mRNA_P-wetherbeei_contig1713.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1713.4.1
Unique NamemRNA_P-wetherbeei_contig1713.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A3C0TXF5_9PROT (Disulfide bond formation protein DsbA n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXF5_9PROT)

HSP 1 Score: 269 bits (687), Expect = 5.510e-89
Identity = 136/198 (68.69%), Postives = 161/198 (81.31%), Query Frame = 1
Query:   19 LAIGVLGGFSSVSAEEPAATPAAS-GVFTGEIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLLP 609
            L  GV+    +V+A+E A   A + GV+TGEIVLG+A+APVTIIE++SMTCPHCA+FH  VLPALKEKYID GKVKL  REFPLDG+ALRASMLARC GE+K    I I F+QQ +WA SE+P+  LAR+ RLGGM+Q  FDAC+A+E+LMKQLVQSRQDG +KYDIK TPSFIIDGKTH G   IE+FDKIL+PLLP
Sbjct:    7 LVTGVMMAPLAVAADEAAKPDAENTGVYTGEIVLGEADAPVTIIEFSSMTCPHCADFHINVLPALKEKYIDAGKVKLIMREFPLDGLALRASMLARCSGESKVKGFISIFFEQQNIWAASENPIEELARITRLGGMNQQRFDACLANESLMKQLVQSRQDGQDKYDIKATPSFIIDGKTHSGLSTIEEFDKILKPLLP 204          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A351T5I9_9PROT (Disulfide bond formation protein DsbA n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T5I9_9PROT)

HSP 1 Score: 233 bits (593), Expect = 2.600e-74
Identity = 106/170 (62.35%), Postives = 138/170 (81.18%), Query Frame = 1
Query:   97 FTGEIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLL 606
            + G+IV G A+AP+T+IEYASMTCPHCANFHT + P L+ KY++TGKV+  FREFPLDG+ALRA+MLARCGG  + H  +D+LF QQ  WAT++DP+AAL+R+ARLGGMS+AAF +CMA+E L + +V SR  GSE++DI  TPSF+I GKT+ G + +E+FDKIL P L
Sbjct:   61 YAGDIVEGAADAPITVIEYASMTCPHCANFHTSIYPELRAKYVETGKVRFVFREFPLDGLALRAAMLARCGGAERVHGYLDVLFMQQGKWATAQDPIAALSRIARLGGMSEAAFQSCMANEPLAEMVVASRVKGSEEFDITSTPSFVIGGKTYSGGLGVEEFDKILAPYL 230          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A3D3UDQ4_9PROT (Disulfide bond formation protein DsbA (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UDQ4_9PROT)

HSP 1 Score: 218 bits (556), Expect = 9.870e-70
Identity = 99/157 (63.06%), Postives = 127/157 (80.89%), Query Frame = 1
Query:  136 VTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLL 606
            +T+IEYASMTCPHCANFHT + P L+ KY++TGKV+  FREFPLDG+ALRA+MLARCGG  + H  +D+LF QQ  WAT++DP+AAL+R+ARLGGMS+AAF  CMA+E L + +V SR  GSE++DI  TPSF+I GKT+ G + +E+FDKIL P L
Sbjct:    1 ITVIEYASMTCPHCANFHTSIYPELRAKYVETGKVRFVFREFPLDGLALRAAMLARCGGAERVHGYLDVLFMQQGKWATAQDPIAALSRIARLGGMSEAAFQGCMANEPLAEMVVASRVKGSEEFDITSTPSFVIGGKTYSGGLGVEEFDKILAPYL 157          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A2E5KRQ3_9PROT (Disulfide bond formation protein DsbA n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E5KRQ3_9PROT)

HSP 1 Score: 198 bits (503), Expect = 7.140e-61
Identity = 91/168 (54.17%), Postives = 127/168 (75.60%), Query Frame = 1
Query:  106 EIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLLP 609
            E+ LG+ +APVTIIEYASM+CPHCA FH + LP LKEKYIDTGKV+L FREFPL+  A  A+++ARC GE +    +D+ FK+Q  W ++EDP  AL ++ARLGG+S +A  AC  D+AL   ++Q+R +G +++D+  TPSF+IDGKT+ G + +E+ +KI+ PLLP
Sbjct:   51 EMALGRDDAPVTIIEYASMSCPHCAKFHEQTLPMLKEKYIDTGKVRLVFREFPLERTAYWATIMARCAGEKRYFAFVDVFFKKQQNWYSAEDPFQALLKIARLGGLSASAVKACSEDQALGDGILQTRLEGEQQHDVTSTPSFVIDGKTYRGALTLEEIEKIIIPLLP 218          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: UPI001A972385 (DsbA family protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A972385)

