mRNA_P-wetherbeei_contig171.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig171.1.1
Unique NamemRNA_P-wetherbeei_contig171.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig171.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig171contigP-wetherbeei_contig171:1116..3756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1911
Hectar predicted targeting categoryother localisation
Exons3
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.5167744-UTR-P-wetherbeei_contig171:1115..19631683186107.5167744-UTR-P-wetherbeei_contig171:1115..1963Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig171 1116..1963 -
1683186107.5710433-UTR-P-wetherbeei_contig171:3578..37561683186107.5710433-UTR-P-wetherbeei_contig171:3578..3756Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig171 3579..3756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.5288243-CDS-P-wetherbeei_contig171:1963..26471683186107.5288243-CDS-P-wetherbeei_contig171:1963..2647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig171 1964..2647 -
1683186107.5496633-CDS-P-wetherbeei_contig171:3040..32381683186107.5496633-CDS-P-wetherbeei_contig171:3040..3238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig171 3041..3238 -
1683186107.5612001-CDS-P-wetherbeei_contig171:3575..35781683186107.5612001-CDS-P-wetherbeei_contig171:3575..3578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig171 3576..3578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig171.1.1prot_P-wetherbeei_contig171.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig171 1964..3578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig171.1.1

>prot_P-wetherbeei_contig171.1.1 ID=prot_P-wetherbeei_contig171.1.1|Name=mRNA_P-wetherbeei_contig171.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=295bp
MECVLSADAKAEYDFALTLLRNATVAHRCRNGWVPPAGPKLVGRGDVAAA
YRLAHGTGPSWINEAVEVVNESRDLAVETAPDGRVFLRLSDEAFALQPLP
AGCMARAASWAFLARNAGLLAALAVVLAALLAADAWRRRRYRRRCLEELF
THEAYRCLLTHAKAAPGQPYPVAHIQDYVLDNVADRAAAAAVSAGAGGVA
DGGGGGAAGGDGVFAGVAWLSRMRRRRKQRLLAEAWPAVEARVGEDSRVR
LAHQTHRGQYNTPCWEWTAHGADPAHAPLAVLPRSPRLFFLHAN*
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mRNA from alignment at P-wetherbeei_contig171:1116..3756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig171.1.1 ID=mRNA_P-wetherbeei_contig171.1.1|Name=mRNA_P-wetherbeei_contig171.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2641bp|location=Sequence derived from alignment at P-wetherbeei_contig171:1116..3756- (Phaeothamnion wetherbeei SAG_119_79)
GGCCGAGGCGGCGGCAGCAGTGGCGGCGGTCAGCGACGCTGAGGAGCCGG
CGCCGCCGCCGCAGCCGCCGCTGCCGCGGCCGGACTGCCGGGAGTGGCGG
CCATGCCCGCGCTTCGGCACGTGCGTGAACGGGCGGCTGCTGCAGTGTGA
AACGCCGTTCGAGATCTCAGGGGACGGGATGGTGAGTCCGTTTAAACTTG
CTTGCTTGCTGCCTCTCTGAAACAAGTACTGACGATGGCTCGTGCGACTT
CGCGCAGCGGTCACTGGTTTTCGAAAGTCGCCAGTTCGGTTTCTGTTTCT
CCGGTTTCCGAGAGAAACGTTTTTTATGAACGAGCCGGGTTCTCTCTGTC
GGTCTCATACAGCTAACAGTCCAGCTATCGATATATCTCCCCTCTTTTGC
TGCGCATCGTTTGTTCGCGGCGATTTTTCACGACGGCGGCTTACCAACGG
CGACGGTTTACCAACTGTGGTGTCGGCTCATCAAATCAACGGCGGCTTGC
CGGCGGCGGCAACTACAGGAGTGCGTGCTGTCGGCGGACGCCAAGGCGGA
GTACGACTTCGCGCTGACGCTGCTGCGCAACGCGACGGTGGCGCACCGCT
GCCGCAACGGGTGGGTGCCGCCGGCGGGCCCCAAGCTGGTGGGGCGTGGC
GACGTCGCAGCCGCATACCGGCTGGCACACGGCACCGGCCCCTCGTGGAT
