mRNA_P-wetherbeei_contig17111.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17111.1.1
Unique NamemRNA_P-wetherbeei_contig17111.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: UPI001D014C45 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D014C45)

HSP 1 Score: 162 bits (410), Expect = 4.510e-45
Identity = 80/154 (51.95%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            PG+P H ++LK+G PV+LLRN+N S G  NGTR  ++ + + F+E  I TGTN G +VYIPRI+ +P+DS  PF L+RRQ P+ +  ++TINK+QGQ+L  VGLYL  QVF HGQ Y+A SRV     L V + +   + E N   NIVYKEIL
Sbjct:  138 PGIPDHEIRLKVGLPVMLLRNINQSEGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPSDSKWPFVLKRRQYPISVCFAMTINKSQGQSLKHVGLYLPKQVFIHGQLYVAVSRVTSRDGLKVLISDE-ESKENNSAKNIVYKEIL 290          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A2I0AB67_9ASPA (ATP-dependent DNA helicase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AB67_9ASPA)

HSP 1 Score: 161 bits (408), Expect = 6.680e-45
Identity = 78/162 (48.15%), Postives = 112/162 (69.14%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEILT*IKRSTS 715
            PG+P H+L+LK+ TP++LL+NL+ + G  NGTR IV+ +    +E +I TGTN G +V IPRI+ T + SDLPF ++RRQ P+ +A ++TINK+QGQTL  +GL L T +F+HGQ Y+A SR     +L V L N +  P G +  NIVYK++LT + +  S
Sbjct:   92 PGLPTHKLELKVNTPIMLLKNLDQTNGLCNGTRLIVTRIGDRVIEAEIITGTNIGEKVIIPRIILTSSKSDLPFIIKRRQYPIKVAYAMTINKSQGQTLQHIGLCLQTPIFSHGQLYVALSRASSVHSLKVLLSNNHDIPYG-FTRNIVYKDVLTDVLQQKS 252          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: K3YXY4_SETIT (ATP-dependent DNA helicase n=2 Tax=Setaria italica TaxID=4555 RepID=K3YXY4_SETIT)

HSP 1 Score: 168 bits (426), Expect = 2.030e-44
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            PG+P H+LQLK+G P++LLRN+N S G  NGTR  ++ + + F+E  I TGTN G +VYIPRI+ +P +S  PF L+RRQ P+ +  ++TINK+QGQ+L  VGLYL  QVFTHGQ Y+A SRV     L + + +   +PE N   NIVYKEIL
Sbjct:  525 PGIPNHKLQLKVGLPIMLLRNINQSAGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPTESKWPFVLKRRQYPITVCFAMTINKSQGQSLKNVGLYLPKQVFTHGQLYVAVSRVTSREGLKILISDE-ESPEDNMAKNIVYKEIL 677          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: K3YD59_SETIT (ATP-dependent DNA helicase n=2 Tax=Setaria italica TaxID=4555 RepID=K3YD59_SETIT)

HSP 1 Score: 168 bits (426), Expect = 8.370e-44
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            PG+P H+LQLK+G P++LLRN+N S G  NGTR  ++ + + F+E  I TGTN G +VYIPRI+ +P +S  PF L+RRQ P+ +  ++TINK+QGQ+L  VGLYL  QVFTHGQ Y+A SRV     L + + +   +PE N   NIVYKEIL
Sbjct: 1144 PGIPNHKLQLKVGLPIMLLRNINQSAGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPTESKWPFVLKRRQYPITVCFAMTINKSQGQSLKNVGLYLPKQVFTHGQLYVAVSRVTSREGLKILISDE-ESPEDNMAKNIVYKEIL 1296          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A8I7B9Y8_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I7B9Y8_HORVV)

HSP 1 Score: 159 bits (403), Expect = 3.340e-43
Identity = 75/153 (49.02%), Postives = 106/153 (69.28%), Query Frame = 2
Query:  233 GMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            G+P H L+LK+G P++L+RN+N S G  NGTR  ++ + + F+E  +  GTN G ++YIPRI+ +P+DS  PF L+RRQ P+ +  ++TINK+QGQ+L  VGLYL  QVFTHGQ Y+A SRV +   L + + +  R P  N   NIVYK+IL
Sbjct:  217 GIPDHELRLKVGLPIMLMRNINQSAGLCNGTRLTITQLGKRFIEGRVIQGTNVGDKIYIPRIIMSPSDSKWPFILKRRQYPISVCFAMTINKSQGQSLEKVGLYLQRQVFTHGQLYVAMSRVTNRNGLKILISDEER-PSDNVAKNIVYKDIL 368          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A6S7PDI6_LACSI (ATP-dependent DNA helicase n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7PDI6_LACSI)

