mRNA_P-wetherbeei_contig17165.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17165.1.1
Unique NamemRNA_P-wetherbeei_contig17165.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A836Q2D0_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836Q2D0_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 3.390e-12
Identity = 55/201 (27.36%), Postives = 98/201 (48.76%), Query Frame = 1
Query:  301 VSVYARSPHTDGCYALVMEGMGYLPAAVKRHLIRSGVTLVLTPTLQQLTGQVGASR--------------YDTKRKRAIVCERSDGHESDAENDPRLSITTLHELGHAYDWSLGRFALTAAFLGAYDKEAPAVPEQDRQILAHFLQPGQHGPSECFASLFVAKYYRP-HDRRIDT-----LKRCFPNTFEIVKA---IPDT 834
            + V+  + ++D    +    +  LP +V R L + GV++V+ PT ++   ++  +               +D  +K A++CE  DG +   ++   L    LHELGHAYD S+GR + + AF   + ++  A P + R+ L  F      G S+ FA +F  +Y  P  D+ +D+     + + FP  FE +K    +P+T
Sbjct:  496 IKVFRHTENSDFGKEMASTALTLLPDSVIRTLTKFGVSIVIAPTSKEYMIELAKNNPKASHQKIVEIQGFFDPWQKEAVLCE--DGMKP-TDSKEYLKHLVLHELGHAYDSSIGRVSSSVAFKLRFAQDVEAQPAEIRKKLHGFRDSDLSGCSQLFAEIFAYRYMYPTEDKSVDSNSQRKIAQYFPRCFEYLKTKCPLPET 693          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A257S8X5_9PROT (Peptidase S41 n=1 Tax=Acidiphilium sp. 21-60-14 TaxID=1970292 RepID=A0A257S8X5_9PROT)

HSP 1 Score: 65.5 bits (158), Expect = 2.020e-8
Identity = 37/82 (45.12%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    4 LGLRV-DATG--KIVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAGALQ--TVTMIRA 234
            LGL V +A+G  K++    D+PA KAG++PGD IVA+N   +VGLS +Q V+ +RG++G  ++L  +RAG  +  T T++RA
Sbjct:  104 LGLEVSEASGFIKVITPIDDTPAAKAGIKPGDLIVAINNKPLVGLSLNQAVNDMRGKVGSPITLTIKRAGIEKPITATLVRA 185          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A1F7V9D5_9BACT (PDZ domain-containing protein n=1 Tax=Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_48_18 TaxID=1802408 RepID=A0A1F7V9D5_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.530e-7
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   34 IVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAG--ALQTVTMIR 231
            IV    DSPAEKAGL+PGD+IV +++T   G+S  + VS +RGE G  V LQ  R G  AL+ + +IR
Sbjct:  142 IVAPLEDSPAEKAGLEPGDWIVTIDKTETSGMSVEEAVSKIRGEEGTEVVLQISRKGLEALKEIKIIR 209          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A2D7T1U7_9RICK (Peptidase S41 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2D7T1U7_9RICK)

HSP 1 Score: 62.0 bits (149), Expect = 2.510e-7
Identity = 27/63 (42.86%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   31 KIVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAGALQTV 219
            K++    D+PA+KAG++PGDFI  ++ T V+GLS ++ V LLRG +G+S++++  R G   T+
Sbjct:  104 KVISPIDDTPAQKAGVRPGDFITHIDDTDVLGLSLTEAVDLLRGPVGKSITIKVVRIGQEDTI 166          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A7C1JRZ8_9CHLR (S41 family peptidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1JRZ8_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 2.720e-7
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    4 LGLRVDATG---KIVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAG 204
            +G  VD+      IV    DSPAEKAGLQPGD IV VN   V GL   + + L+RG  G +V L+ RRAG
Sbjct:  122 IGAEVDSRNGELTIVAPLPDSPAEKAGLQPGDVIVTVNGRDVTGLPLLEAIMLVRGPAGTTVHLEVRRAG 191          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A3C1A542_9CHLR (PDZ domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3C1A542_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 2.760e-7
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   34 IVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAGALQTVTM 225
            +V    DSPA +AG++PGD IVAV+ T + GLS+++ V L+RG +G  V L  RR G L+ + +
Sbjct:  136 VVTPFRDSPASRAGIRPGDIIVAVDGTEIFGLSQNEAVLLIRGPVGSKVELTIRREGELEPLIL 199          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A1V5YKS3_9CHLR (Carboxy-terminal processing protease CtpB n=1 Tax=Chloroflexi bacterium ADurb.Bin180 TaxID=1852857 RepID=A0A1V5YKS3_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 4.240e-7
Identity = 28/68 (41.18%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   31 KIVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAGALQTVTMIRA 234
            ++V+     PAEK  LQPGD ++AV+ TS+ G+S+++ ++L+RGE+G  V+L+ R  G    +T+ RA
Sbjct:   86 QVVKLIPGGPAEKTVLQPGDVVLAVDGTSIHGMSQNEAIALIRGEVGTQVTLRVRHEGQEMDLTLTRA 153          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A3E0QBC6_9PROT (S41 family peptidase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3E0QBC6_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 4.490e-7
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   31 KIVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAGALQTVT 222
            K++    D+PA KAGL+ GD+IV +N T V G S S+ V L+RG +G S+ L  RR G  + +T
Sbjct:  104 KVISPIDDTPASKAGLKAGDYIVKINDTQVQGKSLSEAVDLMRGPVGSSIELTVRRRGEKKALT 167          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: A0A1C6BUK5_9FIRM (Carboxy-terminal processing protease CtpB n=2 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1C6BUK5_9FIRM)

