mRNA_P-wetherbeei_contig17123.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17123.1.1
Unique NamemRNA_P-wetherbeei_contig17123.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A2G9R6T2_LITCT (U5_2-snRNA_bdg domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9R6T2_LITCT)

HSP 1 Score: 402 bits (1034), Expect = 4.260e-141
Identity = 191/213 (89.67%), Postives = 208/213 (97.65%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            ++ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+ QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:    1 MQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 213
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A0S7ETQ1_9TELE (PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETQ1_9TELE)

HSP 1 Score: 402 bits (1034), Expect = 2.190e-140
Identity = 191/213 (89.67%), Postives = 208/213 (97.65%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            ++ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+ QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:   17 MQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 229
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7S1T179_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T179_9CHLO)

HSP 1 Score: 398 bits (1023), Expect = 2.980e-135
Identity = 190/213 (89.20%), Postives = 207/213 (97.18%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            L++FENRVRQILMSSGSTTFTKI NKWNTALIGLMTYFREA V+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPV+FY+PKE+GGLGMLSMGH+LIPQSDLRYS+QTDLGVTHFRAGMSHEE+QLIPNL+RY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT+FK + ++R
Sbjct:  175 LKAFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYSPKEIGGLGMLSMGHILIPQSDLRYSQQTDLGVTHFRAGMSHEEEQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKMFQVLR 387
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: UPI000C6FC39D (pre-mRNA-processing-splicing factor 8-like n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI000C6FC39D)

HSP 1 Score: 395 bits (1015), Expect = 4.130e-135
Identity = 189/209 (90.43%), Postives = 204/209 (97.61%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKY 627
            L+ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSH+EDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR+RT+FK+Y
Sbjct:  229 LQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQY 437
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7L2RQB3_9PASS (PRP8 factor (Fragment) n=1 Tax=Neodrepanis coruscans TaxID=254563 RepID=A0A7L2RQB3_9PASS)

HSP 1 Score: 402 bits (1034), Expect = 1.690e-134
Identity = 191/213 (89.67%), Postives = 208/213 (97.65%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            ++ F NRVRQILM+SGSTTFTKI NKWNTALIGLMTYFREAVVNTQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR+SKQTD+G+THFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA+ QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:  423 MQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 635
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A834Z7W1_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834Z7W1_9MAGN)

HSP 1 Score: 400 bits (1027), Expect = 1.690e-134
Identity = 189/213 (88.73%), Postives = 208/213 (97.65%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            ++ FENRVRQILMSSGSTTFTKI NKWNTALIGLMTYFREA V+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPV+FYTPKE+GGLGMLSMGH+LIPQSDLRYS+QTD+GVTHFR+GMSHEEDQLIPNL+RY+QPWESEF+DSQRVWAEYALK+QEA +QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK+Y +++
Sbjct:   50 MKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK 262
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7S0LS02_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS02_9EUKA)

HSP 1 Score: 400 bits (1028), Expect = 1.080e-133
Identity = 193/213 (90.61%), Postives = 204/213 (95.77%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            +R FENRVRQ+LMSSGSTTFTKI NKWNTALIGLMTYFREA ++TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKE+GGLGMLSMGHVLIPQSDLR+SKQTD G+THFR+GMSHEEDQLIPNLFRY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT FK Y IMR
Sbjct:  165 MRFFENRVRQVLMSSGSTTFTKIVNKWNTALIGLMTYFREATIHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKEIGGLGMLSMGHVLIPQSDLRFSKQTDAGITHFRSGMSHEEDQLIPNLFRYIQPWESEFVDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTQFKDYQIMR 377
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A396JHQ0_MEDTR (Putative ribonuclease H-like domain, pre-mRNA-processing-splicing factor 8, U5-snRNA-binding protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JHQ0_MEDTR)