HSP 1 Score: 154 bits (388), Expect = 1.160e-42
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            PG+PPH+L LK+  P++LLRN+N   G  NGTR IVS +  T +E  I TGT+  +RVYIPRI F    SDLPF   R+Q P+ +  ++TINK+QGQ+L  +G+YL   VF HGQ Y+A SR   P ++ + L N+  T + N   N+VYKE+L
Sbjct:   40 PGIPPHKLLLKVDCPIMLLRNINQKEGLCNGTRMIVSQLLPTLIEATIITGTSIEKRVYIPRIKFIHKSSDLPFVFSRKQFPVKVCYAMTINKSQGQSLRKIGIYLSQPVFAHGQLYVALSRATSPDSIRILL-NKTDTCKNNETKNVVYKELL 192          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: Q65XV4_ORYSJ (ATP-dependent DNA helicase n=9 Tax=Oryza TaxID=4527 RepID=Q65XV4_ORYSJ)

HSP 1 Score: 164 bits (414), Expect = 3.450e-42
Identity = 82/154 (53.25%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            PGMP H L+LK+G PV+LLRN+N S G  NGTR  ++ + + F+E  I TGT+ G +VYIPRI+ TP +S  PF L+RRQ PL +  ++TINK+QGQ+L  VGLYL  QVFTHGQ Y+AFSRV     L + L +   +P  +   NIVYKEI 
Sbjct: 1373 PGMPNHVLKLKLGLPVMLLRNINQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQYPLSVCFAMTINKSQGQSLNMVGLYLPKQVFTHGQLYVAFSRVTRRDGLRIMLDDN-ESPGEHMVRNIVYKEIF 1525          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A6D2INS2_9BRAS (ATP-dependent DNA helicase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2INS2_9BRAS)

HSP 1 Score: 151 bits (381), Expect = 4.780e-42
Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPE-GNYFDNIVYKEILT*IKRST 712
            PG+P H L LKIG+PV+L+RN+N   G  NGTR IV+ +    +E +I TGT  G++V IPRI+ +P  S  PF L+RRQ PL +  ++TINK+QGQ+L  VGLYL   VF+HGQ Y+A SRV   A LT+   N   T E  N   NIVY+E+   I ++T
Sbjct:   24 PGLPDHYLTLKIGSPVMLIRNMNQKEGLCNGTRLIVTHLGDRVIEAEILTGTRVGKKVLIPRIILSPPYSKWPFKLKRRQFPLRLCYAMTINKSQGQSLKKVGLYLPKPVFSHGQLYVALSRVTSEAGLTIL--NIQTTKEMANTIKNIVYREVFNNIPKTT 183          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: UPI00087088B8 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI00087088B8)

HSP 1 Score: 153 bits (386), Expect = 8.110e-42
Identity = 79/154 (51.30%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            PG+P H+L LK+G PV+LLRNLN S G  NGTR +V  +    VE  I TG+N G RVYIPRI+   + +  PFTLRRRQ PL I  ++TINK+QGQ+L  VGL+L   VF+H Q Y+A SRV     L + + +    P G Y  NIVYK++L
Sbjct:   81 PGLPHHKLALKVGMPVMLLRNLNQSSGLCNGTRLVVMQLTDRIVEAKIITGSNIGERVYIPRIITESSQNKYPFTLRRRQFPLRICYAMTINKSQGQSLKIVGLFLSQTVFSHRQLYVALSRVTSKKGLKIVIAHDCDMPYG-YTKNIVYKDVL 233          
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A8I6WTB4_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WTB4_HORVV)

HSP 1 Score: 155 bits (393), Expect = 9.960e-42
Identity = 76/154 (49.35%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
            PG+P H+L LK+G PV+LLRN+N + G  NGTR  ++ +   ++E  I TGT+ G +VYIPRI+ +P+DS  PF L+RRQ PL +  ++TINK+QGQ+L  VG+YL  QVF HGQ Y+A SRV +   L V + +    P  +   NIVYKEI 
Sbjct:  216 PGIPDHKLTLKMGLPVMLLRNINQAAGLCNGTRMTITQLGNKYIETQIITGTHVGDKVYIPRIIMSPSDSKWPFVLKRRQYPLSVCFAMTINKSQGQSLNKVGIYLPKQVFCHGQLYVALSRVTNKEGLKVLIDDE-ECPTEDVAKNIVYKEIF 368          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D014C454.510e-4551.95ATP-dependent DNA helicase PIF1-like n=1 Tax=Triti... [more]
A0A2I0AB67_9ASPA6.680e-4548.15ATP-dependent DNA helicase n=1 Tax=Apostasia shenz... [more]
K3YXY4_SETIT2.030e-4452.60ATP-dependent DNA helicase n=2 Tax=Setaria italica... [more]
K3YD59_SETIT8.370e-4452.60ATP-dependent DNA helicase n=2 Tax=Setaria italica... [more]
A0A8I7B9Y8_HORVV3.340e-4349.02ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare... [more]
A0A6S7PDI6_LACSI1.160e-4248.70ATP-dependent DNA helicase n=1 Tax=Lactuca saligna... [more]
Q65XV4_ORYSJ3.450e-4253.25ATP-dependent DNA helicase n=9 Tax=Oryza TaxID=452... [more]
A0A6D2INS2_9BRAS4.780e-4249.38ATP-dependent DNA helicase n=1 Tax=Microthlaspi er... [more]
UPI00087088B88.110e-4251.30ATP-dependent DNA helicase PIF1-like n=1 Tax=Pyrus... [more]
A0A8I6WTB4_HORVV9.960e-4249.35ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17111contigP-wetherbeei_contig17111:339..1131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4555.Si012162m
PFAMsHelitron_like_N,Herpes_Helicase,PIF1
Model size793
Max annot lvl35493|Streptophyta
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-44
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,37Q72@33090|Viridiplantae,3GCCF@35493|Streptophyta,3M3EP@4447|Liliopsida,3ITHE@38820|Poales
EC3.6.4.12
DescriptionBelongs to the helicase family
Cds size462
COG categoryD
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.3200336-UTR-P-wetherbeei_contig17111:338..5731683186108.3200336-UTR-P-wetherbeei_contig17111:338..573Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17111 339..573 +
1683186108.343558-UTR-P-wetherbeei_contig17111:1035..11311683186108.343558-UTR-P-wetherbeei_contig17111:1035..1131Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17111 1036..1131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.3322124-CDS-P-wetherbeei_contig17111:573..10351683186108.3322124-CDS-P-wetherbeei_contig17111:573..1035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17111 574..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17111.1.1prot_P-wetherbeei_contig17111.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17111 574..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17111.1.1