HSP 1 Score: 61.2 bits (147), Expect = 4.620e-7
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    4 LGLRVDATGK----IVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRA-GALQTVTMIRAALGSLKTAPVK 267
            +G+ V+ T +    ++  T D PA++AGLQ GD I+AV+ TS+ G +R    +L++GE G SV L+ + A G+++TVT  RA    L+T PV+
Sbjct:  100 IGVTVNYTSEDGLTVIGITEDGPADQAGLQIGDIIIAVDGTSLAGEARYDGANLIQGETGTSVELEVKGADGSVRTVTATRA---QLETDPVE 189          
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Match: T0CH72_9PROT (Peptidase, S41 family n=2 Tax=Bacteriovoracales TaxID=2024979 RepID=T0CH72_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 5.110e-7
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 1
Query:    1 YLGLRVDATGK-----IVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVSLLRGELGESVSLQYRRAGALQTVTMIRAALGSLKTAPVK 267
            Y GL ++ T K     I     DSPAEKAGL PGD IV +N  S +G++  + V  ++GELG  ++L   RAG  + +   +     +KT PVK
Sbjct:   88 YGGLGIEVTQKDGVLVITTPIEDSPAEKAGLLPGDKIVEINNESTIGITLDEAVDRMKGELGTVINLGILRAGE-KDIRNFKVKRQKIKTKPVK 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17165.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836Q2D0_9BACT3.390e-1227.36Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A257S8X5_9PROT2.020e-845.12Peptidase S41 n=1 Tax=Acidiphilium sp. 21-60-14 Ta... [more]
A0A1F7V9D5_9BACT1.530e-750.00PDZ domain-containing protein n=1 Tax=Candidatus U... [more]
A0A2D7T1U7_9RICK2.510e-742.86Peptidase S41 n=1 Tax=Rickettsiales bacterium TaxI... [more]
A0A7C1JRZ8_9CHLR2.720e-750.00S41 family peptidase n=1 Tax=Chloroflexi bacterium... [more]
A0A3C1A542_9CHLR2.760e-745.31PDZ domain-containing protein n=1 Tax=Chloroflexi ... [more]
A0A1V5YKS3_9CHLR4.240e-741.18Carboxy-terminal processing protease CtpB n=1 Tax=... [more]
A0A3E0QBC6_9PROT4.490e-745.31S41 family peptidase n=2 Tax=Proteobacteria TaxID=... [more]
A0A1C6BUK5_9FIRM4.620e-740.86Carboxy-terminal processing protease CtpB n=2 Tax=... [more]
T0CH72_9PROT5.110e-739.36Peptidase, S41 family n=2 Tax=Bacteriovoracales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17165contigP-wetherbeei_contig17165:226..1062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog220668.lp_1864
Preferred namectpA
PFAMsPDZ,PDZ_2,PG_binding_1,Peptidase_S41
Model size837
Max annot lvl91061|Bacilli
KEGG koko:K03797
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.63e-08
EggNOG OGsCOG0793@1|root,COG3409@1|root,COG0793@2|Bacteria,COG3409@2|Bacteria,1TPBI@1239|Firmicutes,4HAKE@91061|Bacilli,3F3SS@33958|Lactobacillaceae
EC3.4.21.102
DescriptionBelongs to the peptidase S41A family
Cds size837
COG categoryM
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.8945575-CDS-P-wetherbeei_contig17165:225..10621683186109.8945575-CDS-P-wetherbeei_contig17165:225..1062Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17165 226..1062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17165.1.1prot_P-wetherbeei_contig17165.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17165 226..1062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17165.1.1

