFADGMARGVVMVGLPYPDRRDPELQQKMQYLDSLQFFKGAAAANDNTMPSKREKCIAIGATCGKTYYQNLCMRAVNQSIGRAIRH 882          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: A0A5D6Y0V7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V7_9STRA)

HSP 1 Score: 286 bits (732), Expect = 3.820e-86
Identity = 144/268 (53.73%), Postives = 195/268 (72.76%), Query Frame = 1
Query:  172 EPYFKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYSV------------GGGGGWGPLKKGGA----LLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDRATGAGAGREYYQSICMRAVNQSIGRSIRH 927
            E   KFI +NP+VHF +I+ +AR+V+L GGTM+PVA ++ QLFP  PR R++LFSCGHV+PP+NL+   ++ GPS    +FTF +R   + + ELGR++ N+  +VPGG+VVF  SY + E V+ RW+A+ Q  +++ARKKVF EP+ + ++  VLA YS             GGGGG    + GGA    +LLSVVG KMSEGINF+D++ARCVVMVGLPYP++RD EL ++MA+LDR +  GAGR YY+S+CM+AVNQSIGRSIRH
Sbjct:  600 EGAIKFIQMNPAVHFEEIVAKARSVILAGGTMQPVAQVIDQLFPFVPRARIDLFSCGHVIPPQNLVGFSLSSGPSQQHLEFTFARRGDTVALDELGRVVLNLARIVPGGIVVFFPSYRFEEAVVARWQATTQFGEIDARKKVFREPKQSDELASVLAQYSAACRPLPERGNSSGGGGGLAYERAGGASRGAVLLSVVGGKMSEGINFSDELARCVVMVGLPYPNARDAELVEKMAFLDRRS-PGAGRRYYESLCMKAVNQSIGRSIRH 866          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: A0A1B6I3H7_9HEMI (HELICc2 domain-containing protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6I3H7_9HEMI)

HSP 1 Score: 266 bits (679), Expect = 1.780e-84
Identity = 121/257 (47.08%), Postives = 187/257 (72.76%), Query Frame = 1
Query:  169 GEPYFKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRD--RLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADY--SVGGGGGWGPLKKGGALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDRATGAGAGREYYQSICMRAVNQSIGRSIRH 927
            G    K+++LNP+ HFADI+++AR+VV+ GGTM+PV+   +QLF     D  R+  FSCGHV+PP+++LP+ +  GP+G  FDF+++ R     + E GR+L+N+C +VPGG++ F +SY Y + V + +  SG + +L+ +KKVF EPR A  VD+VL+D+  S+        +K  GALL SVVG K+SEG+NF+DD+ RCV++VG+PYP+ + PEL+++M+YLD+  G  AG+++Y+++CM+AVNQ IGR++RH
Sbjct:    5 GRGTLKYLLLNPAAHFADIVQQARSVVVAGGTMQPVSEFREQLFTAAGADVERITQFSCGHVIPPDHILPIVLCSGPTGKPFDFSYQNRNCVTVMTEFGRILDNICNIVPGGIICFFSSYDYEQTVYQHFVKSGTVDKLSTKKKVFREPRKANQVDQVLSDFAASINNAKKNPQIKPNGALLFSVVGGKLSEGLNFSDDLGRCVIVVGMPYPNVKSPELQEKMSYLDKTLGGNAGQQHYENLCMKAVNQCIGRAVRH 261          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: K3W6Y0_GLOUD (Helicase ATP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Y0_GLOUD)

HSP 1 Score: 280 bits (716), Expect = 7.280e-84
Identity = 137/252 (54.37%), Postives = 187/252 (74.21%), Query Frame = 1
Query:  172 EPYFKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYSVGGGGGWGPLKKGGALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDRATGAGAGREYYQSICMRAVNQSIGRSIRH 927
            E   KFI++NP++HF +I+ +AR+V+L GGTM+PV+ ++ QLF   PRDR++LFSCGHV+PP+NL+   ++ GPS    +FTF +R     + ELGR+L N+  +VPGG+VVF  SY + E  ++RW+ + Q   LNARK+VF EP+   ++ RVL+ YS       G     GA+LLSVVG KMSEGINF+DD+ARCVVMVGLPYP++RD EL ++M +LD+ T  GAGR+YY+S+CM+AVNQSIGRSIRH
Sbjct:  607 EGAIKFILMNPAIHFEEIVEKARSVILAGGTMQPVSQVIDQLFSKIPRDRIDLFSCGHVIPPKNLVGFSLSNGPSQRHLEFTFARRGDTEALDELGRILLNLARIVPGGIVVFFPSYRFEEMTVQRWQTTTQFHDLNARKQVFREPKQTDELARVLSQYSAACTSPCGR----GAMLLSVVGGKMSEGINFSDDLARCVVMVGLPYPNARDAELVEKMEFLDKRT-PGAGRQYYESLCMKAVNQSIGRSIRH 853          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: A0A1Y1II53_KLENI (DNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II53_KLENI)

