mRNA_P-wetherbeei_contig17080.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17080.1.1
Unique NamemRNA_P-wetherbeei_contig17080.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: A0A6C2D7F0_9RHOO (Efflux RND transporter permease subunit n=6 Tax=Betaproteobacteria TaxID=28216 RepID=A0A6C2D7F0_9RHOO)

HSP 1 Score: 492 bits (1267), Expect = 1.250e-160
Identity = 255/485 (52.58%), Postives = 336/485 (69.28%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYAT-SEGDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANGGHAL--HATDTKPQQIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRLIP 1446
            G+LVD AIVV+ENI+R YA   + DK   TV+A NE+G+PTNLAT AV+ VF SL +V+GM G YF+P+ F+VPVAM  SLL AY + PWAA RWL      GH L  H T  +  + Y  L+ PL+D    RR   ++ AL +  +     WQF+RP G+  P +++ +   +MPKDD NTFNIT  LPE TPVE T R+A E+   LR++P ++DYQ ++G  GV DF+GLLRG  +++GPH+GE+RVNL DK +R   S DIVR LRP +QAIAAR+PGST+QL+EDPPGPP R T+LAEIYG DP ++  ++  V+  F   YDM EVTDT   D+YQHR+ VDR+KAALSG++ A  A AL+ L  G  +GRAH+  E+NPVPIRL  PR + + P  + R+S+ N  G R+ LSE+ +      D PIL K+ E V+FVGGEL+ ++P+YAVL+LD+RLDG  +ADG RLVTGN+R  P
Sbjct:  418 GLLVDAAIVVIENIHRRYARLGQEDKARATVQAVNEIGSPTNLATLAVMLVFGSLLIVSGMTGQYFYPVAFNVPVAMAASLLVAYAVVPWAANRWL--KPGEGHDLEDHDTGDRLHRFYHALMAPLVDRPPRRRGVFLLAALAIVLSLFQAAWQFVRPAGLSGPQAWFGVEMAMMPKDDKNTFNITFDLPETTPVETTDRLAREIGALLRQNPDVSDYQSWIGQAGVIDFNGLLRGAGSKQGPHVGEVRVNLRDKTARDKTSIDIVRELRPAVQAIAARFPGSTVQLVEDPPGPPVRATVLAEIYGTDPQQLRALSGQVKAAFGQTYDMVEVTDTEVEDVYQHRLTVDREKAALSGLTVAEVAVALRRLIDGEALGRAHVQGEKNPVPIRLQIPRSHQIDPELLTRVSLTNRQGQRVPLSELVQVAPARADRPILHKDGERVTFVGGELESTAPVYAVLDLDRRLDGLALADGSRLVTGNLRFKP 900          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: UPI0007852743 (efflux RND transporter permease subunit n=1 Tax=Cupriavidus pauculus TaxID=82633 RepID=UPI0007852743)

HSP 1 Score: 491 bits (1264), Expect = 3.840e-160
Identity = 248/485 (51.13%), Postives = 340/485 (70.10%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYAT-SEGDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANGGHAL--HATDTKPQQIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRLIP 1446
            G+LVD AIVV+ENI+RHY+   + +K  +TV+AANE+GNPTNLAT AV+ VF SL VV+GM G YF+P+ FSVPVAM  SLL AY + PWA  RWL      GH L  H    +  + Y  ++ PL+D  R R+   ++  L +A +   P WQF+RP G+  P +++ +   +MPKD+ NTFNIT+ +PE TP E+T R+A E+   LR++P + DYQ ++G  G+ DF+GLLRG   + GPH+GEIRVNL DK +R+  S DIVR LRP +QAIAAR+PGST+QL+EDPPGPP R T++AEIYG DP ++  ++A V+  F+  YDM EV D+   D+Y+HR++VDR+KAALSG++ A  A AL+ L  G  +GRAH+  E+NPVPIRL  PRR+ + PA + ++S+ N  G ++ LSE+ R +    D PI  K+ E VS+VGGEL+ ++P+YAVL+LD+RLDG  + DG  L TGN+RL P
