mRNA_P-wetherbeei_contig17121.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17121.1.1
Unique NamemRNA_P-wetherbeei_contig17121.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A7S4HQZ6_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQZ6_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.970e-50
Identity = 86/120 (71.67%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 QVVIARDGGIRPAISAMRSRHVEVQREAGRLLANLCASERH--TEAITEGGGHQLLISYLLSQDTACQRVGALGIGNLCTHSALRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            Q +IAR+GGIRP IS MRSR VEVQRE+GRLLANLCAS+    T  I E GGH LLIS+LLSQDTACQ+VGA GIGNLCTH   R  LM AGVL+PLCSLARSE+ ELEI+R+++LA+AN
Sbjct:   16 QEIIAREGGIRPCISVMRSRFVEVQRESGRLLANLCASKADFCTTGIVEAGGHHLLISFLLSQDTACQQVGAFGIGNLCTHDQHRVTLMKAGVLEPLCSLARSEDIELEIKRFSILAIAN 135          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A482RX83_9ARCH (Vacuolar protein 8 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX83_9ARCH)

HSP 1 Score: 118 bits (296), Expect = 2.720e-30
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 1
Query:  106 CASERH-TEAITEGGGHQLLISYLLSQDTACQRVGALGIGNLCTHSALRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            CASE   T  I EGGGH LLISYLLS DTACQRVG+LGI NLCT +  R +L++ GVL+PLCSLARSE+ ELEIQRYAVLA+A+
Sbjct:  199 CASESEFTNLIIEGGGHNLLISYLLSNDTACQRVGSLGICNLCTQARYREILIECGVLEPLCSLARSEDVELEIQRYAVLAIAS 282          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: K0RWP8_THAOC (Vacuolar protein 8 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWP8_THAOC)

HSP 1 Score: 120 bits (302), Expect = 2.160e-29
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 1
Query:   49 MRSRHVEVQREAGRLLANL--CASERHTEAITEGGGHQLLISYLLSQDTACQRVGALGIGNLCTHSALRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            MRSRH+EV RE+ RLL+NL  C S    + I +  GH LLIS+LL+QD  CQR GA GIGNLCTH   R  LMDAGVL+PL +LARS + ELEI+R+ +LALAN
Sbjct:  700 MRSRHIEVMRESSRLLSNLSACDSPFAADQIIKNRGHDLLISFLLNQDVNCQRNGAFGIGNLCTHDHHRVALMDAGVLEPLVTLARSGKVELEIRRFCMLALAN 803          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A8J2SEI2_9STRA (Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEI2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.390e-28
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  100 NLCASERHT-EAITEGGGHQLLISYLLSQDTACQRVGALGIGNLCTHSALRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            NLCAS+  T +       HQLLISYLLSQDTACQRVGALGIGNLCT    R  LMD+GVL+PLC+LARSE+ ELEIQRYAVLA+AN
Sbjct:  608 NLCASDSETSDMXXXXXXHQLLISYLLSQDTACQRVGALGIGNLCTQERHRVPLMDSGVLEPLCTLARSEDIELEIQRYAVLAIAN 693          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A7S2HIV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HIV2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.550e-27
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 QVVIARDGGIRPAISAMRSRHVEVQREAGRLLANLCASE-RHTEAITEGGGHQLLISYLLSQDTACQRVGALGIGNLCTHSALR 249
            Q  +  +GGIR  I+ MRSR+VEVQREAGRLLANL A +   ++ I  GGGHQLLISYLLSQD+ACQR+GALGIGNLCT    R
Sbjct:   18 QKFVTDEGGIRHCINVMRSRYVEVQREAGRLLANLAALDGAASDDIIAGGGHQLLISYLLSQDSACQRIGALGIGNLCTQERQR 101          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A7S2P367_9STRA (Vacuolar protein 8 n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P367_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.090e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1
Query:  106 CASERHT--EAITEGGGHQLLISYLLSQDTACQRVGALGIGNLCTHSALRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            CAS      ++I + GGHQLLIS+LLS+DTACQRVG  G+GNLCTH   R  LM AGVL+PLCSLAR E+  +EIQR+AVLA+AN
Sbjct:  628 CASSTSASIDSIVDSGGHQLLISFLLSEDTACQRVGGFGVGNLCTHDKHRVTLMKAGVLEPLCSLARLEDIAVEIQRFAVLAIAN 712          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A2D4CA65_PYTIN (Delta-aminolevulinic acid dehydratase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CA65_PYTIN)

HSP 1 Score: 56.6 bits (135), Expect = 7.330e-7
Identity = 26/41 (63.41%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  232 THSALRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            T++ALR LLM++G ++PL SLARSE+ ELEIQR+A+LA+A 
Sbjct:  995 TNAALRVLLMESGAMEPLMSLARSEDVELEIQRFAILAIAK 1035          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A7S3HDP9_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDP9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.740e-6
Identity = 25/33 (75.76%), Postives = 31/33 (93.94%), Query Frame = 1
Query:  256 LMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            +++ GVL+PLCSLARSE+ ELEIQRYAVLA+AN
Sbjct:    1 MIECGVLEPLCSLARSEDVELEIQRYAVLAIAN 33          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: A0A2D4BS91_PYTIN (Vacuolar protein 8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS91_PYTIN)

HSP 1 Score: 54.3 bits (129), Expect = 4.700e-6
Identity = 25/38 (65.79%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  232 THSALRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLA 345
            T++ALR LLM++G ++PL SLARSE+ ELEIQR+A+LA
Sbjct:  652 TNAALRVLLMESGAMEPLMSLARSEDVELEIQRFAILA 689          
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Match: K3WML6_GLOUD (Vacuolar protein 8 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WML6_GLOUD)

