mRNA_P-wetherbeei_contig17157.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17157.1.1
Unique NamemRNA_P-wetherbeei_contig17157.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17157.1.1 vs. uniprot
Match: D8LTA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.930e-18
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 AAVAAAACRNLPTFAEFKGRMLSKTPQHAQQS---NVPIGGQYESIFKTLMNKIKSLEIDQSLLAMYMDSVHSCYQGAL 228
            A ++AAAC +  +F+EF+  +L++T Q AQQS    V IGGQYESIFKTLMNKIK+LEI+QSL  +Y+D VH CYQ  +
Sbjct:  529 AVLSAAACLDTLSFSEFREEVLART-QQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQDVI 606
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BLAST of mRNA_P-wetherbeei_contig17157.1.1 vs. uniprot
Match: A0A6H5JRG7_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 7.550e-18
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 AAVAAAACRNLPTFAEFKGRMLSKTPQHAQQS---NVPIGGQYESIFKTLMNKIKSLEIDQSLLAMYMDSVHSCYQGAL 228
            A ++ AAC +  +F+EF+  +L++T Q AQQS    V IGGQYESIFKTLMNKIK+LEI+QSL  +Y+D VH CYQ  +
Sbjct:  981 AVLSTAACLDTLSFSEFREEVLART-QQAQQSAGGGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVI 1058
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BLAST of mRNA_P-wetherbeei_contig17157.1.1 vs. uniprot
Match: A0A8J2WR33_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WR33_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.310e-6
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   40 FAEFKGRMLSKTPQHAQQSNVPIGGQYESIFKTLMNKIKSLEIDQSLLAMYMDSVHSCYQGAL 228
            F  FK +ML+K+      + V  G Q+ES+FKTLM+KI++ EI  S+  +Y+  + +CY   L
Sbjct:  451 FKRFKTQMLAKSKGQNATAAVGTGTQFESVFKTLMDKIRAFEISHSIYELYLGHLQACYAFTL 513
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BLAST of mRNA_P-wetherbeei_contig17157.1.1 vs. uniprot
Match: A0A7S3NMX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMX8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.500e-6
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   25 RNLPTFAEFKGRMLSKTPQHAQQSNV---PIGGQYESIFKTLMNKIKSLEIDQSLLAMYMDSVHSCYQGAL 228
            RNL  +  FK RML K+ Q A    V   P+ G Y+SIFKTLM+KIK+ EI+ S+   Y+  +H+C+  ++
Sbjct:  576 RNLD-YKLFKERMLLKSTQQAAPREVTTPPVPG-YDSIFKTLMDKIKAFEINHSIAERYLVHLHACFVSSV 644
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BLAST of mRNA_P-wetherbeei_contig17157.1.1 vs. uniprot
Match: A0A7S2C5W7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5W7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.190e-6
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   94 SNVPIGGQYESIFKTLMNKIKSLEIDQSLLAMYMDSVHSCY 216
            S+VP G   +  FKTLMNKIK+LEI+Q++L +Y+  +H CY
Sbjct:    6 SSVPAGRDDKDFFKTLMNKIKTLEINQTILDLYISKLHECY 46
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17157.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTA7_ECTSI2.930e-1858.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRG7_9PHAE7.550e-1856.96SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J2WR33_9STRA1.310e-639.68Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3NMX8_9STRA2.500e-643.66Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2C5W7_9STRA5.190e-653.66Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17157contigP-wetherbeei_contig17157:1167..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.654464-CDS-P-wetherbeei_contig17157:1166..13941683186109.654464-CDS-P-wetherbeei_contig17157:1166..1394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17157 1167..1394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17157.1.1prot_P-wetherbeei_contig17157.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17157 1167..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17157.1.1

>prot_P-wetherbeei_contig17157.1.1 ID=prot_P-wetherbeei_contig17157.1.1|Name=mRNA_P-wetherbeei_contig17157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
AAVAAAACRNLPTFAEFKGRMLSKTPQHAQQSNVPIGGQYESIFKTLMNK
IKSLEIDQSLLAMYMDSVHSCYQGAL
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mRNA from alignment at P-wetherbeei_contig17157:1167..1394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17157.1.1 ID=mRNA_P-wetherbeei_contig17157.1.1|Name=mRNA_P-wetherbeei_contig17157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig17157:1167..1394+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCTGTGGCGGCGGCGGCATGCCGCAACCTGCCGACCTTTGCCGAGTT
CAAAGGGCGCATGCTCTCTAAGACGCCGCAGCACGCGCAGCAGTCCAACG
TGCCGATCGGCGGCCAGTACGAGAGCATCTTCAAGACGCTCATGAACAAG
ATCAAGTCGCTTGAGATTGACCAGAGTCTGCTAGCGATGTACATGGACAG
CGTCCACAGCTGCTACCAGGGCGCACTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17157:1167..1394+

>mRNA_P-wetherbeei_contig17157.1.1 ID=mRNA_P-wetherbeei_contig17157.1.1|Name=mRNA_P-wetherbeei_contig17157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig17157:1167..1394+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCTGTGGCGGCGGCGGCATGCCGCAACCTGCCGACCTTTGCCGAGTT
CAAAGGGCGCATGCTCTCTAAGACGCCGCAGCACGCGCAGCAGTCCAACG
TGCCGATCGGCGGCCAGTACGAGAGCATCTTCAAGACGCTCATGAACAAG
ATCAAGTCGCTTGAGATTGACCAGAGTCTGCTAGCGATGTACATGGACAG
CGTCCACAGCTGCTACCAGGGCGCACTC
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