Sbjct:  418 GLLVDAAIVVIENIHRHYSRLGDKNKCLVTVQAANEIGNPTNLATLAVMLVFGSLLVVSGMPGQYFYPVAFSVPVAMAASLLVAYSIVPWATNRWL--KPGEGHELEDHDAGDRLHRFYHAVMAPLVDSPRRRQRVFLLAGLAIALSLFQPAWQFVRPAGLSGPQAWFGVEMAMMPKDNKNTFNITIDMPETTPAEVTDRLAREIGALLRQNPYVRDYQSWIGEAGIIDFNGLLRGAGGKAGPHVGEIRVNLVDKAARSKTSIDIVRELRPAVQAIAARFPGSTVQLVEDPPGPPVRATVMAEIYGKDPQQLRALSAQVKAAFQQTYDMVEVNDSEGEDVYEHRLVVDREKAALSGITSAEVAVALRRLIDGEEMGRAHIRGEKNPVPIRLQIPRRHQIDPALLSQVSLTNRQGQQVPLSELVRVIPAWADRPIQHKDGERVSYVGGELETTAPVYAVLDLDRRLDGLALTDGSHLTTGNLRLNP 900          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: A0A349W7G1_9BURK (AcrB/AcrD/AcrF family protein n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A349W7G1_9BURK)

HSP 1 Score: 490 bits (1261), Expect = 9.960e-160
Identity = 257/485 (52.99%), Postives = 339/485 (69.90%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYAT-SEGDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANGGHAL--HATDTKPQQIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRLIP 1446
            G+LVD AIVV+ENI+R+Y+   + DKR +TV+A NE+GNPTNLAT AV+ VF SL VV+GM G YF+P+ F+VP+AM  SLL AY + PWAA RWL      GH L  H T  +  + YR ++ PL+D+ R RR+   + AL +A + L P WQF+RP G+  P S++ +   +MPKD+ NTFNITL LPE TPVE T R+  E+   LR+ P + DYQ ++G  GV DF+G+LRG  +++GPH+ EIRVNL DK  R+  S  IVR LRP +QA AAR+PGST+QL+EDPPGPP R T+LAEIYG D  ++  ++  V   F    DM EVTD+ P D+ QHR+ VDR+KAALSG+S A    AL+ L  G  +GRA +A E+NPVPIRL  PRR+ + PA + R+SV N  G ++ LSE+ R    L D PIL K+ E V++VGGEL+ ++P+YAVL+LD+RLDG  +ADG RL TGN+RL P
Sbjct:  418 GLLVDAAIVVIENIHRNYSRLGDKDKRLVTVQATNEIGNPTNLATLAVMLVFGSLLVVSGMPGQYFYPVAFNVPIAMAASLLVAYSVVPWAANRWL--KPGEGHDLEDHNTGDRLHRFYRAVMTPLVDQPRRRRIAFALAALAIALSLLQPAWQFLRPAGLSGPQSWFGVELAMMPKDNKNTFNITLDLPETTPVETTDRLLREVGTLLRQHPEVRDYQSWIGQAGVIDFNGMLRGAGSKQGPHVAEIRVNLRDKTERSMTSIAIVRELRPALQAAAARFPGSTVQLVEDPPGPPVRATVLAEIYGQDLQQLRSLSDQVNAAFRQTRDMVEVTDSEPQDVTQHRLTVDREKAALSGLSVAEVVVALRRLIDGEEMGRARIAGEKNPVPIRLQIPRRHQIDPALLARVSVTNRQGQQVPLSELVRVAPALADRPILHKDGERVTYVGGELESTAPVYAVLDLDRRLDGLLLADGSRLTTGNLRLNP 900          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: Q11Z83_POLSJ (Acriflavin resistance protein n=9 Tax=Burkholderiales TaxID=80840 RepID=Q11Z83_POLSJ)

HSP 1 Score: 489 bits (1259), Expect = 1.930e-159
Identity = 257/485 (52.99%), Postives = 343/485 (70.72%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYAT-SEGDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANGGHALHATDTKPQ--QIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRLIP 1446
            G+LVD AIVV+ENI+R+Y+   + DKR +TV+A NE+GNPTNLAT AV+ VF SL VV+GM G YF+P+ F+VPVAM  SLL AY + PWAA RWL +    GH L   DTK +  + YR L+ PL+D +R R +  ++  L +A + L P WQF+RP G+G P S++ +   +MPKDD NTFNITL +P   PVE T R A E+   LR++  + +YQ ++G  GV DF+GLLRG+ N++GPH+ EIRVNL +K  R+  S  IVR LRP +QA+AARYPGST+QL+EDPPGPP R T+LAEIYG D  ++  ++A V+  F+   DM EVTD+   D+YQ+R+ VDR+KAALSG+S A  A AL+ L  G  +GRA +A E+NPVPIRL  PRR+ + PA + R+SV N  G R+ LSE+ + V    D  I  K+ E V++VGGEL+ ++P+YAVL+LD+RLDG  +ADG RL TGN+RL P
