prot_P-wetherbeei_contig17078.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig17078.1.1
Unique Nameprot_P-wetherbeei_contig17078.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length256
Homology
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.890e-27
Identity = 66/152 (43.42%), Postives = 87/152 (57.24%), Query Frame = 0
Query:    7 GKTAQYMFCGEDVLEIQVLRP-DAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCR----DRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDR 153
            G+  ++M  G+++LE+QV RP +  + AS+ IDQ VQ DGA+  A+RVDP  LLLP LA+HA RW PL Q +A  GC +LR  R    D+L                              CDVNDR+GPD+LL R N++  LAWL AKV+R
Sbjct:    7 GEATKFMMVGDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKL------------------------------CDVNDRMGPDDLLIRINEESVLAWLTAKVER 128          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.850e-24
Identity = 71/164 (43.29%), Postives = 86/164 (52.44%), Query Frame = 0
Query:    1 MSHPRTGKTAQYMFCGE-------DVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLG---FCDVNDRLGPDELLYRANDDKTLAWLRAKVDRV 154
            M+HPRTG+  +++           DVLE+QV R     F S+ + Q VQSDGA+++ATRVDPALLLLP +     RW PL Q L  A  A L  CR                              LG    CDVNDRLGPD +LYR N+ K LAWL +KVDRV
Sbjct:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRH-----------------------------LGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRV 135          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.610e-20
Identity = 72/206 (34.95%), Postives = 103/206 (50.00%), Query Frame = 0
Query:    1 MSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHA-LRWSPLDQILAAAG----CAALRPCR----DRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDRVLFVLAAQAAA----CATAAGAVSRAGGGDAPGSASFAGALQCG 193
            + HPR+G+  +YM  G+D+LE+Q  +    +++S+ ID  V+SD  L+V TRVDP LLLLP LA  A  R+ PLDQ ++++        L  CR    D++                              CDVND+LGP+ +LYR N+ K + WL+ KV+R    LA         C  A  + S A G  AP + + AGA   G
Sbjct:   47 LKHPRSGELLKYMAAGQDILELQ--KVSVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKI------------------------------CDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHLARVEPRADDPCGGAGDSASFAAGFQAPRTDASAGAADSG 220          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.170e-19
Identity = 68/168 (40.48%), Postives = 86/168 (51.19%), Query Frame = 0
Query:    2 SHPRTGKTAQYMFCGEDVL-EIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEH-ALRWSPLDQILAA---AGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDRVLFVLAAQAAA 164
            +HPR G  +QY+      L E+Q  RP   +F S+ ++QRV SDG L+VA+ VDP L+LLP L +H A R+SPL Q+LAA       ALR C+                                 CDVND+LG D LLYR N +KT+ WL  KV R    L A  AA
Sbjct:   46 THPRGGYPSQYLLSPAGQLCELQSFRPSGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQG--------------------------LDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVALEAA 187          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A2B4SSH9_STYPI (Ribonuclease H2 subunit B n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSH9_STYPI)

HSP 1 Score: 68.9 bits (167), Expect = 5.900e-10
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 0
Query:    3 HPRTGKTAQYMFC--GEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDEL-LYRANDDKTLAWLRAKVDR 153
            HPRTG   Q++    GE + E+     +     S+ I+  VQ DG+LFV T VDP  L+LP+L +++ ++  LDQ+L                                          L  CDV    G D+L ++R N+DKT AWL+AKV++
Sbjct:   44 HPRTGNNQQFLLTHSGEKIFEVLKFTEEP---RSWFIEDSVQKDGSLFVITPVDPLFLVLPYLTKYSQKFRTLDQLL----------------------LDDEHPPICRLTGCLSSDEILNICDVK---GDDDLQVFRLNNDKTTAWLKAKVEQ 169          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A2P6U1T4_CHLSO (Ribonuclease H2 subunit B n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1T4_CHLSO)

HSP 1 Score: 65.5 bits (158), Expect = 6.830e-9
Identity = 52/153 (33.99%), Postives = 71/153 (46.41%), Query Frame = 0
Query:    4 PRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALR---WSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDR 153
            P+TG+ A Y+  G  + EI   +    Q++S+ I +RVQ DG LF+AT VDP LL+LP L +   +   +  L+QIL+ A      P    LA                             CD     G  +  YR NDD+ LAWLR KVD+
Sbjct:   30 PKTGQAAAYLLAGSCLQEINWFKQ---QYSSWFIGERVQQDGGLFLATPVDPLLLVLPLLEQARAQQNVFQDLEQILSMAAS----PSAHLLA-----------------PLLEQGGQLSCLCDAKAAGG--QSYYRLNDDRVLAWLRLKVDQ 156          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: UPI0018D6D685 (ribonuclease H2 subunit B-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6D685)

HSP 1 Score: 65.1 bits (157), Expect = 1.380e-8
Identity = 53/158 (33.54%), Postives = 77/158 (48.73%), Query Frame = 0
Query:    1 MSHPRTGKTAQYMFC--GEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHL--AEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDRV 154
            + HP+T K+A +MF   G  VLE+   +    +  S+ ID+ VQ DG+L +AT +DP  L+LP+L  AE + ++  LDQIL  A      P   RLA  +  +                       C  + R   D   YR + DK L WL+AKV+R+
Sbjct:   55 LKHPKTEKSAMFMFSSDGSTVLELLSFKE---KHRSWFIDESVQEDGSLMMATPIDPLFLILPYLVKAEKSGKYITLDQILDDADY----PQCHRLARCSGASHLH--------------------CISSVRGASDVQAYRYDSDKALDWLKAKVERL 185          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A023F7A5_TRIIF (Ribonuclease H2 subunit B (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023F7A5_TRIIF)