HSP 1 Score: 275 bits (703), Expect = 5.620e-82
Identity = 150/302 (49.67%), Postives = 190/302 (62.91%), Query Frame = 1
Query:  169 GEPY---FKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADY--------------SVG-GGGGWGPL-KKGGALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDRA------------------------TGA------GAGREYYQSICMRAVNQSIGRSIRH 927
            G+P+    KF+MLN + HF  I+ +ARA+VL GGT++P + L ++LFP  P  RL  FSCGH+VP E++LP+ + +GP+G  FDF F  R     I ELGRLL+N+CTVVPGG+V F  S+ Y + V K W+A+G LA + A+K VF EPR A +V+  L  Y              S G G GG G L KKGGA+LLSVVG KMSEGINF+DDM RCVVMVGLPYP   DPEL++RM YL+R                          GA      G G EYY+++CM+AVNQSIGR+IRH
Sbjct:  560 GQPHEATLKFVMLNAAKHFQPIVNDARAIVLAGGTLQPTSELRERLFPQVPDVRLRFFSCGHIVPRESVLPIALRQGPTGRLFDFRFESRGAPAMIEELGRLLSNLCTVVPGGLVCFFPSFAYADHVAKSWEAAGILASIRAKKAVFTEPRTAAEVESTLDRYRACIVGSAGMSSAFSAGTGSGGSGKLGKKGGAVLLSVVGGKMSEGINFSDDMGRCVVMVGLPYPSKTDPELQERMQYLERGLDLTQLGLSPSADGLGPETPGGERVGAAVTVRKGRGHEYYENLCMKAVNQSIGRAIRH 861          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: A0A822DXH2_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DXH2_9NEOB)

HSP 1 Score: 262 bits (670), Expect = 1.070e-81
Identity = 132/257 (51.36%), Postives = 181/257 (70.43%), Query Frame = 1
Query:  184 KFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLF--PDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYSVG---GGGGWGPLKKGGALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLD----RATGAGAGREYYQSICMRAVNQSIGRSIRH 927
            KF+MLNP+VHFA++LRE RAV++ GGTM+PV+   +QL        +R+  FSCGHV+PPEN+LP+ +  GP+  Q +FT+ +R     + E GR+L N+C VVPGG+V F  SY Y + +L  W+ +G + +L  +KK+F EP+ A  VD+VL++YS      G   GPL   GALL SVVG KMSEGINF+DD+ RCVVMVG+PYP+ R PEL+++M+YLD    R  G  AG+   +++CM+AVNQSIGR+IRH
Sbjct:   99 KFLMLNPAVHFAEVLRECRAVIIAGGTMQPVSDFKQQLLMAAGLQPERIVEFSCGHVIPPENILPIVLCSGPTNQQLEFTYEKRGRPDMMDETGRILANLCNVVPGGLVCFFPSYEYEKLILDHWEKTGTMKRLAGKKKIFQEPKQASRVDQVLSEYSRCIKLSGRSAGPLT--GALLFSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIRSPELQEKMSYLDHTLPRTDGGSAGKTLIENLCMKAVNQSIGRAIRH 353          
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Match: D0MZY5_PHYIT (ATP-dependent RNA helicase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZY5_PHYIT)