Sbjct:  418 GLLVDGAIVVIENIHRNYSRLGKQDKRLVTVQATNEIGNPTNLATLAVMLVFGSLLVVSGMPGQYFYPVAFNVPVAMAASLLVAYAVVPWAANRWLKLGE--GHDLEDHDTKDRLHRFYRHLMSPLVDRSRSRWLAFLLAGLAIAVSLLQPAWQFVRPAGLGGPQSWFGVELAMMPKDDKNTFNITLDMPATAPVEATDRFAREVGALLRENAYVRNYQSWIGEAGVIDFNGLLRGSGNKQGPHVAEIRVNLLNKADRSKTSIAIVRELRPTLQAMAARYPGSTVQLVEDPPGPPVRATVLAEIYGKDLQQLRTLSAQVKAAFQQTRDMVEVTDSEAQDVYQYRLTVDREKAALSGLSVAEVAVALRRLIDGEEMGRARIAGEKNPVPIRLQIPRRHQIDPALLARVSVTNRQGQRVPLSEVVQVVPGAVDRTISHKDGERVTYVGGELESTAPVYAVLDLDRRLDGLLLADGSRLTTGNLRLNP 900          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: A0A7R7JC23_9GAMM (Multidrug transporter AcrB n=1 Tax=Thiohalobacter sp. COW1 TaxID=2795687 RepID=A0A7R7JC23_9GAMM)

HSP 1 Score: 489 bits (1258), Expect = 2.080e-159
Identity = 256/485 (52.78%), Postives = 334/485 (68.87%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYAT-SEGDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANGGHALHATDTKPQ--QIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRLIP 1446
            G+LVD AIVV+ENI+R Y      +K  +TV A NE+G+PTNLAT AVI VF SL VV+GM G YF+P+ F+VPVAM  SLL  Y + PWAA RWL      GH L   D++ +  + Y  L+ PL+D    RR    + AL +  +   P WQF+RP G+  P +++ +   +MPKD+ NTFNITL LP+  PVE T R+A E+   LR++P + DYQ ++G  GV DF+GLLRG  N++GPH+ EIRVNL DK +R   S +IVR LRP +QAIAARYPGST+QLLEDPPGPP R T+LAEIYG DP ++  ++A V+  F   YDM EV D+   D+Y+HR++VDR+KAALSG+S A  A AL+ L  G  +GRAH+  E+NPVPIRL  PRR+ ++P  + R+S+ N  G R+ LSE+ R    L D PIL K+ E VSFVGGEL  ++P+YAVL+LD+RLDG  + DG RL TGN+RL P
Sbjct:  418 GLLVDAAIVVIENIHRRYGRLGRAEKPRVTVDAVNEIGSPTNLATLAVILVFGSLLVVSGMPGQYFYPVAFNVPVAMAASLLVGYAVVPWAANRWL--KPGEGHDLEDHDSRDRLHRYYHVLMTPLVDSPSRRRAVFALAALAIMLSLFQPAWQFVRPAGLSGPQAWFGVEMAMMPKDNKNTFNITLDLPQTAPVETTDRLAREVGALLRQNPYVTDYQSWIGQAGVIDFNGLLRGAGNKQGPHVAEIRVNLQDKTTRRVSSIEIVRALRPAVQAIAARYPGSTVQLLEDPPGPPVRATVLAEIYGKDPQQLRALSAQVKAAFRQTYDMVEVNDSEGEDVYEHRLVVDREKAALSGLSVAEVAMALRRLIDGEELGRAHVQGEKNPVPIRLQIPRRHQIAPELLSRVSLTNRQGQRVPLSELVRVTPALADRPILRKDGERVSFVGGELASTAPLYAVLDLDRRLDGLLLDDGSRLTTGNLRLNP 900          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: UPI001CF8AB50 (efflux RND transporter permease subunit n=1 Tax=Ferribacterium limneticum TaxID=76259 RepID=UPI001CF8AB50)

HSP 1 Score: 473 bits (1216), Expect = 4.950e-153
Identity = 245/483 (50.72%), Postives = 333/483 (68.94%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYAT-SEGDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANGGHALHATDTKPQQIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRLIP 1446