TAACGAGGCTGTTGAGGTGCGCGAACGATATCGGTCCGTTTCTTTGCGGT
AAAAATGGGGAAGTGGGGCACTTCTTCTCTTTGCAATCTGCCGTCTTTTC
TGTAATTACAATGTATTTACCTTCAAGCTTCCAATTCTTGCTTTCCTACT
GCCAGCCTATCTACCTTGGCTCTTTTTGGTTCCTGCGTTCAGGGTATCGA
GGCGGAACTGTCAGCGAACGAGTCGTAGCAAAGTGGATCGAAGGCAGCTT
TTTCGCTTAAACGTACAATTTCGCAGCCTTGAAAGCTTTCCCGTCCGGGC
GCATCTCCTGCTCCTCTGCTGGCTTGTCGTACATCTTCCTCTTCTTTCTT
TGGGCCGTTTTGGCTTTTTTGTAATCGTGCAACGAACGAATGCATATCAA
CATCTTCAGGTCGTAAACGAGTCGCGCGACCTGGCGGTGGAGACGGCGCC
CGACGGGCGCGTTTTCCTGCGCCTCTCGGACGAGGCGTTCGCCCTTCAGC
CGCTGCCGGCGGGATGCATGGCGCGGGCGGCCTCCTGGGCGTTCCTGGCG
CGCAATGCTGGGCTGCTGGCGGCGCTGGCAGTGGTGCTGGCAGCGTTGCT
GGCCGCCGACGCCTGGCGGCGCCGCCGCTACCGACGCCGCTGCCTCGAGG
AGCTCTTTACGCACGAGGCTTACCGCTGCCTGCTGACGCACGCCAAGGCG
GCGCCGGGACAGCCGTACCCGGTCGCACACATCCAGGATTATGTGCTGGA
CAACGTCGCCGACCGCGCGGCGGCCGCCGCTGTCAGCGCCGGAGCCGGCG
GTGTTGCCGACGGTGGCGGTGGAGGCGCGGCGGGCGGCGATGGCGTGTTC
GCGGGGGTGGCGTGGCTGTCGCGGATGCGGCGCCGGCGCAAGCAGCGGCT
GCTGGCGGAGGCGTGGCCGGCGGTGGAGGCGCGCGTCGGGGAGGACAGCC
GCGTGCGGCTCGCCCACCAGACGCACCGTGGGCAGTACAACACGCCATGC
TGGGAGTGGACGGCGCACGGCGCCGACCCTGCGCATGCTCCGCTGGCGGT
GTTGCCGCGGTCCCCGCGCCTGTTTTTCCTGCATGCCAACTAGGGCGACA
ACCGCGATTGCACCTGCGGCGCGGGCGTTACCGCACCTGCGGCGGCCCGT
GTTGCCGCACCGGCGGCGGCCGGCGTTACCGCACCGGCGACGGCCGGCGT
TACCGCACCGCGGTGGTAACTGCAGCCATGGCTGGCCGGGAGGTGCTAGG
ATGGCCAATGCTCCGTCCTGAGCCCGCTGGAAGTTGAGCCGGCGTGTGAA
CGGGCGGCGAGCGGCAGGGAGGCGGGCAGCGGGAGCGAAGGGAGATGGGC
AAGCCGACCGTGGCTGCAAGTGGCAGGGACAGCGGGCGGCGGAGATGGAA
CGTGGTGCCCTGCAGCCGCTAATACTGCCAATCCCCACCGTTGATGGGAA
AGGCCAATGGCGTGGTGGCGGTGGCGGCAGCGCTAGCTGGAAGGCCAGCG
GCGGTCTTGCTGGGTCCGATCAGACCGCCATCATGTATTGCGCCGACGCA
CGTGCGACAGGGCTGTGCCGCAAGCTTACGTCTCTCGCTGCCGCAAGGAT
AAGGAGGGGCGGGTTCGCGGCCTTGAAAAAAGTTCGGAGGCAGGGAAAGG
GGCTGTGCGAGGCATCTCTGCCGGAAGCGACGGCGGAAGGAGGAAAAGAT
TCGAGAGAAGTGGGGGGAACTTCCTGGTGGATGATTAGAAGAGACTTCAG
GCCTCCATGGGTTTGGGGGTTTTTGGTGCTATGGTAGACGAAAGGGGGAT
CCTTGGCCGGTGGCTGCGTTTCTGCTGACATCAGTGAAGGTATAACGCCC
GAGGTGCGCCGCATGCGAGATTGCAATTCGCAAAAGGCATGACAAGCGAC
GGCTTCTGCAGCAATAAGATGACAACCAATCGCTTTCTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig171:1116..3756-

>mRNA_P-wetherbeei_contig171.1.1 ID=mRNA_P-wetherbeei_contig171.1.1|Name=mRNA_P-wetherbeei_contig171.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig171:1116..3756- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTGCGTGCTGTCGGCGGACGCCAAGGCGGAGTACGACTTCGCGCT
GACGCTGCTGCGCAACGCGACGGTGGCGCACCGCTGCCGCAACGGGTGGG
TGCCGCCGGCGGGCCCCAAGCTGGTGGGGCGTGGCGACGTCGCAGCCGCA
TACCGGCTGGCACACGGCACCGGCCCCTCGTGGATTAACGAGGCTGTTGA
GGTCGTAAACGAGTCGCGCGACCTGGCGGTGGAGACGGCGCCCGACGGGC
GCGTTTTCCTGCGCCTCTCGGACGAGGCGTTCGCCCTTCAGCCGCTGCCG
GCGGGATGCATGGCGCGGGCGGCCTCCTGGGCGTTCCTGGCGCGCAATGC
TGGGCTGCTGGCGGCGCTGGCAGTGGTGCTGGCAGCGTTGCTGGCCGCCG
ACGCCTGGCGGCGCCGCCGCTACCGACGCCGCTGCCTCGAGGAGCTCTTT
ACGCACGAGGCTTACCGCTGCCTGCTGACGCACGCCAAGGCGGCGCCGGG
ACAGCCGTACCCGGTCGCACACATCCAGGATTATGTGCTGGACAACGTCG
CCGACCGCGCGGCGGCCGCCGCTGTCAGCGCCGGAGCCGGCGGTGTTGCC
GACGGTGGCGGTGGAGGCGCGGCGGGCGGCGATGGCGTGTTCGCGGGGGT
GGCGTGGCTGTCGCGGATGCGGCGCCGGCGCAAGCAGCGGCTGCTGGCGG
AGGCGTGGCCGGCGGTGGAGGCGCGCGTCGGGGAGGACAGCCGCGTGCGG
CTCGCCCACCAGACGCACCGTGGGCAGTACAACACGCCATGCTGGGAGTG
GACGGCGCACGGCGCCGACCCTGCGCATGCTCCGCTGGCGGTGTTGCCGC
GGTCCCCGCGCCTGTTTTTCCTGCATGCCAACTAG
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