HSP 1 Score: 271 bits (693), Expect = 3.090e-81
Identity = 129/252 (51.19%), Postives = 185/252 (73.41%), Query Frame = 1
Query:  172 EPYFKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLFPDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIAELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVFCEPRAARDVDRVLADYSVGGGGGWGPLKKGGALLLSVVGAKMSEGINFADDMARCVVMVGLPYPDSRDPELRQRMAYLDRATGAGAGREYYQSICMRAVNQSIGRSIRH 927
            E   +FI+LNP++HF +I+ ++R+V+L GGTM+PV+ ++ QLF   PR+ ++LFSCGHV+PP+NLL   +A GPS    +FT+ QR     + ELGR+L N+  +VPGG+VVF  SY + E  ++RW+A+ Q  Q+ A+K +F EP+ + ++  VL  YS             GA+LLSVVG KMSEGINF+D++ARCVVMVG+PYP++RD EL ++MA+LD+ T  G+GR++Y+S+CM+AVNQSIGRSIRH
Sbjct:  515 EGLIRFILLNPAIHFQEIVNKSRSVILAGGTMQPVSQVIDQLFSSIPREHIDLFSCGHVIPPKNLLGFSLASGPSQKHLEFTYSQRGDMEALDELGRILLNLLRIVPGGIVVFFPSYRFEESAVRRWQATKQYEQIQAKKAIFSEPKKSDELAEVLMQYSAACS-----RSGNGAVLLSVVGGKMSEGINFSDELARCVVMVGMPYPNARDAELVEKMAFLDKIT-PGSGRQFYESLCMKAVNQSIGRSIRH 760          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17174.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI7.820e-10556.97Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S2RUD0_9STRA1.780e-9258.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YWY4_9STRA6.590e-9256.25Helicase C-terminal domain-containing protein n=1 ... [more]
A0A4D9CWW8_9STRA1.610e-8955.76Helicase ATP-binding domain-containing protein n=2... [more]
A0A5D6Y0V7_9STRA3.820e-8653.73Helicase ATP-binding domain-containing protein n=1... [more]
A0A1B6I3H7_9HEMI1.780e-8447.08HELICc2 domain-containing protein (Fragment) n=1 T... [more]
K3W6Y0_GLOUD7.280e-8454.37Helicase ATP-binding domain-containing protein n=1... [more]
A0A1Y1II53_KLENI5.620e-8249.67DNA helicase n=1 Tax=Klebsormidium nitens TaxID=10... [more]
A0A822DXH2_9NEOB1.070e-8151.36(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
D0MZY5_PHYIT3.090e-8151.19ATP-dependent RNA helicase, putative n=2 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17174contigP-wetherbeei_contig17174:5..1450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPY7
Preferred nameCHL1
PFAMsDEAD_2,Helicase_C_2
Model size927
Max annot lvl2759|Eukaryota
KEGG koko:K11273
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
Exons4
Evalue1.28e-105
EggNOG OGsCOG1199@1|root,KOG1133@2759|Eukaryota
Ec32 ortholog descriptionDNA helicase (DNA repair), Rad3 type
Ec32 orthologEc-15_001630.1
EC3.6.4.13
DescriptionATP-dependent DNA helicase activity
Cds size927
COG categoryKL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.005979-CDS-P-wetherbeei_contig17174:4..1221683186110.005979-CDS-P-wetherbeei_contig17174:4..122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17174 5..122 +
1683186110.0168223-CDS-P-wetherbeei_contig17174:185..5281683186110.0168223-CDS-P-wetherbeei_contig17174:185..528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17174 186..528 +
1683186110.0258527-CDS-P-wetherbeei_contig17174:837..10271683186110.0258527-CDS-P-wetherbeei_contig17174:837..1027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17174 838..1027 +
1683186110.0348773-CDS-P-wetherbeei_contig17174:1174..14501683186110.0348773-CDS-P-wetherbeei_contig17174:1174..1450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17174 1175..1450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17174.1.2prot_P-wetherbeei_contig17174.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17174 5..1450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17174.1.2