            G+LVD AIVV+ENI+R YA   EGDK   TV+A NE+G+PTNLAT A+I VF SL VV GM+G YF+PI F+VPVAM  SLLAAY + PWAA RWL          H +  +  ++Y   + P++D  R+RR   +++ L +  + +   WQF+RP GVG  +++  +   +MPKDD NTFNIT+ LPE  P+E T R+A E+   LR++P + DYQ ++G  GV DF+GLLRG  N+ GP++ EIRVNL DK +R+  S D+VR LRP  QAIA R+PGST+Q +EDPPGPP R T++AEIYG D  ++ +++  V+ EF + YDM EVTD+   D+ Q+R+ VDR+KAALSG+S A  A AL+ L  G  +G AH+  E+N +PIRL  PRRY + P  + +IS+ N  G R+ LSE+ R +    D PIL K+ E V+FVGGEL+ ++P+YAVL+LD+RLDG  ++DG RL TGN+R  P
Sbjct:  418 GLLVDAAIVVIENIHRCYARLGEGDKLRTTVQAVNEIGSPTNLATLAIILVFGSLLVVGGMSGQYFYPIAFNVPVAMAASLLAAYAVVPWAAHRWLKPGEGHDLEAHNSQGRLHRLYHWGMAPIMDNPRHRRRAFMLVILAIILSLMQLAWQFVRPGGVGGGVAWLGVEMSMMPKDDKNTFNITMDLPETVPLETTDRLAREIGTLLRQNPYVRDYQSWIGGAGVIDFNGLLRGAGNKAGPYVAEIRVNLLDKMARSKTSIDMVRELRPAAQAIAKRFPGSTVQFVEDPPGPPVRATVMAEIYGKDLQQLRILSDKVKGEFANTYDMVEVTDSQMEDVPQYRLTVDREKAALSGLSVAEVAIALRRLIDGEELGHAHVLGEKNIIPIRLQIPRRYQIDPTMLSQISLSNRQGQRVPLSEVVRVIPASADRPILHKDGERVTFVGGELETTAPVYAVLDLDRRLDGLVLSDGSRLATGNLRFNP 900          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: UPI001AE16F0B (efflux RND transporter permease subunit n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001AE16F0B)

HSP 1 Score: 460 bits (1183), Expect = 4.270e-148
Identity = 241/487 (49.49%), Postives = 329/487 (67.56%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYATSEG--DKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWL---PVNANGGHALHATDTKP---QQIYRRLLMPLLDEARYR-RMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNM 1434
            G+LVD AIVV+ENI+RHY T++   DK+ +T+ A NE+GN TNLATFAV+ VF++L +VTGM GDYF+PI F+VP+AMG S++ AYI+ PWAA RWL    V     H   A+  +P   +++Y RL  PL      R   GLV++A++LA + +   WQF+RP GVG   S+  +  G +PKD+ NTFNI +++PENTPVE T R   E++  L K+P + +YQ +VG  GV DF+GL +G   R G H+ EIRVNL+DK+ R+  S DIVR  RP ++AI A YPG+ + L+EDPPGPP R T+LAE+YGPD   +  ++A VRK FE  YD  ++TDT P D+ +HR+  D++KAALS +S A  A AL  ++GG  + RAHLA+E+NPV +R   PRRYAV P +++R+ V N  G  + LSE+ R V T  D PI  ++NE V+FVG EL  + P YAVL+L +RL+     DG  L TGN+
Sbjct:  418 GLLVDAAIVVIENIHRHYGTAKAGADKQAITILATNEIGNATNLATFAVMLVFAALFLVTGMAGDYFYPIAFNVPIAMGASVVVAYIVTPWAANRWLHRHDVQEEDAHEQEASHGQPGRMERLYLRLFRPLQQSRSVRIGFGLVIVAMMLASS-MQGAWQFVRPSGVGGASSYLGVPIGFLPKDNKNTFNIVVSMPENTPVEQTDRFVREISVQLSKEPEVVNYQTWVGQAGVEDFNGLFKGTAGRTGNHVAEIRVNLTDKHHRSKSSIDIVREFRPKVEAIRAAYPGAKISLVEDPPGPPLRSTVLAELYGPDDEGLRTLSAQVRKAFEETYDTVDITDTEPVDVLEHRIEPDKEKAALSRISTAQIAEALILVYGGNTLSRAHLADERNPVAVRAFVPRRYAVDPTRLDRVFVNNSDGNPVPLSELVRIVPTAADRPIFHRDNEKVTFVGAELSSTVPFYAVLDLQKRLNAITAPDGQPLRTGNL 903          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: UPI0011295559 (efflux RND transporter permease subunit n=1 Tax=Paracoccus sp. FO-3 TaxID=1335059 RepID=UPI0011295559)

HSP 1 Score: 458 bits (1178), Expect = 2.240e-147
Identity = 237/488 (48.57%), Postives = 324/488 (66.39%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYATSEGD--KRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWL------PVNANGGHALHATDTKPQQIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRL 1440
