mRNA_P-wetherbeei_contig1712.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1712.5.1
Unique NamemRNA_P-wetherbeei_contig1712.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1712.5.1 vs. uniprot
Match: A0A835YRG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.770e-33
Identity = 78/184 (42.39%), Postives = 107/184 (58.15%), Query Frame = 2 
Query:  254 MGLHSLLITNTQGMLLLARYFDDPNDARGSVGGGGAFSQRLPISAGEGMIRDRAAAMRLWEREVLLQTRHMWDQAALDGAEHVARAKGDVFIVFRAIHGVLVFLCGFDEFDELTLAETLKSFVDVLAALCAESG-KHAKAFEPAILTGDVYGKVFIAIDEMMGGGILEATDQESVLCGSKLKPL 802
            M +HSLLI N +G LL+ RYFD+  +        GA      +++      DR   M+ WE EV  QTR MW  A    A  VAR   DV I++R I  +LVF CG D+ DELTL++ +     V+A LC +S  K A+  E  ++ GD Y KV +A+DEMM GGILEA D ++VL  +K++P+
Sbjct:    1 MVMHSLLILNERGHLLMGRYFDEVLEC-------GALQHLGDVAS------DREQCMQWWEDEVRQQTREMWQFAHT--ANQVARGADDVIIIYRRIGDLLVFACGRDDCDELTLSDVVDCLGGVIATLCEDSSAKGARPTESWLMIGDTYAKVALAVDEMMPGGILEALDPDAVLSMTKMRPI 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1712.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YRG5_9STRA5.770e-3342.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1712contigP-wetherbeei_contig1712:3521..4507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000025585
PFAMsClat_adaptor_s
Model size987
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.68e-08
EggNOG OGs29XBH@1|root,2RXRG@2759|Eukaryota,1MGTF@121069|Pythiales
Ec32 ortholog descriptionLongin-like domain
Ec32 orthologEc-28_000320.1
DescriptionLongin. Source PGD
Cds size558
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.5536332-UTR-P-wetherbeei_contig1712:3520..37731683186108.5536332-UTR-P-wetherbeei_contig1712:3520..3773Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1712 3521..3773 +
1683186108.5736108-UTR-P-wetherbeei_contig1712:4331..45071683186108.5736108-UTR-P-wetherbeei_contig1712:4331..4507Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1712 4332..4507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.5645237-CDS-P-wetherbeei_contig1712:3773..43311683186108.5645237-CDS-P-wetherbeei_contig1712:3773..4331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1712 3774..4331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1712.5.1prot_P-wetherbeei_contig1712.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1712 3774..4331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1712.5.1

>prot_P-wetherbeei_contig1712.5.1 ID=prot_P-wetherbeei_contig1712.5.1|Name=mRNA_P-wetherbeei_contig1712.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MGLHSLLITNTQGMLLLARYFDDPNDARGSVGGGGAFSQRLPISAGEGMI
RDRAAAMRLWEREVLLQTRHMWDQAALDGAEHVARAKGDVFIVFRAIHGV
LVFLCGFDEFDELTLAETLKSFVDVLAALCAESGKHAKAFEPAILTGDVY
GKVFIAIDEMMGGGILEATDQESVLCGSKLKPLVA*
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mRNA from alignment at P-wetherbeei_contig1712:3521..4507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1712.5.1 ID=mRNA_P-wetherbeei_contig1712.5.1|Name=mRNA_P-wetherbeei_contig1712.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig1712:3521..4507+ (Phaeothamnion wetherbeei SAG_119_79)
GAACGGGAGTCGGCAGCCTTGCACGCGAACAAGGAACGGGACAGCGCGAG
CGACGAGAAAATCTCGGGAGGGAGCGCCCGAAGCAGCCGAGAAAAAGGCT
GCCCTTCTTCGCACATCGCGGAGCGTCCAAACAAAGTAACGTCCCTCACA
TTAAGATCGCGTCGCAGACCGACATTGATTTCGCAACAAATCAATTGGCA
TCGGGCACCTTGGTTCGAGTATCACCGCGGGAACGGCGTCGTCCTGGACA
AGTATGGGCCTACACAGCCTACTGATCACCAACACGCAGGGAATGCTCTT
GCTCGCGAGATACTTTGACGATCCAAACGACGCCAGAGGAAGCGTAGGCG
GCGGTGGAGCTTTCTCGCAGCGGCTGCCCATTTCGGCCGGCGAGGGCATG
ATTCGGGACCGCGCCGCCGCCATGCGCCTCTGGGAGCGCGAGGTGCTCCT
CCAGACGCGCCACATGTGGGACCAGGCGGCGCTAGACGGCGCCGAGCACG
TCGCCCGTGCCAAGGGCGATGTTTTCATCGTCTTCCGTGCGATTCACGGC
GTGCTCGTCTTCCTCTGTGGCTTCGACGAGTTCGACGAACTGACGCTGGC
CGAGACGCTGAAATCGTTCGTGGACGTTTTGGCGGCGCTTTGCGCCGAGA
GCGGCAAGCACGCCAAAGCGTTTGAGCCGGCAATTCTTACTGGCGACGTC
TATGGGAAGGTCTTCATCGCGATCGACGAGATGATGGGCGGTGGGATCCT
GGAGGCGACGGACCAGGAATCGGTGCTCTGCGGCAGCAAATTAAAGCCGC
TCGTGGCATAGTCTAGTCTAGGAAAAGAAACGGGGAAGAAAAGAAAGGAT
TGAATTTTCGCGGGCCTGGATCCCGATGCAAAACGAAACATGTGCATAAA
ATCCTTATCACTTGCGCAGAAAAGCCGCCTCCCGGCAGACGCTCGCTCGC
TGAAGCAAATAAAGGAAGAGGGTGTTTTACTAAGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1712:3521..4507+

>mRNA_P-wetherbeei_contig1712.5.1 ID=mRNA_P-wetherbeei_contig1712.5.1|Name=mRNA_P-wetherbeei_contig1712.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig1712:3521..4507+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCTACACAGCCTACTGATCACCAACACGCAGGGAATGCTCTTGCT
CGCGAGATACTTTGACGATCCAAACGACGCCAGAGGAAGCGTAGGCGGCG
GTGGAGCTTTCTCGCAGCGGCTGCCCATTTCGGCCGGCGAGGGCATGATT
CGGGACCGCGCCGCCGCCATGCGCCTCTGGGAGCGCGAGGTGCTCCTCCA
GACGCGCCACATGTGGGACCAGGCGGCGCTAGACGGCGCCGAGCACGTCG
CCCGTGCCAAGGGCGATGTTTTCATCGTCTTCCGTGCGATTCACGGCGTG
CTCGTCTTCCTCTGTGGCTTCGACGAGTTCGACGAACTGACGCTGGCCGA
GACGCTGAAATCGTTCGTGGACGTTTTGGCGGCGCTTTGCGCCGAGAGCG
GCAAGCACGCCAAAGCGTTTGAGCCGGCAATTCTTACTGGCGACGTCTAT
GGGAAGGTCTTCATCGCGATCGACGAGATGATGGGCGGTGGGATCCTGGA
GGCGACGGACCAGGAATCGGTGCTCTGCGGCAGCAAATTAAAGCCGCTCG
TGGCATAG
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