mRNA_P-wetherbeei_contig17136.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17136.1.1
Unique NamemRNA_P-wetherbeei_contig17136.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A485KIJ7_9STRA (Aste57867_7572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIJ7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.960e-19
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  272 DCAVVSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAM 532
            DC  V  YMPP  P+   ++ A L  C KTWK IVT     M+  +G+SGIVLFYDEF+FRLFQR   F+ +FP++ KR EVL KAM
Sbjct:   29 DC--VQHYMPPNLPIRPILNAAYLADCSKTWKLIVTANTDRMRQ-YGKSGIVLFYDEFFFRLFQRDFTFEDVFPDIAKRSEVLVKAM 112          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A067CC73_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CC73_SAPPC)

HSP 1 Score: 89.7 bits (221), Expect = 1.090e-18
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  272 DCAVVSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAM 532
            DC  V  YMPP FP+   ++ A L  C K+WK IVT     M+  +G+SGIVLFYDEF+FRLFQR    + +FP++ KRGEVL KAM
Sbjct:   29 DC--VQHYMPPNFPMRPILNTAYLLDCSKSWKLIVTANTDRMRQ-YGKSGIVLFYDEFFFRLFQRDFTLEEVFPDIGKRGEVLVKAM 112          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A1V9Z1D9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1D9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.000e-18
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  272 DCAVVSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAM 532
            DC  V  YMPP FP+   ++ A +  C KTWK IVT     M+  +G+SGIVLFYDEF+FRLFQR    + +FP++ KR EVL KAM
Sbjct:   29 DC--VQHYMPPNFPMRPILNSAYVMDCSKTWKLIVTANTDRMRQ-YGKSGIVLFYDEFFFRLFQRDFTLEEVFPDIAKRSEVLVKAM 112          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A1V9YCB8_9STRA (GLOBIN domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCB8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.760e-18
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  272 DCAVVSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAM 532
            DC  V  YMPP  P+   ++ A L  C K+WK IVT     M+  +G+SGIVLFYDEF+FRLFQR    + +FP++ KRGEVL KAM
Sbjct:   29 DC--VQHYMPPNLPMRPILNAAYLMDCSKSWKLIVTANTDRMRQ-YGKSGIVLFYDEFFFRLFQRDFTLEEVFPDIGKRGEVLVKAM 112          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A485K2D1_9STRA (Aste57867_259 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2D1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 7.650e-18
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  284 VSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAMV 535
            V  YMPP FPL   ++ A++D+C KTW  I       M+S +G+ GIVLFYDEF++RLFQR   F+++F N ++RGEVL KA++
Sbjct:   41 VQHYMPPQFPLLPVVTKARMDLCVKTWDMIRHATTDKMKS-YGKPGIVLFYDEFFYRLFQRDTTFQVVFSNSRERGEVLIKALM 123          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: W4FN58_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FN58_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.020e-17
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  284 VSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAMV 535
            V  YMPP  PL   ++ A++DIC +TW  I T   + M+S +G+ GIVLFYDEF++RLFQR + F+ +F N ++R EVL KA++
Sbjct:   45 VQHYMPPQLPLLPMLTKARIDICTRTWDKIRTAGTEKMKS-YGKPGIVLFYDEFFYRLFQRDSTFRTVFANAKERAEVLIKALM 127          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A024UL09_9STRA (GLOBIN domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UL09_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-16
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  272 DCAVVSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAM 532
            DC  V  Y+PP  P+   ++ A L  C KTWK IVT     M+  +G+SGIVLFYDEF+FRLFQR    + +FP++ KR EV+ KA+
Sbjct:   29 DC--VQHYLPPNLPIRPILNEAYLTDCTKTWKLIVTANTDRMRQ-YGKSGIVLFYDEFFFRLFQRDFTLEDVFPDIAKRSEVIIKAI 112          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A485LKK0_9STRA (Aste57867_22517 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKK0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.120e-15
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  284 VSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAM 532
            V  YMPP FPL   ++ ++L IC++TW+ + +     M+  +G+ GIVLFYDEF++RLF+R   F ++F N+++RGEVL KA+
Sbjct:   96 VQHYMPPQFPLIPVLTKSRLQICQRTWELVQSAGTDKMKQ-YGKPGIVLFYDEFFYRLFERDMTFSLVFINVKQRGEVLIKAL 177          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A024TW08_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW08_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.440e-15
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  284 VSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAMV 535
            V  YMPP  PL   ++ A+++ C ++W  + T     M+S +G+ GIVLFYDEF++RLFQR + F+++F N ++R EVL KA++
Sbjct:   46 VQHYMPPQLPLLPVLTKARIETCARSWDKVRTAATDKMKS-YGKPGIVLFYDEFFYRLFQRDSTFRVVFANSKERAEVLIKALM 128          
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Match: A0A1V9ZGT6_9STRA (GLOBIN domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGT6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.680e-15
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  284 VSWYMPPTFPLEINISPAQLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKIIFPNMQKRGEVLTKAM 532
            V  Y+PP FP+   ++P  +DICR+TW  I T     M+  +G+ GI+LFYDEF++R+F+R    + +FP +Q+R EVL KA+
Sbjct:   40 VQHYLPPQFPIIPVLTPTNVDICRRTWDLIQTAGTDKMRQ-YGKPGIILFYDEFFYRIFERDTTIREVFPKVQQRAEVLIKAI 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A485KIJ7_9STRA6.960e-1954.02Aste57867_7572 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067CC73_SAPPC1.090e-1854.02Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A1V9Z1D9_9STRA3.000e-1852.87Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9YCB8_9STRA5.760e-1852.87GLOBIN domain-containing protein n=1 Tax=Achlya hy... [more]
A0A485K2D1_9STRA7.650e-1850.00Aste57867_259 protein n=1 Tax=Aphanomyces stellatu... [more]
W4FN58_9STRA5.020e-1748.81Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024UL09_9STRA1.120e-1649.43GLOBIN domain-containing protein n=4 Tax=Aphanomyc... [more]
A0A485LKK0_9STRA2.120e-1545.78Aste57867_22517 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TW08_9STRA2.440e-1544.05Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9ZGT6_9STRA2.680e-1544.58GLOBIN domain-containing protein n=1 Tax=Achlya hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17136contigP-wetherbeei_contig17136:99..1169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size547
Hectar predicted targeting categoryother localisation
Exons4
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.1078596-CDS-P-wetherbeei_contig17136:98..1731683186109.1078596-CDS-P-wetherbeei_contig17136:98..173Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17136 99..173 -
1683186109.1154265-CDS-P-wetherbeei_contig17136:497..5401683186109.1154265-CDS-P-wetherbeei_contig17136:497..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17136 498..540 -
1683186109.1227593-CDS-P-wetherbeei_contig17136:628..6651683186109.1227593-CDS-P-wetherbeei_contig17136:628..665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17136 629..665 -
1683186109.1300054-CDS-P-wetherbeei_contig17136:777..9821683186109.1300054-CDS-P-wetherbeei_contig17136:777..982Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17136 778..982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.1372788-UTR-P-wetherbeei_contig17136:982..11691683186109.1372788-UTR-P-wetherbeei_contig17136:982..1169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17136 983..1169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17136.1.1prot_P-wetherbeei_contig17136.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17136 99..982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17136.1.1