HSP 1 Score: 384 bits (986), Expect = 1.980e-133
Identity = 183/213 (85.92%), Postives = 201/213 (94.37%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            ++ FENRVRQILMSS S TFTKI NKWNTALIGLMTYFREA V+TQE+LDLLVKCENKIQTRIKIGL+SKMPSRFPPV+FYTPKE+GGLGMLSMGH+LIP SDLRYS+QTD+ VTHFR+GMSHEEDQLIPNL+RY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRH LAYDKGWRVR DFK+Y +++
Sbjct:   37 MKVFENRVRQILMSSCSNTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLSSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPHSDLRYSQQTDVAVTHFRSGMSHEEDQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHALAYDKGWRVRRDFKQYQVLK 249
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A7S2STJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STJ4_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 2.490e-133
Identity = 197/213 (92.49%), Postives = 208/213 (97.65%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            LR+FENR+RQILMSSGSTTFTKIANKWNT+LIGLMTYFREAVVNT+E+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY PKELGGLGMLSMGHVLIPQSDLRYSKQTD GVTHFRAGMSHEEDQ+IPNLFRY+QPWESEFVDSQRVWAEYALK+QEA  QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR+RT FK+YT+MR
Sbjct:  622 LRTFENRIRQILMSSGSTTFTKIANKWNTSLIGLMTYFREAVVNTEEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYCPKELGGLGMLSMGHVLIPQSDLRYSKQTDTGVTHFRAGMSHEEDQVIPNLFRYIQPWESEFVDSQRVWAEYALKRQEANVQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRMRTQFKQYTLMR 834
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BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Match: A0A5E4G1M1_PRUDU (PREDICTED: pre-mRNA-processing-splicing factor n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G1M1_PRUDU)

HSP 1 Score: 389 bits (1000), Expect = 7.790e-133
Identity = 181/213 (84.98%), Postives = 205/213 (96.24%), Query Frame = 1 
Query:    1 LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVWAEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKKYTIMR 639
            ++ FENRVRQIL+SSGSTTFTK+ NKWNT LIGLMTYFREA V+TQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPV+FYTPKE+GGLGMLSMGH+LIPQSDLRYS+QTD GVTHFR+GM+HEEDQL+PNL+RY+QPWESEF+DSQRVWAEYA+K+QEA  QNRRLTLEDLEDSW+RG+PRINTLFQKDRHTLAYDKGWRVRT+FK+Y +++
Sbjct:  114 MKVFENRVRQILISSGSTTFTKVVNKWNTDLIGLMTYFREATVHTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDFGVTHFRSGMNHEEDQLLPNLYRYIQPWESEFIDSQRVWAEYAMKRQEAQAQNRRLTLEDLEDSWNRGVPRINTLFQKDRHTLAYDKGWRVRTEFKQYQVLK 326
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17123.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G9R6T2_LITCT4.260e-14189.67U5_2-snRNA_bdg domain-containing protein n=1 Tax=L... [more]
A0A0S7ETQ1_9TELE2.190e-14089.67PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax... [more]
A0A7S1T179_9CHLO2.980e-13589.20Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
UPI000C6FC39D4.130e-13590.43pre-mRNA-processing-splicing factor 8-like n=1 Tax... [more]
A0A7L2RQB3_9PASS1.690e-13489.67PRP8 factor (Fragment) n=1 Tax=Neodrepanis corusca... [more]
A0A834Z7W1_9MAGN1.690e-13488.73Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A7S0LS02_9EUKA1.080e-13390.61Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A396JHQ0_MEDTR1.980e-13385.92Putative ribonuclease H-like domain, pre-mRNA-proc... [more]
A0A7S2STJ4_9STRA2.490e-13392.49Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5E4G1M1_PRUDU7.790e-13384.98PREDICTED: pre-mRNA-processing-splicing factor n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17123contigP-wetherbeei_contig17123:47..1289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLJ8
PFAMsJAB,PRO8NT,PROCN,PROCT,PRP8_domainIV,RRM_4,U5_2-snRNA_bdg,U6-snRNA_bdg
Model size639
Max annot lvl2759|Eukaryota
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons3
Evalue1.24e-130
EggNOG OGsCOG5178@1|root,KOG1795@2759|Eukaryota
DescriptionU5 snRNA binding
Cds size639
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.6486807-CDS-P-wetherbeei_contig17123:46..1871683186108.6486807-CDS-P-wetherbeei_contig17123:46..187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17123 47..187 +
1683186108.6608567-CDS-P-wetherbeei_contig17123:480..8281683186108.6608567-CDS-P-wetherbeei_contig17123:480..828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17123 481..828 +
1683186108.6765587-CDS-P-wetherbeei_contig17123:1139..12891683186108.6765587-CDS-P-wetherbeei_contig17123:1139..1289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17123 1140..1289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17123.1.1prot_P-wetherbeei_contig17123.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17123 47..1289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17123.1.1