            G+LVD AIVV+ENI+RHY +   D  K   TV A NE+GN TNLATFAV+ VF++L +VTGM GDYF+PI ++VP+AM  S++ AYI+ PW A RWL        +A+   A H    + +++Y RL+ PL D    R     ++ +L+  + +   WQF+RP GVG P+S   +  G +PKDD NTFNI +A+PE  PVE T R+  E+   L +D  + +YQ +VG   V+DF+GL +G   R G H+ EIRVNL+DK+ R   S DIVR +RP + AI   YPG+T+ L+EDPPGPP R T+LAEIYGPDP  + +++A VR+ F+  YDM +++DT P D+ +HR+I D++KAALSGVS A  A  L  ++GG V+ RAHL +E+N VP+R+  PRR+AV P +++RI V N+ G  + LSE+ R      D PI  ++NE V+FVGGEL  S P+YAVL+L  RLDG    DG  L TGN+ L
Sbjct:  417 GLLVDAAIVVIENIHRHYGSGRADIDKEQATVLATNEIGNATNLATFAVMLVFAALFMVTGMAGDYFYPIAYNVPIAMLASVVVAYIVTPWTANRWLHRHEVKESDAHAEEAKHGRHGRMERLYLRLIRPLQDRPTARLGFAALIVVLMTASVMQGAWQFVRPAGVGGPVSALGVNIGFLPKDDKNTFNIVIAMPETAPVEDTDRLVREIGTLLAEDHNVLNYQTWVGQASVADFNGLFKGTSERNGSHVAEIRVNLTDKHHRKRSSIDIVREMRPKVNAIRQGYPGATVLLVEDPPGPPLRSTVLAEIYGPDPEGLRMLSAQVREAFQETYDMVDISDTEPVDVSEHRIIPDKEKAALSGVSTAQIAQTLTMIYGGNVLSRAHLVDEKNAVPVRVFVPRRHAVDPERLDRIFVTNVAGQPVPLSELVRIEPGQSDRPIQRRDNEKVTFVGGELSDSVPLYAVLDLQNRLDGITAPDGRPLRTGNLGL 904          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: A0A256GCN6_9HYPH (AcrB/AcrD/AcrF family protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A256GCN6_9HYPH)

HSP 1 Score: 458 bits (1178), Expect = 2.340e-147
Identity = 242/487 (49.69%), Postives = 329/487 (67.56%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYAT--SEGDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLP---VNANGGHALHATDTKP---QQIYRRLLMPLLDEARYRRMGLVVL-ALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNM 1434
            G+LVD AIVV+ENI+RHY +  S   K   TV A NE+GN TNLATFAV+ VFS+L +V+GM GDYF+PI ++VP+AM  S++ AYI+ PWAA RWL    V     H    +  +P   ++ Y RL+ PL  E R  R+G  VL A+L  G+ +   WQF+RP GVG P+S++ +  G +PKD+ NTFNI +A+PE TPVE T R   E+   L KD  + +YQ +VG  G++DF+GL +G  NR G  + EIRVNL+DK+ R   S DIVR LRP ++ I  RYPG+   L+EDPPGPP R T+LAE+YGPDP  +  ++  VRK FE  YDM +++DT   D+ +HR++ D++KAALS +S A  A AL  ++GG  + RAHLA+E+NPVP+R+  PRRYAV PA+++R+ V N  G  + LSE+ + V +  D PI  ++NE V+FVGGEL  S P+YAVL+L +RL+G    DG  L TGN+
Sbjct:  418 GLLVDAAIVVIENIHRHYGSKQSRASKEKTTVLATNEIGNATNLATFAVMLVFSALFLVSGMAGDYFYPIAYNVPIAMAASVVVAYIVTPWAANRWLSRHTVQEADEHEQEESHGEPGRLEKFYLRLIAPL-QERRAARIGFAVLIAVLTTGSIMQGAWQFVRPSGVGGPVSWFGVNIGFLPKDNKNTFNIVIAMPETTPVEETDRFVREIGVLLSKDKNVVNYQGWVGQAGIADFNGLFKGTTNREGNSVAEIRVNLTDKHDRKESSIDIVRELRPKVEEIRRRYPGAEAALVEDPPGPPLRATVLAELYGPDPEGLRQLSTEVRKAFEETYDMVDLSDTESEDVTEHRIVPDKEKAALSKISTAQIAQALTIIYGGNELSRAHLADERNPVPVRVYVPRRYAVDPARLDRVFVDNADGKPVPLSELVKVVPSHADRPIQHRDNEKVTFVGGELSDSVPLYAVLDLQKRLNGITAPDGRPLRTGNL 903          
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Match: A0A2E5FBI8_9GAMM (Acriflavin resistance protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E5FBI8_9GAMM)

