mRNA_P-wetherbeei_contig17083.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17083.1.1
Unique NamemRNA_P-wetherbeei_contig17083.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: A0A388KGX9_CHABU (DUF155 domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KGX9_CHABU)

HSP 1 Score: 88.6 bits (218), Expect = 4.840e-19
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELAN 174
            EFEL  RF  L+FKLN+IQHN +FFLD+L N+KSD LEW II+LI GEICLGL E+ N
Sbjct:  466 EFELDERFESLDFKLNIIQHNVRFFLDILQNRKSDTLEWIIILLITGEICLGLYEIFN 523
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: A0A835YQ30_9STRA (DUF155 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ30_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.300e-18
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELANYHP 183
            E+EL  RF  LE+KLNLIQ NTKFFL++LHNQKSD LEWTII+LI  EI + L ++A+ +P
Sbjct:  481 EYELKDRFSHLEWKLNLIQRNTKFFLEILHNQKSDNLEWTIIILIAFEIIVSLADMADANP 541
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: D8R027_SELML (DUF155 domain-containing protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R027_SELML)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELAN 174
            +FEL  RF  LEFK+ +IQHN KFFLD+L N+KSD LEW II LI GEIC+G+ ++ N
Sbjct:  225 DFELDDRFESLEFKIGIIQHNVKFFLDILQNRKSDTLEWIIIFLIAGEICVGVYDILN 282
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: D8SZV7_SELML (DUF155 domain-containing protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SZV7_SELML)

HSP 1 Score: 83.2 bits (204), Expect = 1.130e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELAN 174
            +FEL  RF  LEFK+ +IQHN KFFLD+L N+KSD LEW II LI GEIC+G+ ++ N
Sbjct:  225 DFELDDRFESLEFKIGIIQHNVKFFLDILQNRKSDTLEWIIIFLIAGEICVGVYDILN 282
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: D7G0L7_ECTSI (DUF155 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.940e-17
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELANYHPF 186
            EFE+  R R +E KL+++Q NT FF+++LHNQKS  LEWTIIVLI  EI +G+C+L N  PF
Sbjct:  492 EFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLLNVKPF 553
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: A0A7S3NK34_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK34_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.110e-17
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELANYHPF 186
            EFE+  RF  +EFKLNL+Q NTKFFL++L NQKS+ LEW IIVLI  EI +G C+L    PF
Sbjct:  413 EFEVEDRFEKIEFKLNLVQLNTKFFLEILANQKSNTLEWIIIVLISLEIVVGTCDLCGIQPF 474
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: A0A7S3Y0X5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0X5_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-16
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELANYHP 183
            EF+L  RF +LE KL LIQ+NTKFFL++LHN KS  LEW II+LI  EI + LC++  Y P
Sbjct:  338 EFDLETRFANLEVKLGLIQNNTKFFLEILHNAKSTSLEWIIIILILAEIIVALCDMFGYKP 398
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: A0A7S2G731_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G731_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.780e-16
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELANYHP 183
            EFE+  RF +L+FKLNLIQ NTKFFL+++HNQKS+ LEW IIVLI  EI L   +L ++ P
Sbjct:  296 EFEVDQRFENLKFKLNLIQDNTKFFLEIMHNQKSNMLEWVIIVLISAEIVLCSMDLCDFKP 356
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BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: A0A7R9Y2E8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y2E8_9VIRI)

HSP 1 Score: 75.9 bits (185), Expect = 3.730e-16
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCELAN 174
            EF LV RF  L+FKLNLIQH  KFFLDVL N+KSD LEW IIVLI  EI + L ++  
Sbjct:   70 EFMLVDRFETLDFKLNLIQHQVKFFLDVLQNRKSDSLEWIIIVLISCEIVVALYDILT 127
[Close]
BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Match: A0A2K1J4Y1_PHYPA (DUF155 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J4Y1_PHYPA)

HSP 1 Score: 80.1 bits (196), Expect = 4.740e-16
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEICLGLCEL 168
            +FEL  RF  L+FKLN+IQHN +FFL++L N+KSD LEW II+LI GEIC+G+ ++
Sbjct:  454 DFELDERFESLDFKLNIIQHNVRFFLEILQNRKSDTLEWIIILLITGEICVGVYQI 509
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17083.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A388KGX9_CHABU4.840e-1968.97DUF155 domain-containing protein n=2 Tax=Chara bra... [more]
A0A835YQ30_9STRA3.300e-1863.93DUF155 domain-containing protein n=1 Tax=Tribonema... [more]
D8R027_SELML1.120e-1762.07DUF155 domain-containing protein (Fragment) n=2 Ta... [more]
D8SZV7_SELML1.130e-1762.07DUF155 domain-containing protein (Fragment) n=2 Ta... [more]
D7G0L7_ECTSI3.940e-1758.06DUF155 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S3NK34_9STRA7.110e-1761.29Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3Y0X5_HETAK1.680e-1659.02Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2G731_9STRA1.780e-1660.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9Y2E8_9VIRI3.730e-1663.79Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A2K1J4Y1_PHYPA4.740e-1660.71DUF155 domain-containing protein n=2 Tax=Physcomit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17083contigP-wetherbeei_contig17083:980..1171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0L7
Preferred nameRMD1
PFAMsDUF155
Model size192
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0016020,GO:0031090,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:0098852,GO:0140053
Exons1
Evalue6.46e-18
EggNOG OGsCOG1723@1|root,KOG2861@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF155
Ec32 orthologEc-06_007250.1
Descriptionpositive regulation of mitochondrial translation
Cds size192
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.278416-CDS-P-wetherbeei_contig17083:979..11711683186107.278416-CDS-P-wetherbeei_contig17083:979..1171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17083 980..1171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17083.1.1prot_P-wetherbeei_contig17083.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17083 980..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17083.1.1

>prot_P-wetherbeei_contig17083.1.1 ID=prot_P-wetherbeei_contig17083.1.1|Name=mRNA_P-wetherbeei_contig17083.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
EFELVPRFRDLEFKLNLIQHNTKFFLDVLHNQKSDKLEWTIIVLICGEIC
LGLCELANYHPFG*
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mRNA from alignment at P-wetherbeei_contig17083:980..1171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17083.1.1 ID=mRNA_P-wetherbeei_contig17083.1.1|Name=mRNA_P-wetherbeei_contig17083.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig17083:980..1171- (Phaeothamnion wetherbeei SAG_119_79)
GAGTTTGAGCTAGTGCCGCGGTTTCGCGATCTCGAGTTCAAGCTCAACCT
GATTCAACACAACACCAAGTTCTTCCTGGACGTGCTCCACAACCAGAAGT
CCGACAAACTGGAATGGACCATTATAGTTCTGATCTGCGGCGAGATTTGT
CTGGGCCTCTGCGAGCTGGCCAACTACCACCCGTTCGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17083:980..1171-

>mRNA_P-wetherbeei_contig17083.1.1 ID=mRNA_P-wetherbeei_contig17083.1.1|Name=mRNA_P-wetherbeei_contig17083.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig17083:980..1171- (Phaeothamnion wetherbeei SAG_119_79)
GAGTTTGAGCTAGTGCCGCGGTTTCGCGATCTCGAGTTCAAGCTCAACCT
GATTCAACACAACACCAAGTTCTTCCTGGACGTGCTCCACAACCAGAAGT
CCGACAAACTGGAATGGACCATTATAGTTCTGATCTGCGGCGAGATTTGT
CTGGGCCTCTGCGAGCTGGCCAACTACCACCCGTTCGGGTGA
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