prot_P-wetherbeei_contig17123.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig17123.1.1
Unique Name	prot_P-wetherbeei_contig17123.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	213

Homology

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A2G9R6T2_LITCT (U5_2-snRNA_bdg domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9R6T2_LITCT)

HSP 1 Score: 402 bits (1034), Expect = 4.260e-141
Identity = 191/213 (89.67%), Postives = 208/213 (97.65%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            ++ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+ QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:    1 MQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 213

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A0S7ETQ1_9TELE (PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETQ1_9TELE)

HSP 1 Score: 402 bits (1034), Expect = 2.190e-140
Identity = 191/213 (89.67%), Postives = 208/213 (97.65%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            ++ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+ QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:   17 MQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 229

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7S1T179_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T179_9CHLO)

HSP 1 Score: 398 bits (1023), Expect = 2.980e-135
Identity = 190/213 (89.20%), Postives = 207/213 (97.18%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            L++FENRVRQILMSSGSTTFTKI NKWNTALIGLMTYFREA V+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPV+FY+PKE+GGLGMLSMGH+LIPQSDLRYS+QTDLGVTHFRAGMSHEE+QLIPNL+RY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT+FK + ++R
Sbjct:  175 LKAFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYSPKEIGGLGMLSMGHILIPQSDLRYSQQTDLGVTHFRAGMSHEEEQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKMFQVLR 387

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: UPI000C6FC39D (pre-mRNA-processing-splicing factor 8-like n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI000C6FC39D)

HSP 1 Score: 395 bits (1015), Expect = 4.130e-135
Identity = 189/209 (90.43%), Postives = 204/209 (97.61%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKY 209
            L+ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSH+EDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR+RT+FK+Y
Sbjct:  229 LQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQY 437

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7L2RQB3_9PASS (PRP8 factor (Fragment) n=1 Tax=Neodrepanis coruscans TaxID=254563 RepID=A0A7L2RQB3_9PASS)

HSP 1 Score: 402 bits (1034), Expect = 1.690e-134
Identity = 191/213 (89.67%), Postives = 208/213 (97.65%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            ++ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+ QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:  423 MQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 635

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A834Z7W1_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834Z7W1_9MAGN)

HSP 1 Score: 400 bits (1027), Expect = 1.690e-134
Identity = 189/213 (88.73%), Postives = 208/213 (97.65%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            ++ FENRVRQILMSSGSTTFTKI NKWNTALIGLMTYFREA V+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPV+FYTPKE+GGLGMLSMGH+LIPQSDLRYS+QTD+GVTHFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA +QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:   50 MKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 262

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7S0LS02_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS02_9EUKA)

HSP 1 Score: 400 bits (1028), Expect = 1.080e-133
Identity = 193/213 (90.61%), Postives = 204/213 (95.77%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            +R FENRVRQ+LMSSGSTTFTKI NKWNTALIGLMTYFREA ++TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKE+GGLGMLSMGHVLIPQSDLR+SKQTD G+THFR+GMSHEEDQLIPNLFRY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT FK Y IMR
Sbjct:  165 MRFFENRVRQVLMSSGSTTFTKIVNKWNTALIGLMTYFREATIHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKEIGGLGMLSMGHVLIPQSDLRFSKQTDAGITHFRSGMSHEEDQLIPNLFRYIQPWESEFVDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTQFKDYQIMR 377

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A396JHQ0_MEDTR (Putative ribonuclease H-like domain, pre-mRNA-processing-splicing factor 8, U5-snRNA-binding protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JHQ0_MEDTR)

HSP 1 Score: 384 bits (986), Expect = 1.980e-133
Identity = 183/213 (85.92%), Postives = 201/213 (94.37%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            ++ FENRVRQILMSS S TFTKI NKWNTALIGLMTYFREA V+TQE+LDLLVKCENKIQTRIKIGL+SKMPSRFPPV+FYTPKE+GGLGMLSMGH+LIP SDLRYS+QTD+ VTHFR+GMSHEEDQLIPNL+RY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRH LAYDKGWRVR DFK+Y +++
Sbjct:   37 MKVFENRVRQILMSSCSNTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLSSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPHSDLRYSQQTDVAVTHFRSGMSHEEDQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHALAYDKGWRVRRDFKQYQVLK 249