HSP 1 Score: 454 bits (1169), Expect = 4.010e-146
Identity = 242/481 (50.31%), Postives = 325/481 (67.57%), Query Frame = 1
Query:    1 GMLVDDAIVVLENINRHYATSE-GDKRTLTVRAANEVGNPTNLATFAVIAVFSSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANGGHALHATDTKPQQIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQFIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADELAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSDKNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEIYGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAALSGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQMERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSPIYAVLELDQRLDGREVADGHRLVTGNMRL 1440
            G+LVD AIVV+ENI+RHY      DK  +TV A NE+GNPTNLATFAV+ VF SL V+T M+G YF+PI F+VP+AM  SLL AYI+ PWAA RWL          H    K  Q Y  ++ PLLD  RYR + ++++ + +  + L P WQFIR +GVG PLS   +   +MPKD+ NTFN+T+ +PE TPVE+T R+  E+   LR+ P I +YQ +VG  GV DF+GLL+G  N++G  + E+RVNL+DK +R   S DI R+LRP M++I  RYPGS +Q++ED PGPP R T+LAEIYG DP K+  I+A V   F++ + + EV D+  AD+ Q RVIVD++KAALSGVS A  A AL+ L  G  +GR H+A E+  VPIRL  P +Y V P  +  I + N  G +I LSE+T+ V   +D PIL K+ E V++VG EL  ++P+ AV+++DQRLDG  + DG +L TGN+RL
Sbjct:  418 GLLVDSAIVVIENIHRHYKNLWLKDKVDVTVTATNEIGNPTNLATFAVMVVFGSLMVITEMSGQYFYPIAFNVPIAMLASLLVAYIVTPWAANRWLKPGEGEDLETHDGGDKLHQWYYNIITPLLDNRRYRYLSIMIIIIAIVLSMLQPAWQFIRAEGVGGPLSAGGVALVMMPKDNKNTFNVTIDMPEYTPVEVTDRVVREVGDVLRETPEILNYQSWVGQTGVIDFNGLLKGASNKKGSFVAEVRVNLTDKKTREISSIDIARQLRPTMESIQQRYPGSVIQVVEDLPGPPLRATVLAEIYGKDPEKLREISAKVSDVFKNTHGVIEVHDSEFADVPQFRVIVDKEKAALSGVSVAQVAQALRRLIDGGEMGRLHIAEEKKIVPIRLHIPYQYQVDPMLLSTIFITNREGKKIPLSELTQVVNDAQDRPILHKDFERVTYVGAELTDTTPVNAVMDIDQRLDGLSIGDGEKLTTGNLRL 898          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17080.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C2D7F0_9RHOO1.250e-16052.58Efflux RND transporter permease subunit n=6 Tax=Be... [more]
UPI00078527433.840e-16051.13efflux RND transporter permease subunit n=1 Tax=Cu... [more]
A0A349W7G1_9BURK9.960e-16052.99AcrB/AcrD/AcrF family protein n=1 Tax=Comamonadace... [more]
Q11Z83_POLSJ1.930e-15952.99Acriflavin resistance protein n=9 Tax=Burkholderia... [more]
A0A7R7JC23_9GAMM2.080e-15952.78Multidrug transporter AcrB n=1 Tax=Thiohalobacter ... [more]
UPI001CF8AB504.950e-15350.72efflux RND transporter permease subunit n=1 Tax=Fe... [more]
UPI001AE16F0B4.270e-14849.49efflux RND transporter permease subunit n=1 Tax=Az... [more]
UPI00112955592.240e-14748.57efflux RND transporter permease subunit n=1 Tax=Pa... [more]
A0A256GCN6_9HYPH2.340e-14749.69AcrB/AcrD/AcrF family protein n=2 Tax=Hyphomicrobi... [more]