HSP 1 Score: 63.9 bits (154), Expect = 2.210e-8
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 0
Query:    1 MSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDEL-LYRANDDKTLAWLRAKVDRVLFVL 158
            + HP+TG+ A Y    + V E+           SY ID  V SDG L++++ +DP  L+LP+L + A   SPLDQIL         P  +RL      N                         ++DR G +EL  Y  N+DKTLAWL+ K+DR++ VL
Sbjct:   16 LRHPKTGEGA-YFIVNKKVHEVLKFSDSK---RSYFIDDNVTSDGDLYISSPIDPLFLILPYLTK-AKHCSPLDQILIDEDY----PEIERLLNCEEINQLHL---------------------ISDRKGDEELNAYIYNEDKTLAWLQKKLDRIVDVL 144          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: V3Z6L0_LOTGI (Ribonuclease H2 subunit B n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3Z6L0_LOTGI)

HSP 1 Score: 61.6 bits (148), Expect = 1.950e-7
Identity = 47/160 (29.38%), Postives = 76/160 (47.50%), Query Frame = 0
Query:    1 MSHPRTGKTAQYMFC--GEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEH--ALRWSPLDQILAA---AGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDEL-LYRANDDKTLAWLRAKVD 152
            + HP+T + + Y+F   G+D+ E+   + +   F S+LIDQ VQ DG + + + VDP  L+LP+L +     ++  LDQI+     + C  L+ C+                                   V D  G D+   YR N++KT++WL+AKVD
Sbjct:   47 LRHPKTDEGSYYLFSPDGKDIYEVIKYKEE---FRSWLIDQTVQQDGGIVITSPVDPVFLVLPYLIQKDKCSKFMTLDQIVVDEKFSECRRLQECQG----------------------------LEELHQVADIKGDDDFKAYRYNEEKTMSWLKAKVD 175          
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: UPI001966779D (ribonuclease H2 subunit B isoform X3 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001966779D)

HSP 1 Score: 60.8 bits (146), Expect = 2.870e-7
Identity = 47/165 (28.48%), Postives = 71/165 (43.03%), Query Frame = 0
Query:    1 MSHPRTGKTAQYMFCGE--DVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHAL--RWSPLDQIL---AAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDRVLFVL 158
            + HP+T   + Y+   E  +V E++       ++ S+ I Q VQ DG L   TR+DP  LLLP+ ++     ++ P++Q++   A  GC  L  C   L                           L        +G  +L YR N DKTL WL+ KVD  +  L
Sbjct:   33 LRHPKTDNVSLYLLSNEASEVFEVKAFNE---RYHSWFIGQSVQHDGRLLFLTRMDPVFLLLPYFSKFGKEGKFQPVEQVVVDEAFPGCIQLLKCSQTL-------------------------QCLSHVTEKKEVG-SQLFYRYNKDKTLTWLKKKVDNTVKAL 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK3_ECTSI1.890e-2743.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS23_9STRA1.850e-2443.29Ribonuclease H2, subunit B n=1 Tax=Tribonema minus... [more]
A0A7S2XY24_9STRA7.610e-2034.95Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japon... [more]
A0A4D9DAM5_9STRA3.170e-1940.48Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis ... [more]
A0A2B4SSH9_STYPI5.900e-1031.17Ribonuclease H2 subunit B n=1 Tax=Stylophora pisti... [more]
A0A2P6U1T4_CHLSO6.830e-933.99Ribonuclease H2 subunit B n=1 Tax=Chlorella soroki... [more]
UPI0018D6D6851.380e-833.54ribonuclease H2 subunit B-like n=1 Tax=Patiria min... [more]
A0A023F7A5_TRIIF2.210e-833.96Ribonuclease H2 subunit B (Fragment) n=1 Tax=Triat... [more]
V3Z6L0_LOTGI1.950e-729.38Ribonuclease H2 subunit B n=1 Tax=Lottia gigantea ... [more]
UPI001966779D2.870e-728.48ribonuclease H2 subunit B isoform X3 n=1 Tax=Polyp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041195Rnh202, triple barrel domainPFAMPF17745Ydr279_Ncoord: 2..54
e-value: 3.7E-7
score: 30.3
NoneNo IPR availableGENE3D2.20.25.530coord: 1..51
e-value: 1.2E-8
score: 36.9
NoneNo IPR availableGENE3D1.10.20.120coord: 122..187
e-value: 3.1E-6
score: 29.3
IPR040456Ribonuclease H2 subunit BPANTHERPTHR13383RIBONUCLEASE H2 SUBUNIT Bcoord: 2..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17078contigP-wetherbeei_contig17078:278..1397 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17078.1.1mRNA_P-wetherbeei_contig17078.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig17078 260..1397 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig17078.1.1 ID=prot_P-wetherbeei_contig17078.1.1|Name=mRNA_P-wetherbeei_contig17078.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
MSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVA
TRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNG
SRAGETGSGEGSGGGGGGGLGFCDVNDRLGPDELLYRANDDKTLAWLRAK
VDRVLFVLAAQAAACATAAGAVSRAGGGDAPGSASFAGALQCGLPPPQPQ
PAPASTVVPAGAGAPAAGAAAAGGLANAKENYSRSELVAAVGLVAEYLNA
AWGERL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041195Rnh202_N
IPR040456RNase_H2_suB