HSP 1 Score: 190 bits (482), Expect = 7.670e-58
Identity = 97/191 (50.79%), Postives = 128/191 (67.02%), Query Frame = 1
Query:   46 SSVSAEEPAAT---PAASGVFTGEIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFII-DGKTHDGDMEIEDFDKILQPLL 606
            +S     PA T   PA       E VLGKA+APVTII+Y+SMTCPHCA FHT VLP +KEKYIDTGKVKL FR+FPLD VAL AS +ARC  E +  PL+D+LFK Q+ WA + DP  AL++  +L GM QA  DAC+AD+ L   +++ R  G++++ ++ TP+F++ DG   +G   IE F   +  LL
Sbjct:   17 ASAQTAAPAQTAQAPAVPAHALSERVLGKADAPVTIIDYSSMTCPHCATFHTDVLPKIKEKYIDTGKVKLVFRDFPLDRVALAASAMARCAPEERYFPLLDVLFKSQSQWARASDPTKALSQYGKLAGMQQATIDACIADQTLADGILKFRMQGTDEHKVQSTPTFVLNDGTKIEGAQSIETFSAAIDKLL 207          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A3D5NCT3_9PROT (DsbA family protein n=7 Tax=Thalassospira TaxID=168934 RepID=A0A3D5NCT3_9PROT)

HSP 1 Score: 188 bits (478), Expect = 2.330e-57
Identity = 90/167 (53.89%), Postives = 121/167 (72.46%), Query Frame = 1
Query:  106 EIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLL 606
            E VLG A+APVTIIEYAS+TCPHCA FH +VLP +KEK IDTGK K+ FR++PLDG+ALRA+ +A+C G+ +   ++ +LFK Q  WA SEDP+  + +V R GGM+  A DAC+ADEA++  +V SR  G ++Y +  TPSFIIDG+T  G  E E F   ++ L+
Sbjct:   31 EHVLGDADAPVTIIEYASLTCPHCAAFHNEVLPEIKEKLIDTGKAKMIFRDYPLDGIALRAAAVAQCAGDDRYFGVLSMLFKSQMTWARSEDPIEGIKQVVRFGGMNGDAVDACLADEAMIDAIVASRMRGEQEYSVSSTPSFIIDGETIAGAREAEFFIDKVEDLI 197          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: UPI00192C0A6D (DsbA family protein n=2 Tax=Azospirillaceae TaxID=2829815 RepID=UPI00192C0A6D)

HSP 1 Score: 188 bits (477), Expect = 4.120e-57
Identity = 88/180 (48.89%), Postives = 127/180 (70.56%), Query Frame = 1
Query:   70 AATPAASGVFTGEIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLLP 609
            A TP      T    LG  +APV +IEYAS+TC HCA FH +VL  +K++ IDTGKV+L +R+FPLD +AL A++LARC    +  P++ +LF +Q  W+  +DP+ ALAR+  L G+S+ A+DAC AD+AL   +VQSR +G +K+ ++ TPSF+IDGKT+ G + I++F K ++PLLP
Sbjct:   24 AQTPTVPQTATAPRALGSPDAPVEVIEYASLTCHHCATFHNEVLAQVKKELIDTGKVRLVYRDFPLDRIALEAAILARCVAPERYFPVLSVLFSKQEDWSHGKDPVEALARIGALAGLSRPAYDACRADKALQDSIVQSRLEGEQKHGVESTPSFVIDGKTYKGVLPIDEFKKAVEPLLP 203          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A537KVY9_9PROT (DsbA family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537KVY9_9PROT)

