mRNA_P-wetherbeei_contig17145.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17145.1.1
Unique NamemRNA_P-wetherbeei_contig17145.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17145.1.1 vs. uniprot
Match: W7U902_9STRA (Rho gtpase-activating protein 25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U902_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.100e-7
Identity = 43/147 (29.25%), Postives = 62/147 (42.18%), Query Frame = 1 
Query:    1 GLRRQVTLGDWGQSAIPHDVPPASRPGARARWRAWLSYKGTTKADAMQMFVREVAILEDAAXXXXXXXXXXXXXXAIAGVVDXXXXXXXXXXXXXXXGILWKQRDFVKGWRPRHFVLEDAKEGRLVYRINEADATERGCLSLAGARL 441
            G+  Q T GD  +++ P     AS+   R +W AW    G T+  AM  ++ ++ ++E+                A     D               G+L+KQRD  KGWRPR FVL+      L Y +   D T R  L L G R+
Sbjct:   43 GILMQATAGDC-RASKPPPSSNASQGDERLKWMAWKKKHGMTREQAMVAYIDQMDLIEEELATGGAVLMDSSGGNAALYSSDGLSSSQETLVRT---GVLYKQRDIFKGWRPRFFVLQGKV---LKYYLQADDPTARSTLILDGCRV 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17145.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W7U902_9STRA1.100e-729.25Rho gtpase-activating protein 25 n=2 Tax=Monodopsi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17145contigP-wetherbeei_contig17145:21..680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog9541.XP_005582472.1
Preferred nameDbil5
PFAMsACBP
Model size441
Max annot lvl33208|Metazoa
KEGG koko:K08762,ko:K20299
KEGG Pathwayko03320,map03320
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0019637,GO:0019693,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048609,GO:0051186,GO:0051704,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Exons2
Evalue4.64e-05
EggNOG OGsCOG4281@1|root,KOG0817@2759|Eukaryota,3A6QF@33154|Opisthokonta,3BSR2@33208|Metazoa,3D9PP@33213|Bilateria,48G8F@7711|Chordata,49CRB@7742|Vertebrata,3JHMR@40674|Mammalia,35QVY@314146|Euarchontoglires,4MK2P@9443|Primates,36BZ4@314294|Cercopithecoidea
DescriptionAcyl CoA binding protein
Cds size441
COG categoryI
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.4467812-CDS-P-wetherbeei_contig17145:20..3111683186109.4467812-CDS-P-wetherbeei_contig17145:20..311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17145 21..311 +
1683186109.457447-CDS-P-wetherbeei_contig17145:530..6801683186109.457447-CDS-P-wetherbeei_contig17145:530..680Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17145 531..680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17145.1.1prot_P-wetherbeei_contig17145.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17145 21..680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17145.1.1

>prot_P-wetherbeei_contig17145.1.1 ID=prot_P-wetherbeei_contig17145.1.1|Name=mRNA_P-wetherbeei_contig17145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
GLRRQVTLGDWGQSAIPHDVPPASRPGARARWRAWLSYKGTTKADAMQMF
VREVAILEDAAAAAASSSSSGSGGGAIAGVVDGGAIAGVVDGGMIAGGIL
WKQRDFVKGWRPRHFVLEDAKEGRLVYRINEADATERGCLSLAGARL
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mRNA from alignment at P-wetherbeei_contig17145:21..680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17145.1.1 ID=mRNA_P-wetherbeei_contig17145.1.1|Name=mRNA_P-wetherbeei_contig17145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig17145:21..680+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCCGGCGGCAGGTCACCTTGGGCGATTGGGGCCAAAGCGCTATCCC
GCACGACGTGCCGCCGGCCTCGCGGCCCGGCGCCCGCGCCCGCTGGCGCG
CCTGGCTCTCGTACAAAGGTACCACCAAGGCCGACGCCATGCAAATGTTT
GTGCGGGAAGTCGCCATATTGGAGGACGCCGCCGCCGCCGCTGCCTCTTC
CTCCTCCAGCGGCAGCGGCGGCGGCGCGATCGCCGGCGTCGTCGACGGCG
GCGCGATCGCCGGCGTCGTCGACGGCGGCATGATCGCCGGCGTCGTTGAC
GGCGGCATTGGCGGCGGTGTTGTGGGTGGCGGGGGGAACACGGCAGCGGC
GGCAACAACAGACGCTGCAGCGGCGGTGGATGGGCGGCCCAACTTGGCAA
GTTTTGATGGTTCCGGCGCTGGCGCTGGTGACGGCGGCGGCGGTGGCGGC
GGCGACGATGGGGTCCGACTTCGGCCTGACTCTGCGACCTTCTCGAGGAG
AGGGATGGAGGGGATCCTCTGGAAGCAGCGCGACTTTGTGAAGGGTTGGC
GGCCGCGACATTTCGTCTTGGAGGACGCCAAAGAGGGTCGCCTCGTGTAC
CGAATCAACGAGGCGGACGCGACGGAGCGGGGATGCCTGTCCCTAGCCGG
TGCGCGACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17145:21..680+

>mRNA_P-wetherbeei_contig17145.1.1 ID=mRNA_P-wetherbeei_contig17145.1.1|Name=mRNA_P-wetherbeei_contig17145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig17145:21..680+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCCGGCGGCAGGTCACCTTGGGCGATTGGGGCCAAAGCGCTATCCC
GCACGACGTGCCGCCGGCCTCGCGGCCCGGCGCCCGCGCCCGCTGGCGCG
CCTGGCTCTCGTACAAAGGTACCACCAAGGCCGACGCCATGCAAATGTTT
GTGCGGGAAGTCGCCATATTGGAGGACGCCGCCGCCGCCGCTGCCTCTTC
CTCCTCCAGCGGCAGCGGCGGCGGCGCGATCGCCGGCGTCGTCGACGGCG
GCGCGATCGCCGGCGTCGTCGACGGCGGCATGATCGCCGGCGGGATCCTC
TGGAAGCAGCGCGACTTTGTGAAGGGTTGGCGGCCGCGACATTTCGTCTT
GGAGGACGCCAAAGAGGGTCGCCTCGTGTACCGAATCAACGAGGCGGACG
CGACGGAGCGGGGATGCCTGTCCCTAGCCGGTGCGCGACTG
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