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7S2STJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STJ4_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 2.490e-133
Identity = 197/213 (92.49%), Postives = 208/213 (97.65%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            LR+FENR+RQILMSSGSTTFTKIANKWNT+LIGLMTYFREAVVNT+E+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY PKELGGLGMLSMGHVLIPQSDLRYSKQTD GVTHFRAGMSHEEDQ+IPNLFRY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR+RT FK+YT+MR
Sbjct:  622 LRTFENRIRQILMSSGSTTFTKIANKWNTSLIGLMTYFREAVVNTEEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYCPKELGGLGMLSMGHVLIPQSDLRYSKQTDTGVTHFRAGMSHEEDQVIPNLFRYIQPWESEFVDSQRVWAEYALKRQEANVQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRMRTQFKQYTLMR 834

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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A5E4G1M1_PRUDU (PREDICTED: pre-mRNA-processing-splicing factor n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G1M1_PRUDU)

HSP 1 Score: 389 bits (1000), Expect = 7.790e-133
Identity = 181/213 (84.98%), Postives = 205/213 (96.24%), Query Frame = 0

Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 213
            ++ FENRVRQIL+SSGSTTFTK+ NKWNT LIGLMTYFREA V+TQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPV+FYTPKE+GGLGMLSMGH+LIPQSDLRYS+QTD GVTHFR+GM+HEEDQL+PNL+RY+QPWESEF+DSQRVWAEYA+K+QEA  QNRRLTLEDLEDSW+RG+PRINTLFQKDRHTLAYDKGWRVRT+FK+Y +++
Sbjct:  114 MKVFENRVRQILISSGSTTFTKVVNKWNTDLIGLMTYFREATVHTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDFGVTHFRSGMNHEEDQLLPNLYRYIQPWESEFIDSQRVWAEYAMKRQEAQAQNRRLTLEDLEDSWNRGVPRINTLFQKDRHTLAYDKGWRVRTEFKQYQVLK 326

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2G9R6T2_LITCT	4.260e-141	89.67	U5_2-snRNA_bdg domain-containing protein n=1 Tax=L...	[more]
A0A0S7ETQ1_9TELE	2.190e-140	89.67	PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax...	[more]
A0A7S1T179_9CHLO	2.980e-135	89.20	Hypothetical protein (Fragment) n=1 Tax=Tetraselmi...	[more]
UPI000C6FC39D	4.130e-135	90.43	pre-mRNA-processing-splicing factor 8-like n=1 Tax...	[more]
A0A7L2RQB3_9PASS	1.690e-134	89.67	PRP8 factor (Fragment) n=1 Tax=Neodrepanis corusca...	[more]
A0A834Z7W1_9MAGN	1.690e-134	88.73	Uncharacterized protein n=1 Tax=Tetracentron sinen...	[more]
A0A7S0LS02_9EUKA	1.080e-133	90.61	Hypothetical protein (Fragment) n=1 Tax=Coccolithu...	[more]
A0A396JHQ0_MEDTR	1.980e-133	85.92	Putative ribonuclease H-like domain, pre-mRNA-proc...	[more]
A0A7S2STJ4_9STRA	2.490e-133	92.49	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A5E4G1M1_PRUDU	7.790e-133	84.98	PREDICTED: pre-mRNA-processing-splicing factor n=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042516	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily	GENE3D	3.30.43.40		coord: 1..67 e-value: 3.5E-36 score: 125.7
IPR019581	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding	PFAM	PF10597	U5_2-snRNA_bdg	coord: 2..107 e-value: 4.5E-61 score: 204.8
IPR027652	Pre-mRNA-processing-splicing factor 8	PANTHER	PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	coord: 2..213

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig17123	contig	P-wetherbeei_contig17123:47..1289 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig17123.1.1	mRNA_P-wetherbeei_contig17123.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig17123 47..1289 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig17123.1.1 ID=prot_P-wetherbeei_contig17123.1.1|Name=mRNA_P-wetherbeei_contig17123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLD
LLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIP
QSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVW
AEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGW
RVRTDFKKYTIMR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR042516	Prp8_U5-snRNA-bd_sf
IPR019581	Prp8_U5-snRNA-bd
IPR027652	PRP8