HSP 1 Score: 187 bits (476), Expect = 7.270e-57
Identity = 90/167 (53.89%), Postives = 117/167 (70.06%), Query Frame = 1
Query:  106 EIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLL 606
            ++VLGKA+APVTIIEYASMTCPHCANFH    PALK KYIDTGKV+  FREFPLD +A  ASMLARC G  K+  LID+LF  Q  WA  E PLAAL ++ +  G +QA FD C+ D+ L   ++  R+  S+ Y ++ TP+  ++GK   G + IE+ +K++ PLL
Sbjct:   45 DLVLGKADAPVTIIEYASMTCPHCANFHKTTYPALKAKYIDTGKVRFIFREFPLDDLAAAASMLARCAGGEKSMALIDVLFASQDKWAVRE-PLAALLQIGKQAGFTQATFDECLKDQKLYNNILAMRERASKDYKVESTPTLFVNGKMQKGGISIEELEKVMAPLL 210          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A257HF48_9HYPH (Disulfide bond formation protein DsbA n=1 Tax=Rhizobiales bacterium PAR1 TaxID=2015577 RepID=A0A257HF48_9HYPH)

HSP 1 Score: 187 bits (474), Expect = 1.170e-56
Identity = 86/168 (51.19%), Postives = 120/168 (71.43%), Query Frame = 1
Query:  103 GEIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLL 606
            G+ VLGK +APVTI+EYAS+TC HCA FH +  P LKEKYIDTGKV+L FREFP D ++  ASM+ARC  EA+  PL+ + FKQQ  WA S+ PL A+  +AR  G +Q +F+AC+ D+ +   L + ++ G+E + +  TP+F I+G+   G+M IEDFDK+++P L
Sbjct:   36 GDKVLGKEDAPVTIVEYASLTCSHCAAFHDETFPKLKEKYIDTGKVRLIFREFPFDPLSTAASMIARCSTEARYFPLVSVFFKQQQGWAGSDKPLEAMLAIARQAGFTQESFEACLKDQKIYDGLNEQKKRGAEVHGVNATPTFFINGEKKSGNMPIEDFDKLIEPYL 203          
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Match: A0A2D6T2Q9_9PROT (Disulfide bond formation protein DsbA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T2Q9_9PROT)

HSP 1 Score: 187 bits (475), Expect = 1.400e-56
Identity = 94/196 (47.96%), Postives = 133/196 (67.86%), Query Frame = 1
Query:   19 LAIGVLGGFSSVSAEEPAATPAASGVFTGEIVLGKAEAPVTIIEYASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLARCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACMADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQPLL 606
            LA+G+  G ++ SAE    T         E+ +G A+APVTIIEYASM+CPHCA+FH + LP LK+KY+D+GKV+L FREFPLD  A  A++LARC GE +    +D+LF+QQ  W+ S DP+A L ++  +GG+ +  FDACM +  L   ++ +R  G +K+ I+ TPSF+I GKT  G   +E FD++L+PLL
Sbjct:   34 LALGLALGPATASAEPLKGTE--------EMAIGAADAPVTIIEYASMSCPHCAHFHIETLPELKKKYVDSGKVRLVFREFPLDRTAFWAAILARCSGEKRYFGFVDLLFRQQEKWSRSRDPIAELRKIGLMGGVGKKEFDACMNNSDLGNAILATRLAGEQKHKIESTPSFVIGGKTQPGAPTLEQFDELLKPLL 221          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1713.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXF5_9PROT5.510e-8968.69Disulfide bond formation protein DsbA n=1 Tax=Alph... [more]
A0A351T5I9_9PROT2.600e-7462.35Disulfide bond formation protein DsbA n=4 Tax=Alph... [more]
A0A3D3UDQ4_9PROT9.870e-7063.06Disulfide bond formation protein DsbA (Fragment) n... [more]
A0A2E5KRQ3_9PROT7.140e-6154.17Disulfide bond formation protein DsbA n=1 Tax=Alph... [more]
UPI001A9723857.670e-5850.79DsbA family protein n=1 Tax=Azospirillum sp. SYSU ... [more]
A0A3D5NCT3_9PROT2.330e-5753.89DsbA family protein n=7 Tax=Thalassospira TaxID=16... [more]
UPI00192C0A6D4.120e-5748.89DsbA family protein n=2 Tax=Azospirillaceae TaxID=... [more]
A0A537KVY9_9PROT7.270e-5753.89DsbA family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A257HF48_9HYPH1.170e-5651.19Disulfide bond formation protein DsbA n=1 Tax=Rhiz... [more]
A0A2D6T2Q9_9PROT1.400e-5647.96Disulfide bond formation protein DsbA n=1 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1713contigP-wetherbeei_contig1713:2161..2772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1089551.KE386572_gene1474
Preferred nameMA20_42440
PFAMsThioredoxin_4
Model size612
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.44e-56
EggNOG OGsCOG1651@1|root,COG1651@2|Bacteria,1RFF4@1224|Proteobacteria,2U5BN@28211|Alphaproteobacteria,4BQHQ@82117|unclassified Alphaproteobacteria
DescriptionThioredoxin
Cds size612
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.862152-CDS-P-wetherbeei_contig1713:2160..27721683186108.862152-CDS-P-wetherbeei_contig1713:2160..2772Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1713 2161..2772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1713.4.1prot_P-wetherbeei_contig1713.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1713 2161..2772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1713.4.1

