mRNA_P-wetherbeei_contig17144.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17144.1.1
Unique NamemRNA_P-wetherbeei_contig17144.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17144.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17144contigP-wetherbeei_contig17144:605..1135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.3932042-UTR-P-wetherbeei_contig17144:604..6221683186109.3932042-UTR-P-wetherbeei_contig17144:604..622Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17144 605..622 -
1683186109.4191787-UTR-P-wetherbeei_contig17144:1018..11351683186109.4191787-UTR-P-wetherbeei_contig17144:1018..1135Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17144 1019..1135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.4020574-CDS-P-wetherbeei_contig17144:622..7971683186109.4020574-CDS-P-wetherbeei_contig17144:622..797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17144 623..797 -
1683186109.4105456-CDS-P-wetherbeei_contig17144:1016..10181683186109.4105456-CDS-P-wetherbeei_contig17144:1016..1018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17144 1017..1018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17144.1.1prot_P-wetherbeei_contig17144.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17144 623..1018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17144.1.1

>prot_P-wetherbeei_contig17144.1.1 ID=prot_P-wetherbeei_contig17144.1.1|Name=mRNA_P-wetherbeei_contig17144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
MRLFDRSFRFSIGAVRAVYHDELAALLDPGRVLRGRWLNRHSARYFYHRH
TLCRPLCR*
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mRNA from alignment at P-wetherbeei_contig17144:605..1135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17144.1.1 ID=mRNA_P-wetherbeei_contig17144.1.1|Name=mRNA_P-wetherbeei_contig17144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig17144:605..1135- (Phaeothamnion wetherbeei SAG_119_79)
TTTGCGCGAGACGTTACAGCAGGCAGACCCGGTACACTAACGGTAGCCTG
CCTTGAAATAAACACTTTTTCGATTCACAACTTGGCAACAGAGCGTCTAA
GGCGAGATTTTGAAAACATGTAAGGGCGTATAAGTTTCGTAAAGCCCATC
GTCGCACGGTCATGTGCATCTTTTAAGCCTAGAGATACGTTATAACATCC
ATTTGCCGAAGATTGAGCGTGTCCTCCTTCCCCTCGTTGACATGAAATAC
CTGCGAAAGCGACGGCGCTTTCTTAAAATGTCCAGATTTGCTCGTTGACG
GCCCTGAAACGATGCCATTCGTCGTATCCTTTCTGCAGGCGCCTTTTTGA
CAGGTCCTTCCGTTTCTCAATAGGCGCAGTGCGCGCAGTCTATCATGACG
AGCTCGCTGCCTTGCTCGACCCTGGTCGAGTCCTTCGTGGCCGATGGCTG
AACCGGCATTCCGCTCGCTACTTTTATCACCGTCACACTCTTTGTCGGCC
ACTATGCCGCTGAGCACTTCCACGGCGTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17144:605..1135-

>mRNA_P-wetherbeei_contig17144.1.1 ID=mRNA_P-wetherbeei_contig17144.1.1|Name=mRNA_P-wetherbeei_contig17144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig17144:605..1135- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCTTTTTGACAGGTCCTTCCGTTTCTCAATAGGCGCAGTGCGCGC
AGTCTATCATGACGAGCTCGCTGCCTTGCTCGACCCTGGTCGAGTCCTTC
GTGGCCGATGGCTGAACCGGCATTCCGCTCGCTACTTTTATCACCGTCAC
ACTCTTTGTCGGCCACTATGCCGCTGA
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