>prot_P-wetherbeei_contig17174.1.2 ID=prot_P-wetherbeei_contig17174.1.2|Name=mRNA_P-wetherbeei_contig17174.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=309bp
FLRALTNGARGGNVLVCYGSSSSGGGGGDSGRGGGGGSECSEAVGTSGGS
GGGGDDGEPYFKFIMLNPSVHFADILREARAVVLVGGTMRPVAPLVKQLF
PDTPRDRLELFSCGHVVPPENLLPLCVARGPSGVQFDFTFRQRATDIQIA
ELGRLLNNVCTVVPGGVVVFLASYGYLEEVLKRWKASGQLAQLNARKKVF
CEPRAARDVDRVLADYSVGGGGGWGPLKKGGALLLSVVGAKMSEGINFAD
DMARCVVMVGLPYPDSRDPELRQRMAYLDRATGAGAGREYYQSICMRAVN
QSIGRSIRH
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mRNA from alignment at P-wetherbeei_contig17174:5..1450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17174.1.2 ID=mRNA_P-wetherbeei_contig17174.1.2|Name=mRNA_P-wetherbeei_contig17174.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1446bp|location=Sequence derived from alignment at P-wetherbeei_contig17174:5..1450+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCTCCGGGCGCTCACAAATGGTGCCCGGGGCGGCAACGTCCTGGTATG CTACGGCAGCAGCAGTAGCGGCGGCGGCGGCGGCGACAGCGGACGCGGTG GCGGCGGCGGCAGCGAATGTAGCGGCGGCAAGACCAGCAGCAGTAGCAGC AACGGCAATGGTGGTGGCGGCGACGGCGGAGGTTCGGAGGCGGTGGGAAC CAGCGGCGGCAGCGGCGGCGGCGGCGACGACGGCGAGCCATACTTCAAGT TTATCATGCTGAACCCGTCCGTCCACTTCGCCGACATCCTGCGGGAGGCG CGCGCCGTCGTGCTGGTGGGCGGCACGATGCGGCCCGTCGCGCCGCTGGT CAAGCAGCTCTTCCCGGACACGCCTAGGGACCGGCTGGAGCTCTTTTCGT GTGGCCATGTAGTGCCGCCCGAGAACCTGCTGCCGCTGTGCGTGGCGCGC GGGCCGAGTGGCGTGCAGTTCGACTTTACGTTTCGACAGCGGGCCACGGA CATCCAGATTGCTGAGCTGGGAAGGTGAGATGTCGTTGTCTCTGTGTACA GATGGTTTGTTACCCTTGTAATTTCGCTGCAACGAATAGAAGATGTCACG GCAGAGCAGAGAAGACTATGTATCCTCGCTGTAGAGTTGAATGACTGTTT TCTGTCTGCCAAGCCCTTTTTTCATTCCTCCTCGCATGAATGTCTTCCGC CTGCCTGGTACTAAGCATTGCAATCAACCTCCAATTCCCTTAGGCCACCG ATCTTTTGCTTTCCACAGCTGCGGCCTGATCAATTCCTGCCGCCCGCCGA TCGCTCTCGCGATTTCCCCGCGCCGGCTCGCAGGCTGCTCAATAACGTGT GCACGGTGGTGCCGGGTGGCGTCGTCGTCTTCCTCGCCTCCTACGGCTAC CTCGAGGAAGTTTTGAAGCGCTGGAAGGCATCGGGGCAGCTAGCACAGCT CAATGCCCGCAAAAAGGTCTTCTGCGAGCCGCGCGCTGCCCGCGACGTCG ACCGCGTCCTCGCCGACTACTCCGTCGCCGCCTGCGCCGGCGGCGGCGGA ACTGCCGGCGGTGGCGGCGGAACTGCCGGCGGTGGCGGCGGGATCGCTGG CGACGGCGGCGGCAGCGGGATGGCTGGCAGCGGCGGCAGCGGGATGACGG GCGGCAGCGGAATGGGAAAGGTTGGCGGCGGCGGCGGCTGGGGTCCGCTG AAGAAGGGCGGCGCGCTGCTGTTGAGCGTCGTGGGCGCCAAGATGAGCGA AGGCATCAACTTCGCCGACGACATGGCGCGCTGCGTCGTCATGGTTGGCC TGCCCTACCCGGACAGTCGCGACCCCGAGCTGCGGCAGCGCATGGCGTAC CTTGACCGCGCCACCGGCGCCGGCGCGGGCCGCGAGTACTACCAGTCCAT CTGCATGCGGGCGGTGAACCAGAGCATTGGCCGCAGCATCCGGCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17174:5..1450+

>mRNA_P-wetherbeei_contig17174.1.2 ID=mRNA_P-wetherbeei_contig17174.1.2|Name=mRNA_P-wetherbeei_contig17174.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig17174:5..1450+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCTCCGGGCGCTCACAAATGGTGCCCGGGGCGGCAACGTCCTGGTATG
CTACGGCAGCAGCAGTAGCGGCGGCGGCGGCGGCGACAGCGGACGCGGTG
GCGGCGGCGGCAGCGAATGTTCGGAGGCGGTGGGAACCAGCGGCGGCAGC
GGCGGCGGCGGCGACGACGGCGAGCCATACTTCAAGTTTATCATGCTGAA
CCCGTCCGTCCACTTCGCCGACATCCTGCGGGAGGCGCGCGCCGTCGTGC
TGGTGGGCGGCACGATGCGGCCCGTCGCGCCGCTGGTCAAGCAGCTCTTC
CCGGACACGCCTAGGGACCGGCTGGAGCTCTTTTCGTGTGGCCATGTAGT
GCCGCCCGAGAACCTGCTGCCGCTGTGCGTGGCGCGCGGGCCGAGTGGCG
TGCAGTTCGACTTTACGTTTCGACAGCGGGCCACGGACATCCAGATTGCT
GAGCTGGGAAGGCTGCTCAATAACGTGTGCACGGTGGTGCCGGGTGGCGT
CGTCGTCTTCCTCGCCTCCTACGGCTACCTCGAGGAAGTTTTGAAGCGCT
GGAAGGCATCGGGGCAGCTAGCACAGCTCAATGCCCGCAAAAAGGTCTTC
TGCGAGCCGCGCGCTGCCCGCGACGTCGACCGCGTCCTCGCCGACTACTC
CGTTGGCGGCGGCGGCGGCTGGGGTCCGCTGAAGAAGGGCGGCGCGCTGC
TGTTGAGCGTCGTGGGCGCCAAGATGAGCGAAGGCATCAACTTCGCCGAC
GACATGGCGCGCTGCGTCGTCATGGTTGGCCTGCCCTACCCGGACAGTCG
CGACCCCGAGCTGCGGCAGCGCATGGCGTACCTTGACCGCGCCACCGGCG
CCGGCGCGGGCCGCGAGTACTACCAGTCCATCTGCATGCGGGCGGTGAAC
CAGAGCATTGGCCGCAGCATCCGGCAC
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