>prot_P-wetherbeei_contig1713.4.1 ID=prot_P-wetherbeei_contig1713.4.1|Name=mRNA_P-wetherbeei_contig1713.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp
LVLAGWLAIGVLGGFSSVSAEEPAATPAASGVFTGEIVLGKAEAPVTIIE
YASMTCPHCANFHTKVLPALKEKYIDTGKVKLFFREFPLDGVALRASMLA
RCGGEAKAHPLIDILFKQQTVWATSEDPLAALARVARLGGMSQAAFDACM
ADEALMKQLVQSRQDGSEKYDIKGTPSFIIDGKTHDGDMEIEDFDKILQP
LLP*
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mRNA from alignment at P-wetherbeei_contig1713:2161..2772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1713.4.1 ID=mRNA_P-wetherbeei_contig1713.4.1|Name=mRNA_P-wetherbeei_contig1713.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig1713:2161..2772+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGCTGGCCGGCTGGCTCGCCATTGGCGTACTGGGCGGCTTCAGTTC GGTATCGGCGGAAGAACCGGCCGCCACGCCTGCTGCATCCGGCGTCTTTA CGGGCGAAATCGTGCTGGGAAAAGCTGAGGCCCCGGTCACGATTATTGAA TATGCGTCGATGACCTGTCCGCATTGCGCCAATTTCCATACGAAGGTTCT GCCTGCGCTCAAGGAAAAATACATCGATACCGGCAAGGTAAAACTGTTCT TCCGTGAATTCCCGCTGGACGGGGTGGCGCTACGCGCTTCCATGCTGGCG CGTTGCGGCGGTGAAGCGAAAGCCCATCCGCTCATTGATATCCTGTTCAA ACAACAGACGGTCTGGGCCACATCTGAGGATCCGCTGGCGGCGCTGGCCC GGGTCGCCAGGCTGGGCGGCATGAGTCAGGCGGCCTTTGACGCCTGTATG GCGGATGAAGCGCTGATGAAGCAGCTGGTCCAAAGCCGGCAGGATGGTTC GGAAAAATACGACATCAAGGGAACACCCAGCTTCATCATCGACGGTAAAA CCCATGATGGTGATATGGAAATCGAAGACTTCGACAAGATACTGCAACCC CTGCTGCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1713:2161..2772+

>mRNA_P-wetherbeei_contig1713.4.1 ID=mRNA_P-wetherbeei_contig1713.4.1|Name=mRNA_P-wetherbeei_contig1713.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig1713:2161..2772+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGCTGGCCGGCTGGCTCGCCATTGGCGTACTGGGCGGCTTCAGTTC
GGTATCGGCGGAAGAACCGGCCGCCACGCCTGCTGCATCCGGCGTCTTTA
CGGGCGAAATCGTGCTGGGAAAAGCTGAGGCCCCGGTCACGATTATTGAA
TATGCGTCGATGACCTGTCCGCATTGCGCCAATTTCCATACGAAGGTTCT
GCCTGCGCTCAAGGAAAAATACATCGATACCGGCAAGGTAAAACTGTTCT
TCCGTGAATTCCCGCTGGACGGGGTGGCGCTACGCGCTTCCATGCTGGCG
CGTTGCGGCGGTGAAGCGAAAGCCCATCCGCTCATTGATATCCTGTTCAA
ACAACAGACGGTCTGGGCCACATCTGAGGATCCGCTGGCGGCGCTGGCCC
GGGTCGCCAGGCTGGGCGGCATGAGTCAGGCGGCCTTTGACGCCTGTATG
GCGGATGAAGCGCTGATGAAGCAGCTGGTCCAAAGCCGGCAGGATGGTTC
GGAAAAATACGACATCAAGGGAACACCCAGCTTCATCATCGACGGTAAAA
CCCATGATGGTGATATGGAAATCGAAGACTTCGACAAGATACTGCAACCC
CTGCTGCCCTGA
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