>prot_P-wetherbeei_contig17111.1.1 ID=prot_P-wetherbeei_contig17111.1.1|Name=mRNA_P-wetherbeei_contig17111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGT
NAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAV
GLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKE
ILT*
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mRNA from alignment at P-wetherbeei_contig17111:339..1131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17111.1.1 ID=mRNA_P-wetherbeei_contig17111.1.1|Name=mRNA_P-wetherbeei_contig17111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=793bp|location=Sequence derived from alignment at P-wetherbeei_contig17111:339..1131+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGTGGACGCAGTTTACGGCAACAATCCGGCGTGCTACAGCGACAACAT CTTCATGAGCGAACGCGCAATTCTGGCGCCGACAAACGCAATGACCGCAG AAATCAACCGACTTATGACCGATCGCATATCCGGTCCCGAACACACGTAC AACAGCGCCGACACCGTCTCCGACGACGACGACGCTCGCCATTTTCCCGT CGAACTCCTAAACTCGCTCACGCCTTCAGCCAGGCATGCCGCCGCACCGG CTTCAACTCAAGATCGGTACGCCGGTCATCCTGCTACGCAACCTCAACGC AAGCGGCGGACAGGCAAACGGCACGCGAGGCATCGTAAGTGCCATGCACC GGACCTTTGTGGAATGCGATATCACAACGGGCACTAACGCCGGAAGACGC GTTTACATTCCGCGCATCCTTTTTACCCCAGCTGACAGCGATCTCCCATT CACTCTTCGGCGAAGGCAGCTCCCGTTAGACATCGCGTGCAGCTTGACCA TCAACAAAGCCCAAGGTCAAACGTTAGCTGCCGTCGGCCTCTACCTTCAC ACTCAAGTCTTCACGCACGGCCAAGCTTACATTGCGTTCTCACGTGTCGG CGACCCCGCCGCTCTCACGGTGGCTTTACCAAATCGTTATCGAACACCGG AGGGAAATTACTTTGACAACATTGTTTACAAGGAAATCTTAACGTAAATA AAACGAAGTACCTCAAAAGCAAACTTCCAGGCGCCGAACGCCAGCCAACG AAAAATAACTAAAATCGACTGCTTTCAATGCAACCTCCCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17111:339..1131+

>mRNA_P-wetherbeei_contig17111.1.1 ID=mRNA_P-wetherbeei_contig17111.1.1|Name=mRNA_P-wetherbeei_contig17111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig17111:339..1131+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGCACCGGCTTCAACTCAAGATCGGTACGCCGGTCATCCTGCT
ACGCAACCTCAACGCAAGCGGCGGACAGGCAAACGGCACGCGAGGCATCG
TAAGTGCCATGCACCGGACCTTTGTGGAATGCGATATCACAACGGGCACT
AACGCCGGAAGACGCGTTTACATTCCGCGCATCCTTTTTACCCCAGCTGA
CAGCGATCTCCCATTCACTCTTCGGCGAAGGCAGCTCCCGTTAGACATCG
CGTGCAGCTTGACCATCAACAAAGCCCAAGGTCAAACGTTAGCTGCCGTC
GGCCTCTACCTTCACACTCAAGTCTTCACGCACGGCCAAGCTTACATTGC
GTTCTCACGTGTCGGCGACCCCGCCGCTCTCACGGTGGCTTTACCAAATC
GTTATCGAACACCGGAGGGAAATTACTTTGACAACATTGTTTACAAGGAA
ATCTTAACGTAA
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