mRNA_P-wetherbeei_contig17087.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17087.1.1
Unique NamemRNA_P-wetherbeei_contig17087.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17087contigP-wetherbeei_contig17087:287..940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1057002.KB905370_gene1560
PFAMsPhage_capsid
Model size654
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000167
EggNOG OGsCOG4653@1|root,COG4653@2|Bacteria,1Q3BS@1224|Proteobacteria,2TW86@28211|Alphaproteobacteria,4BHPD@82115|Rhizobiaceae
DescriptionPhage capsid family
Cds size654
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.3047438-CDS-P-wetherbeei_contig17087:286..9401683186107.3047438-CDS-P-wetherbeei_contig17087:286..940Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17087 287..940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17087.1.1prot_P-wetherbeei_contig17087.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17087 287..940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17087.1.1

>prot_P-wetherbeei_contig17087.1.1 ID=prot_P-wetherbeei_contig17087.1.1|Name=mRNA_P-wetherbeei_contig17087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
VASGHTAAQGAIKAIGTLDFDEASLVSRKAIAIVILTRSLMDEPDFPRQP
VENELRRAATTAQDAEMVAALSALYTPIASGDDAREDVATILTTLGTTAS
SKVVYFLGKAVWAQYQAMSESERPAALKGVAYALDGIASTTIVAIDATAV
VFRLDTIILRETRGDVQLSDAPTPGATTLTSLWQNGCVGLVCERELKFSV
TRDNSCVILTGADWSAP*
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mRNA from alignment at P-wetherbeei_contig17087:287..940-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17087.1.1 ID=mRNA_P-wetherbeei_contig17087.1.1|Name=mRNA_P-wetherbeei_contig17087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig17087:287..940- (Phaeothamnion wetherbeei SAG_119_79)
GTTGCCTCAGGGCATACCGCCGCGCAAGGTGCGATCAAGGCCATCGGCAC
GCTCGATTTCGATGAGGCTTCGCTCGTGTCGCGCAAGGCCATTGCTATCG
TAATCCTGACGCGCTCGCTCATGGACGAACCCGACTTCCCGCGTCAGCCC
GTGGAAAATGAACTGCGGCGCGCGGCCACCACTGCCCAAGACGCGGAAAT
GGTCGCCGCGCTCAGCGCTCTGTATACGCCTATTGCGAGCGGAGACGATG
CCCGTGAGGACGTGGCGACGATCCTGACGACACTCGGCACCACTGCATCG
TCCAAAGTCGTGTACTTCCTCGGCAAGGCGGTGTGGGCGCAATATCAGGC
CATGTCCGAGAGTGAGCGCCCTGCCGCATTGAAGGGAGTCGCCTACGCGC
TCGACGGAATCGCTTCGACCACCATCGTTGCAATCGACGCGACCGCCGTG
GTGTTCCGCCTCGACACGATCATACTCCGCGAGACGCGCGGCGACGTGCA
GTTGAGCGACGCGCCGACGCCCGGTGCCACGACGCTTACCTCGCTCTGGC
AAAACGGATGCGTCGGTCTTGTGTGCGAGCGGGAACTGAAGTTCTCGGTC
ACTCGCGACAACTCTTGCGTGATCCTGACGGGCGCGGATTGGAGCGCCCC
GTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17087:287..940-

>mRNA_P-wetherbeei_contig17087.1.1 ID=mRNA_P-wetherbeei_contig17087.1.1|Name=mRNA_P-wetherbeei_contig17087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig17087:287..940- (Phaeothamnion wetherbeei SAG_119_79)
GTTGCCTCAGGGCATACCGCCGCGCAAGGTGCGATCAAGGCCATCGGCAC
GCTCGATTTCGATGAGGCTTCGCTCGTGTCGCGCAAGGCCATTGCTATCG
TAATCCTGACGCGCTCGCTCATGGACGAACCCGACTTCCCGCGTCAGCCC
GTGGAAAATGAACTGCGGCGCGCGGCCACCACTGCCCAAGACGCGGAAAT
GGTCGCCGCGCTCAGCGCTCTGTATACGCCTATTGCGAGCGGAGACGATG
CCCGTGAGGACGTGGCGACGATCCTGACGACACTCGGCACCACTGCATCG
TCCAAAGTCGTGTACTTCCTCGGCAAGGCGGTGTGGGCGCAATATCAGGC
CATGTCCGAGAGTGAGCGCCCTGCCGCATTGAAGGGAGTCGCCTACGCGC
TCGACGGAATCGCTTCGACCACCATCGTTGCAATCGACGCGACCGCCGTG
GTGTTCCGCCTCGACACGATCATACTCCGCGAGACGCGCGGCGACGTGCA
GTTGAGCGACGCGCCGACGCCCGGTGCCACGACGCTTACCTCGCTCTGGC
AAAACGGATGCGTCGGTCTTGTGTGCGAGCGGGAACTGAAGTTCTCGGTC
ACTCGCGACAACTCTTGCGTGATCCTGACGGGCGCGGATTGGAGCGCCCC
GTGA
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