>prot_P-wetherbeei_contig17165.1.1 ID=prot_P-wetherbeei_contig17165.1.1|Name=mRNA_P-wetherbeei_contig17165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=279bp
YLGLRVDATGKIVEATADSPAEKAGLQPGDFIVAVNRTSVVGLSRSQRVS
LLRGELGESVSLQYRRAGALQTVTMIRAALGSLKTAPVKTPATDPLDAQI
VSVYARSPHTDGCYALVMEGMGYLPAAVKRHLIRSGVTLVLTPTLQQLTG
QVGASRYDTKRKRAIVCERSDGHESDAENDPRLSITTLHELGHAYDWSLG
RFALTAAFLGAYDKEAPAVPEQDRQILAHFLQPGQHGPSECFASLFVAKY
YRPHDRRIDTLKRCFPNTFEIVKAIPDT*
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mRNA from alignment at P-wetherbeei_contig17165:226..1062-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17165.1.1 ID=mRNA_P-wetherbeei_contig17165.1.1|Name=mRNA_P-wetherbeei_contig17165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig17165:226..1062- (Phaeothamnion wetherbeei SAG_119_79)
TATCTAGGCTTGCGCGTGGACGCTACGGGCAAGATTGTGGAGGCTACGGC AGATTCACCGGCCGAGAAGGCGGGATTACAGCCTGGAGATTTCATCGTCG CGGTCAATCGGACTTCGGTCGTTGGGCTGTCTCGCAGTCAGCGCGTGTCT CTGCTGCGGGGCGAATTGGGAGAGAGCGTCAGTCTGCAGTATCGGCGCGC CGGCGCTTTGCAGACGGTTACGATGATTCGCGCGGCTTTGGGCAGCTTAA AGACCGCCCCCGTGAAGACGCCTGCCACAGACCCTCTCGATGCCCAGATC GTCTCTGTCTATGCGCGCAGTCCCCATACCGATGGCTGCTACGCCCTGGT GATGGAGGGCATGGGTTATCTTCCTGCAGCGGTAAAACGCCACCTCATCC GTTCGGGGGTAACCCTGGTGCTTACCCCAACCCTGCAGCAGTTGACCGGG CAGGTCGGCGCTTCTCGTTACGACACCAAGCGCAAACGTGCGATTGTTTG TGAGCGCTCCGACGGTCACGAGAGCGACGCTGAGAACGATCCGCGCCTCT CCATAACCACTCTCCACGAACTCGGTCACGCGTATGACTGGTCACTCGGA CGCTTCGCCTTGACGGCCGCCTTCCTCGGTGCTTATGACAAAGAGGCTCC CGCCGTTCCCGAACAGGATCGGCAGATTCTCGCGCATTTTCTCCAGCCCG GGCAGCACGGGCCCAGCGAGTGCTTTGCCTCGCTCTTCGTTGCCAAATAT TATCGGCCGCACGATCGGCGCATCGACACCCTCAAACGCTGCTTCCCCAA TACTTTCGAAATCGTCAAAGCGATTCCAGACACCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17165:226..1062-

>mRNA_P-wetherbeei_contig17165.1.1 ID=mRNA_P-wetherbeei_contig17165.1.1|Name=mRNA_P-wetherbeei_contig17165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig17165:226..1062- (Phaeothamnion wetherbeei SAG_119_79)
TATCTAGGCTTGCGCGTGGACGCTACGGGCAAGATTGTGGAGGCTACGGC
AGATTCACCGGCCGAGAAGGCGGGATTACAGCCTGGAGATTTCATCGTCG
CGGTCAATCGGACTTCGGTCGTTGGGCTGTCTCGCAGTCAGCGCGTGTCT
CTGCTGCGGGGCGAATTGGGAGAGAGCGTCAGTCTGCAGTATCGGCGCGC
CGGCGCTTTGCAGACGGTTACGATGATTCGCGCGGCTTTGGGCAGCTTAA
AGACCGCCCCCGTGAAGACGCCTGCCACAGACCCTCTCGATGCCCAGATC
GTCTCTGTCTATGCGCGCAGTCCCCATACCGATGGCTGCTACGCCCTGGT
GATGGAGGGCATGGGTTATCTTCCTGCAGCGGTAAAACGCCACCTCATCC
GTTCGGGGGTAACCCTGGTGCTTACCCCAACCCTGCAGCAGTTGACCGGG
CAGGTCGGCGCTTCTCGTTACGACACCAAGCGCAAACGTGCGATTGTTTG
TGAGCGCTCCGACGGTCACGAGAGCGACGCTGAGAACGATCCGCGCCTCT
CCATAACCACTCTCCACGAACTCGGTCACGCGTATGACTGGTCACTCGGA
CGCTTCGCCTTGACGGCCGCCTTCCTCGGTGCTTATGACAAAGAGGCTCC
CGCCGTTCCCGAACAGGATCGGCAGATTCTCGCGCATTTTCTCCAGCCCG
GGCAGCACGGGCCCAGCGAGTGCTTTGCCTCGCTCTTCGTTGCCAAATAT
TATCGGCCGCACGATCGGCGCATCGACACCCTCAAACGCTGCTTCCCCAA
TACTTTCGAAATCGTCAAAGCGATTCCAGACACCTAA
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