>prot_P-wetherbeei_contig17136.1.1 ID=prot_P-wetherbeei_contig17136.1.1|Name=mRNA_P-wetherbeei_contig17136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MGATVSTTNIKRGISLAERNLREIPRERDCAVVSWYMPPTFPLEINISPA
QLDICRKTWKSIVTGRAQGMQSLHGRSGIVLFYDEFYFRLFQRAAVFKII
FPNMQKRGEVLTKAMVSET*
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mRNA from alignment at P-wetherbeei_contig17136:99..1169-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17136.1.1 ID=mRNA_P-wetherbeei_contig17136.1.1|Name=mRNA_P-wetherbeei_contig17136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-wetherbeei_contig17136:99..1169- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGGACGCCCTTCAAAACAGAAAGCATTGGAATTGACCGCATTCACAA GCAAGCGATAGAATCGATAGAGACATTCCTCTCTGATAGCAGCGCTTTTC AAGACAAGAGACCTCCGACGCATCCGACGCCTCCGACGCCGTCCGCCTGG ACGTCACAGAGGCCTTGAGAAGAGCGCAGCAGCAATAATGGGGGCCACGG TCAGCACAACGAACATCAAGCGCGGCATCTCGCTAGCCGAGCGAAATCTG CGCGAGATTCCGCGGGAGCGAGACTGCGCCGTCGTGAGCTGGTATATGCC GCCAACATTTCCTTTGGAGATCAACATATCGCCGGCGCAGCTTGACATCT GCCGGAAGACGTGGAAGTCCATCGTCACCGGTCGGGCTCAAGGTACGGCT GACAGAGGAGGACGAATTGCAATCACTATGAGATCGTCAAATTGTATGCT CGGTCATTCACTCCTTCTTTCTGTCTGCCCCTGCCCTCTCTTCATTCAAA ACAGGCATGCAGAGCTTGCACGGCCGAAGCGGCATCGTCCTGTGAGTTGT ATCCTCCCCGCCTAGCGTCCGTCGCATTCCGGACGGGGGTAAATTACCGA GAATGTTTTGCTTTTCTGCCGCCCTGCAGGTTCTACGACGAGTTCTACTT CAGGCTCTTTCAACGGGCAGCGGTAAGGAAGCGACAGGCCTGCTGCATAA AAGACGGAGGCGGCTTTTCTCCTCAATCTCTTTCCCATTGAACGAAAGCG GCGTCGAGTGAGGAAGTCTTTTTGCTCGAGCAAGCTTTACCTGCGACTGC CGCGCTCTTCGTGCCTGTCGATACCGCACCTTTCACCGCCACCAGCCAGT TGCGCTGCCGCCAGGCGAGTCTGCCTTTCCGCGCTGTCAATAAAACAGTC GGCTTCACCGCTTCACTGCCTTGTCTCGATCGTGCCGCCTACCTTGAATT GCTCTTCGACTGTTCCACTGCGGCTGGGCGCTGCGCCTGCATACAGGTGT TCAAAATCATCTTCCCCAACATGCAGAAGCGCGGCGAGGTGCTCACCAAG GCCATGGTGAGTGAGACTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17136:99..1169-

>mRNA_P-wetherbeei_contig17136.1.1 ID=mRNA_P-wetherbeei_contig17136.1.1|Name=mRNA_P-wetherbeei_contig17136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig17136:99..1169- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGCCACGGTCAGCACAACGAACATCAAGCGCGGCATCTCGCTAGC
CGAGCGAAATCTGCGCGAGATTCCGCGGGAGCGAGACTGCGCCGTCGTGA
GCTGGTATATGCCGCCAACATTTCCTTTGGAGATCAACATATCGCCGGCG
CAGCTTGACATCTGCCGGAAGACGTGGAAGTCCATCGTCACCGGTCGGGC
TCAAGGCATGCAGAGCTTGCACGGCCGAAGCGGCATCGTCCTGTTCTACG
ACGAGTTCTACTTCAGGCTCTTTCAACGGGCAGCGGTGTTCAAAATCATC
TTCCCCAACATGCAGAAGCGCGGCGAGGTGCTCACCAAGGCCATGGTGAG
TGAGACTTGA
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