HSP 1 Score: 52.4 bits (124), Expect = 2.220e-5
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1
Query:  244 LRPLLMDAGVLDPLCSLARSEEAELEIQRYAVLALAN 354
            +R LLM++G ++PL SLARSE+ ELEIQR+++LA+AN
Sbjct:  656 MRVLLMESGAMEPLMSLARSEDVELEIQRFSILAIAN 692          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17121.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S4HQZ6_9STRA3.970e-5071.67Vacuolar protein 8 (Fragment) n=1 Tax=Odontella au... [more]
A0A482RX83_9ARCH2.720e-3071.43Vacuolar protein 8 n=1 Tax=archaeon TaxID=1906665 ... [more]
K0RWP8_THAOC2.160e-2961.54Vacuolar protein 8 n=1 Tax=Thalassiosira oceanica ... [more]
A0A8J2SEI2_9STRA1.390e-2872.09Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata ... [more]
A0A7S2HIV2_9STRA1.550e-2766.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2P367_9STRA5.090e-2664.71Vacuolar protein 8 n=2 Tax=Leptocylindrus danicus ... [more]
A0A2D4CA65_PYTIN7.330e-763.41Delta-aminolevulinic acid dehydratase n=1 Tax=Pyth... [more]
A0A7S3HDP9_9STRA1.740e-675.76Vacuolar protein 8 (Fragment) n=1 Tax=Spumella elo... [more]
A0A2D4BS91_PYTIN4.700e-665.79Vacuolar protein 8 n=1 Tax=Pythium insidiosum TaxI... [more]
K3WML6_GLOUD2.220e-562.16Vacuolar protein 8 n=1 Tax=Globisporangium ultimum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17121contigP-wetherbeei_contig17121:15..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0RWP8
PFAMsArm
Model size354
Max annot lvl2836|Bacillariophyta
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.55e-30
EggNOG OGsCOG5064@1|root,KOG4224@1|root,KOG0166@2759|Eukaryota,KOG4224@2759|Eukaryota,2XFUU@2836|Bacillariophyta
DescriptionArmadillo/beta-catenin-like repeat
Cds size354
COG categoryU
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.6129637-CDS-P-wetherbeei_contig17121:14..3411683186108.6129637-CDS-P-wetherbeei_contig17121:14..341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17121 15..341 +
1683186108.622011-CDS-P-wetherbeei_contig17121:594..6211683186108.622011-CDS-P-wetherbeei_contig17121:594..621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17121 595..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17121.1.1prot_P-wetherbeei_contig17121.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17121 15..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17121.1.1

>prot_P-wetherbeei_contig17121.1.1 ID=prot_P-wetherbeei_contig17121.1.1|Name=mRNA_P-wetherbeei_contig17121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
QVVIARDGGIRPAISAMRSRHVEVQREAGRLLANLCASERHTEAITEGGG
HQLLISYLLSQDTACQRVGALGIGNLCTHSALRPLLMDAGVLDPLCSLAR
SEEAELEIQRYAVLALAN
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mRNA from alignment at P-wetherbeei_contig17121:15..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17121.1.1 ID=mRNA_P-wetherbeei_contig17121.1.1|Name=mRNA_P-wetherbeei_contig17121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=607bp|location=Sequence derived from alignment at P-wetherbeei_contig17121:15..621+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGTGATCGCGCGGGACGGCGGCATCCGGCCGGCCATCTCGGCGAT GCGGTCACGCCACGTTGAGGTGCAGCGCGAGGCCGGCCGCCTGCTGGCCA ACCTCTGCGCCAGTGAGCGGCACACCGAGGCCATCACGGAGGGTGGCGGC CACCAGCTGCTCATCTCCTACCTGCTGAGCCAGGACACGGCCTGCCAGCG TGTCGGGGCGCTCGGCATCGGCAACCTATGCACACATTCGGCGCTGCGGC CGCTCCTGATGGACGCCGGTGTATTGGATCCGCTATGCTCGCTGGCGCGC AGCGAGGAGGCTGAGCTCGAGATCCAGGTGCGTTGTTTGAGAGGCGGGCA GCAGTAATGTTTTCTGGTTATGCAGGGCTACGTCGACCAAGACTTGGGGG CGAAGCAGGTTTTTACACTTCTGCTGCTGGCTGCAGTTGCTCTCTTCGCG TACCAGATATGGGGGTCTTTGCTTGCTGGCTAGTCAATCGTGCTTTTATA GTAGACTAATTGCTCATTCGTGCCAGAGCAGCCGTGTCATAGCTCCAGTA CCTTTCTACACACACAAAAACATAATGCAGCGCTACGCGGTGCTGGCGCT GGCGAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17121:15..621+

>mRNA_P-wetherbeei_contig17121.1.1 ID=mRNA_P-wetherbeei_contig17121.1.1|Name=mRNA_P-wetherbeei_contig17121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig17121:15..621+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGTGATCGCGCGGGACGGCGGCATCCGGCCGGCCATCTCGGCGAT
GCGGTCACGCCACGTTGAGGTGCAGCGCGAGGCCGGCCGCCTGCTGGCCA
ACCTCTGCGCCAGTGAGCGGCACACCGAGGCCATCACGGAGGGTGGCGGC
CACCAGCTGCTCATCTCCTACCTGCTGAGCCAGGACACGGCCTGCCAGCG
TGTCGGGGCGCTCGGCATCGGCAACCTATGCACACATTCGGCGCTGCGGC
CGCTCCTGATGGACGCCGGTGTATTGGATCCGCTATGCTCGCTGGCGCGC
AGCGAGGAGGCTGAGCTCGAGATCCAGCGCTACGCGGTGCTGGCGCTGGC
GAAT
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