mRNA_P-wetherbeei_contig17105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A833XDW1_JUGRE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Juglans regia TaxID=51240 RepID=A0A833XDW1_JUGRE) HSP 1 Score: 127 bits (320), Expect = 7.720e-33 Identity = 64/124 (51.61%), Postives = 83/124 (66.94%), Query Frame = 1
Query: 1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
PG IG KWV+KTK + +IER+KARLVA+G++ + GLDY E T +PV + TT+R +LA AA+ NW +HQ+DV A+L LDE VYM PP G T R +L KS+YGLKQ+ NW
Sbjct: 21 PGKKLIGCKWVFKTKLKADGSIERYKARLVAKGYTQVEGLDYHE--TFAPVAKMTTVRCLLAIAAKKNWIIHQLDVNNAFLHGDLDEEVYMIPPPGYC--TQGETRVCRLRKSLYGLKQASRNW 140
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A6P5TY53_PRUAV (uncharacterized protein LOC110771896 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TY53_PRUAV) HSP 1 Score: 125 bits (315), Expect = 3.200e-32 Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
P + +GSKW+YK K P+ ++ R+KARLV GFS GLDY+E T SPVVRHTT+R VLAHA + +W +HQ+DVK A+L L E VYM P G ++ KL KS+YGLKQ+ W
Sbjct: 21 PNRNIVGSKWIYKVKKNPDGSVSRYKARLVVEGFSEEQGLDYNE--TFSPVVRHTTVRLVLAHATKNHWELHQLDVKNAFLHGDLQEEVYMKQPQG-FEDAIHPSHICKLLKSLYGLKQAPRAW 141
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A7D9JQ57_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JQ57_PARCT) HSP 1 Score: 120 bits (301), Expect = 1.490e-31 Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 1
Query: 4 GAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQV-KLNKSIYGLKQSGNNW 372
G +G +WVY KT P+ E +KAR VA+G+S IPG+DY E T SP R +++R +L A + + VHQMDVKTAYL AP+D +++ P G R NG R V KLNKS+YGLKQSG NW
Sbjct: 7 GREVVGREWVYTVKTGPDKA-ETYKARYVAKGYSQIPGIDYHE--TFSPTARMSSIRILLQQAIQNDMLVHQMDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNW 127
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: UPI000870AF23 (uncharacterized protein LOC108867573 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000870AF23) HSP 1 Score: 117 bits (294), Expect = 6.970e-31 Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNN 369
PG IG KWVYK K N TIER+K+RLVA+G++ G+DY E T SP+ + TTLR +L A+ W +HQ+DV+ A+L L E+VYM+PP G R N I LNKS+YGLKQ+ N
Sbjct: 74 PGHKLIGCKWVYKIKYKSNGTIERYKSRLVAKGYTQNEGVDYQE--TFSPIAKLTTLRCLLTVASARYWYIHQLDVQNAFLHGDLHEVVYMTPPPGLRRQGENII--CWLNKSLYGLKQASRN 192
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE) HSP 1 Score: 120 bits (300), Expect = 6.290e-30 Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGI--RQVKLNKSIYGLKQSGNNW 372
PG IGSKWV+K K + + T+ER+KARLVA+GF+ PG+DY+E T+SPV+ +R + A NW +HQMDVKTAYL L E +YM P G + G + +L +S+YGLKQSG +W
Sbjct: 65 PGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEE--TYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDG-----ITGAEGKVCRLLRSLYGLKQSGRSW 183
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A151UAG0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UAG0_CAJCA) HSP 1 Score: 119 bits (297), Expect = 6.810e-30 Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 16 IGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
+GSKWV++TK ++TIER KARLVA+GF+ IPG DY S+T SPVV+ TT+R +L+ A W +HQ+DVK A+L L EIVYM P G P +LNK++YGLKQ+ W
Sbjct: 43 VGSKWVFRTKHKSDSTIERLKARLVAQGFTQIPGFDY--SLTFSPVVKATTIRLILSLAVLNGWPLHQLDVKNAFLHGHLTEIVYMEQPPGFVDPRFP-THVCRLNKALYGLKQAPRAW 158
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: UPI0018F81626 (uncharacterized protein LOC120001529 isoform X1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F81626) HSP 1 Score: 122 bits (306), Expect = 7.430e-30 Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 4 GAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
G IG KW+Y+ K P+ +IER+KARLVARGFS + G+DYDE T +PV + TT+R +LA AA + W + QMDVK A+L L EIVYM PP G P + R L ++IYGLKQ+ W
Sbjct: 376 GVRPIGCKWIYRVKRRPDGSIERYKARLVARGFSQVHGIDYDE--TFAPVAQMTTIRTLLAVAAVSRWPLLQMDVKNAFLNGDLSEIVYMQPPPGLRTPPQHVCR---LRRAIYGLKQAPRAW 493
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: UPI000870B18F (uncharacterized protein LOC103957791 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000870B18F) HSP 1 Score: 122 bits (306), Expect = 7.510e-30 Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 1
Query: 1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
PG IGSKWVYK K + +IER+K RLVA+G++ I GLDY E T +P+ + TT+R +L AA+ +W +HQ+DV+ A+L LDE V+MSPP G R N + +L+KS+YGLKQ+ + W
Sbjct: 473 PGKRVIGSKWVYKIKHRSDGSIERYKVRLVAKGYTQIEGLDYSE--TFAPMAKLTTVRCLLVVAAQRHWPLHQLDVQNAFLHGDLDEEVFMSPPPGLRRQGENLV--CRLHKSLYGLKQASSQW 592
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A6S7KHG6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KHG6_PARCT) HSP 1 Score: 119 bits (297), Expect = 1.360e-29 Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQV-KLNKSIYGLKQSGNNW 372
P +G KWVY K+ PN+ E +KAR +A+G+S +PG+DY E T +P R +++R ++ HA + + VHQMDVK AYL AP+D +++ P G + NG + V KLNKS+YGLKQSG NW
Sbjct: 237 PNREIVGGKWVYTIKSGPNDE-ETYKARYIAKGYSQVPGVDYHE--TFAPTARMSSIRVLMQHAVQNDMIVHQMDVKAAYLNAPIDCDIFVEQPKGYEKEGGNGKKLVCKLNKSLYGLKQSGRNW 358
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 121 bits (304), Expect = 1.400e-29 Identity = 62/123 (50.41%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 4 GAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
G + +GSKWV+K KT N ++R+KARLVA+G++ G+DY E SPVVR+TT+R++LA + NW VHQMDVKTA+L+ L+E +YM P G + KL KSIYGLKQS W
Sbjct: 850 GKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSE--VFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPN-HVCKLKKSIYGLKQSARCW 969 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17105.1.1 >prot_P-wetherbeei_contig17105.1.1 ID=prot_P-wetherbeei_contig17105.1.1|Name=mRNA_P-wetherbeei_contig17105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp MTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTback to top mRNA from alignment at P-wetherbeei_contig17105:488..859- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17105.1.1 ID=mRNA_P-wetherbeei_contig17105.1.1|Name=mRNA_P-wetherbeei_contig17105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig17105:488..859- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17105:488..859- >mRNA_P-wetherbeei_contig17105.1.1 ID=mRNA_P-wetherbeei_contig17105.1.1|Name=mRNA_P-wetherbeei_contig17105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig17105:488..859- (Phaeothamnion wetherbeei SAG_119_79)back to top |