>prot_P-wetherbeei_contig17123.1.1 ID=prot_P-wetherbeei_contig17123.1.1|Name=mRNA_P-wetherbeei_contig17123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
LRSFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEVLD
LLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIP
QSDLRYSKQTDLGVTHFRAGMSHEEDQLIPNLFRYLQPWESEFVDSQRVW
AEYALKKQEAVTQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGW
RVRTDFKKYTIMR
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mRNA from alignment at P-wetherbeei_contig17123:47..1289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17123.1.1 ID=mRNA_P-wetherbeei_contig17123.1.1|Name=mRNA_P-wetherbeei_contig17123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1243bp|location=Sequence derived from alignment at P-wetherbeei_contig17123:47..1289+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTCTTTCGAGAACCGCGTGCGCCAGATCCTCATGAGCAGCGGCAG
CACGACGTTCACAAAGATAGCCAACAAGTGGAACACGGCGCTCATCGGCC
TCATGACCTACTTCCGCGAGGCCGTCGTTAACACTCAGGAGGTGCGGAGG
GTTATGGCGGTAGAGCGGGCGACGAACAGACAGAATTTTTCGCTTTTGTG
TCTTCAGTTTCAAGAACGCGTGTTTCCTTATTTTCCTCTTGCCGCCGCCT
TCCTTAAGCAACCCTCTATTGACGCGGATTGCGCAATGACAGACAGAACC
GCCTTCCCTCACAGTCATATTCTCGTTCGTCTCCCTGTCGCTGTCCGTGT
TGCTGCCAACTCGGGTTTTGTCCCGTCCGGCTGATGCTTTTGAAACCAAA
CTCTTCGGTTTGTGCGCCGCTACGCTTTACGCAGGTGCTGGACCTGCTGG
TCAAGTGCGAGAACAAGATTCAAACGCGCATCAAGATTGGCCTCAACTCT
AAGATGCCCTCGCGCTTCCCGCCCGTCGTCTTCTACACGCCCAAAGAGCT
GGGCGGGCTCGGCATGCTGTCCATGGGACACGTGCTCATCCCGCAGTCCG
ACCTGCGCTACTCGAAGCAGACGGACCTCGGGGTGACGCATTTCCGGGCG
GGCATGTCGCACGAAGAGGACCAGCTGATCCCCAACCTGTTCCGGTACCT
GCAGCCATGGGAGAGCGAGTTCGTGGACTCGCAGCGGGTGTGGGCGGAAT
ACGCGCTCAAGAAGCAGGAGGCCGTCACGCAGGTCCGTTGTGGTCCGTTT
TGTTTTATGAATCTAATTTTAGGCGTTTGGCGTTTTATGAGCTTAACTTT
GGGGTGGATAGCGACAAAGCTGAGAGCAAGCACGTGTTGTTTAGCAGCTC
GTGCGCTACTTTTTCGCTGGCGAGTCTTAATGTAGAGTCCAGCGCTCTTT
CTGTGGGTATTGTGTGCCTGCGGCGATGGTTACAGCAACGCTTCAGTTGT
GATTCTACCAGCTATTGATCTATTCGGATTTCTGACTCTTTTCCTTTCCG
TCGCGTCCACCCTTCTCTTTTTTGACTCTGTATTGGAGCACAGAACCGGC
GGCTGACGCTGGAGGACCTCGAGGATTCGTGGGACCGCGGCATACCGCGG
ATCAACACACTCTTCCAGAAGGACCGCCACACGCTGGCCTACGACAAGGG
CTGGCGGGTGCGCACCGACTTCAAGAAGTACACCATCATGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17123:47..1289+

>mRNA_P-wetherbeei_contig17123.1.1 ID=mRNA_P-wetherbeei_contig17123.1.1|Name=mRNA_P-wetherbeei_contig17123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig17123:47..1289+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTCTTTCGAGAACCGCGTGCGCCAGATCCTCATGAGCAGCGGCAG
CACGACGTTCACAAAGATAGCCAACAAGTGGAACACGGCGCTCATCGGCC
TCATGACCTACTTCCGCGAGGCCGTCGTTAACACTCAGGAGGTGCTGGAC
CTGCTGGTCAAGTGCGAGAACAAGATTCAAACGCGCATCAAGATTGGCCT
CAACTCTAAGATGCCCTCGCGCTTCCCGCCCGTCGTCTTCTACACGCCCA
AAGAGCTGGGCGGGCTCGGCATGCTGTCCATGGGACACGTGCTCATCCCG
CAGTCCGACCTGCGCTACTCGAAGCAGACGGACCTCGGGGTGACGCATTT
CCGGGCGGGCATGTCGCACGAAGAGGACCAGCTGATCCCCAACCTGTTCC
GGTACCTGCAGCCATGGGAGAGCGAGTTCGTGGACTCGCAGCGGGTGTGG
GCGGAATACGCGCTCAAGAAGCAGGAGGCCGTCACGCAGAACCGGCGGCT
GACGCTGGAGGACCTCGAGGATTCGTGGGACCGCGGCATACCGCGGATCA
ACACACTCTTCCAGAAGGACCGCCACACGCTGGCCTACGACAAGGGCTGG
CGGGTGCGCACCGACTTCAAGAAGTACACCATCATGCGC
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