A0A2E5FBI8_9GAMM4.010e-14650.31Acriflavin resistance protein n=2 Tax=Gammaproteob... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17080contigP-wetherbeei_contig17080:3..1448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog296591.Bpro_5560
PFAMsACR_tran
Model size1446
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.34e-159
EggNOG OGsCOG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2VI3F@28216|Betaproteobacteria,4ACE6@80864|Comamonadaceae
DescriptionBelongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Cds size1443
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.166547-UTR-P-wetherbeei_contig17080:2..51683186107.166547-UTR-P-wetherbeei_contig17080:2..5Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17080 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.179771-CDS-P-wetherbeei_contig17080:5..14481683186107.179771-CDS-P-wetherbeei_contig17080:5..1448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17080 6..1448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17080.1.1prot_P-wetherbeei_contig17080.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17080 6..1448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17080.1.1

>prot_P-wetherbeei_contig17080.1.1 ID=prot_P-wetherbeei_contig17080.1.1|Name=mRNA_P-wetherbeei_contig17080.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=481bp
MLVDDAIVVLENINRHYATSEGDKRTLTVRAANEVGNPTNLATFAVIAVF
SSLSVVTGMNGDYFHPIVFSVPVAMGVSLLAAYILAPWAALRWLPVNANG
GHALHATDTKPQQIYRRLLMPLLDEARYRRMGLVVLALLLAGTFLLPVWQ
FIRPQGVGAPLSFWAMTFGLMPKDDTNTFNITLALPENTPVEITGRMADE
LAGALRKDPLIADYQIYVGMPGVSDFSGLLRGNYNRRGPHLGEIRVNLSD
KNSRTPISNDIVRRLRPPMQAIAARYPGSTLQLLEDPPGPPSRITILAEI
YGPDPHKVNVIAAMVRKEFESIYDMAEVTDTIPADIYQHRVIVDRDKAAL
SGVSPASAATALQTLFGGAVIGRAHLANEQNPVPIRLMAPRRYAVSPAQM
ERISVPNITGARIALSEITRTVATLEDTPILTKNNEYVSFVGGELDHSSP
IYAVLELDQRLDGREVADGHRLVTGNMRLIP
back to top

mRNA from alignment at P-wetherbeei_contig17080:3..1448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17080.1.1 ID=mRNA_P-wetherbeei_contig17080.1.1|Name=mRNA_P-wetherbeei_contig17080.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1446bp|location=Sequence derived from alignment at P-wetherbeei_contig17080:3..1448+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATGCTGGTGGATGACGCCATTGTCGTGCTGGAAAATATCAACCGGCA TTACGCCACCAGCGAAGGCGACAAGCGCACCCTGACGGTGCGGGCCGCCA ATGAGGTTGGCAATCCGACCAATCTCGCCACCTTTGCCGTGATCGCCGTG TTTTCATCGCTGAGCGTCGTGACGGGAATGAACGGCGATTATTTCCATCC CATCGTATTCAGCGTTCCGGTTGCGATGGGGGTGTCTTTGCTGGCGGCCT ATATATTGGCGCCATGGGCGGCGCTGCGATGGTTGCCGGTCAACGCAAAT GGGGGGCATGCCCTGCACGCCACAGATACAAAACCGCAGCAGATTTACCG CCGCCTGTTGATGCCGCTGCTGGATGAAGCCCGCTACCGCCGCATGGGGC TGGTTGTGCTGGCGCTGCTGCTTGCCGGGACGTTTCTGTTGCCGGTCTGG CAATTCATCCGCCCACAAGGTGTTGGCGCGCCGCTTTCCTTCTGGGCCAT GACATTTGGCCTGATGCCCAAGGATGACACCAACACCTTCAACATTACTT TGGCGTTGCCGGAAAATACGCCGGTTGAGATTACCGGACGCATGGCTGAC GAACTTGCCGGTGCGTTGCGCAAGGATCCGCTGATTGCGGATTACCAGAT CTATGTGGGCATGCCGGGGGTTTCTGATTTTAGCGGCCTGTTGCGTGGCA ACTATAACCGGCGCGGCCCGCATCTGGGCGAGATACGGGTCAATCTGTCA GACAAGAACTCCCGAACGCCTATATCGAACGATATTGTCCGCCGTTTGCG TCCGCCTATGCAGGCCATTGCGGCGCGCTATCCGGGAAGCACCCTGCAAC TGCTGGAAGACCCGCCGGGACCGCCGTCGCGCATCACCATTCTGGCCGAA ATTTATGGCCCCGACCCGCACAAGGTGAACGTGATCGCCGCCATGGTGCG CAAAGAGTTTGAAAGCATCTATGACATGGCCGAAGTCACAGACACGATCC CTGCTGATATATATCAGCACCGGGTGATTGTAGACCGCGACAAGGCGGCG CTTTCGGGTGTCAGCCCGGCTTCCGCCGCCACTGCCCTGCAAACCCTGTT TGGCGGCGCCGTAATTGGCCGCGCGCATCTTGCGAACGAGCAGAATCCGG TGCCGATCCGGCTGATGGCGCCACGTCGTTATGCGGTTTCTCCCGCGCAA ATGGAACGGATTTCGGTTCCCAATATCACTGGCGCACGTATCGCCTTGTC CGAGATCACGCGCACCGTCGCCACACTGGAAGACACCCCGATCCTGACCA AGAACAACGAGTATGTGAGCTTTGTCGGTGGCGAACTGGATCATTCTTCG CCGATCTATGCCGTGCTGGAACTGGACCAGCGGCTGGATGGACGCGAAGT TGCAGATGGCCACAGGCTTGTCACGGGAAATATGCGGCTTATCCCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17080:3..1448+

>mRNA_P-wetherbeei_contig17080.1.1 ID=mRNA_P-wetherbeei_contig17080.1.1|Name=mRNA_P-wetherbeei_contig17080.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1443bp|location=Sequence derived from alignment at P-wetherbeei_contig17080:3..1448+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGTGGATGACGCCATTGTCGTGCTGGAAAATATCAACCGGCATTA
CGCCACCAGCGAAGGCGACAAGCGCACCCTGACGGTGCGGGCCGCCAATG
AGGTTGGCAATCCGACCAATCTCGCCACCTTTGCCGTGATCGCCGTGTTT
TCATCGCTGAGCGTCGTGACGGGAATGAACGGCGATTATTTCCATCCCAT
CGTATTCAGCGTTCCGGTTGCGATGGGGGTGTCTTTGCTGGCGGCCTATA
TATTGGCGCCATGGGCGGCGCTGCGATGGTTGCCGGTCAACGCAAATGGG
GGGCATGCCCTGCACGCCACAGATACAAAACCGCAGCAGATTTACCGCCG
CCTGTTGATGCCGCTGCTGGATGAAGCCCGCTACCGCCGCATGGGGCTGG
TTGTGCTGGCGCTGCTGCTTGCCGGGACGTTTCTGTTGCCGGTCTGGCAA
TTCATCCGCCCACAAGGTGTTGGCGCGCCGCTTTCCTTCTGGGCCATGAC
ATTTGGCCTGATGCCCAAGGATGACACCAACACCTTCAACATTACTTTGG
CGTTGCCGGAAAATACGCCGGTTGAGATTACCGGACGCATGGCTGACGAA
CTTGCCGGTGCGTTGCGCAAGGATCCGCTGATTGCGGATTACCAGATCTA
TGTGGGCATGCCGGGGGTTTCTGATTTTAGCGGCCTGTTGCGTGGCAACT
ATAACCGGCGCGGCCCGCATCTGGGCGAGATACGGGTCAATCTGTCAGAC
AAGAACTCCCGAACGCCTATATCGAACGATATTGTCCGCCGTTTGCGTCC
GCCTATGCAGGCCATTGCGGCGCGCTATCCGGGAAGCACCCTGCAACTGC
TGGAAGACCCGCCGGGACCGCCGTCGCGCATCACCATTCTGGCCGAAATT
TATGGCCCCGACCCGCACAAGGTGAACGTGATCGCCGCCATGGTGCGCAA
AGAGTTTGAAAGCATCTATGACATGGCCGAAGTCACAGACACGATCCCTG
CTGATATATATCAGCACCGGGTGATTGTAGACCGCGACAAGGCGGCGCTT
TCGGGTGTCAGCCCGGCTTCCGCCGCCACTGCCCTGCAAACCCTGTTTGG
CGGCGCCGTAATTGGCCGCGCGCATCTTGCGAACGAGCAGAATCCGGTGC
CGATCCGGCTGATGGCGCCACGTCGTTATGCGGTTTCTCCCGCGCAAATG
GAACGGATTTCGGTTCCCAATATCACTGGCGCACGTATCGCCTTGTCCGA
GATCACGCGCACCGTCGCCACACTGGAAGACACCCCGATCCTGACCAAGA
ACAACGAGTATGTGAGCTTTGTCGGTGGCGAACTGGATCATTCTTCGCCG
ATCTATGCCGTGCTGGAACTGGACCAGCGGCTGGATGGACGCGAAGTTGC
AGATGGCCACAGGCTTGTCACGGGAAATATGCGGCTTATCCCT
back to top