mRNA_P-wetherbeei_contig17059.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17059.1.1
Unique NamemRNA_P-wetherbeei_contig17059.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17059.1.1 vs. uniprot
Match: A0A7X8XL73_9BURK (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XL73_9BURK)

HSP 1 Score: 249 bits (635), Expect = 3.700e-75
Identity = 147/386 (38.08%), Postives = 227/386 (58.81%), Query Frame = 1
Query:   70 KVPMVLKKLETRYNISGSMPTMTIPGTHAARDLADLVAIEQKYFPGACVTAGFYDWRTTSQYRSHAGLHLGYDIAMPYGCKFGAGWPGVVTAIAVWSGEEHGITVQSPDGTTVTYGHVSPRVTVGQQIVAGQPLGVIARDHVDVKMRDAAGNYQDYGGTGRVLPAPTWAAATWAPVAPSRETLMAEWLMASNNYDMAKQELDQFVHTNSQRKLEREQLLRRLPALKKSVAMMAQYVDQGLVARVTVEENRDELEKAKERLKKLDKDVSQDSGQLKTLQANVSAAQERLNTAKSQARTIGLSFGDVERFVNATINNDTSLRKNVEAYKRAAATKNASQLAKVESDLRENEKSLKSLEELYEIGGVAKNDLASAREKHRMLMSHMRAL 1227
            +VP V+  L TR+ ++      T  G  A  D+  LVA+++   P A +T+GFYDWRT S+YR + GLHLGYDIAMP G    AGWPG V ++A W+  E G+TV+S  GT VTYGH+ P ++ G  +  G  +G I+ DHVDVKMRD+AGNY D+GG         +AA      A SRE  M  WL+A N+ + ++ EL+      +   LER +L  R   L+++V +MA+YV++GLV+R   E+ R +L    + L +L K   +   ++  L+  V AA+ RL   + +AR  G+++ +V  FVN  +  D  LR  V  YKR        ++ ++  ++R   ++L  LE LYE+GG+ + ++ +ARE+ ++L + +++L
Sbjct:   31 QVPAVIDALRTRFGVTD---LSTSEGKVA--DITGLVALQRTLCPEAVLTSGFYDWRTVSRYRRNPGLHLGYDIAMPAGTPVRAGWPGTVVSVAPWTEGEWGLTVRSASGTEVTYGHIRPSLSAGDPVQVGTIVGTISIDHVDVKMRDSAGNYVDFGGQASASATTPFAAFA----ADSREAQMVTWLVARNSLETSESELEGRRREKASAALERRRLESRRVELEQAVPLMARYVEEGLVSRAEAEKTRSDLATTLQALARLKKRQKEAPERIAELENQVRAARSRLAVVERRARQRGITWAEVTGFVNGVVARDARLRDQVLDYKRDKQETRTRRVGELRQEVRAGRQNLAELENLYEMGGLPRREIEAARERQQILEAELKSL 407          
BLAST of mRNA_P-wetherbeei_contig17059.1.1 vs. uniprot
Match: A0A355TR23_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TR23_9BACT)

HSP 1 Score: 225 bits (574), Expect = 6.180e-66
Identity = 149/412 (36.17%), Postives = 227/412 (55.10%), Query Frame = 1
Query:   10 AMLAGTLLATAATAQEIPNRK-VPMVLKKLETRYNISGSMPTMTIPGTHAA---RDLADLVAIEQKYFPGACVTAGFYDWRTTSQYRSHAGLHLGYDIAMPYGCKFGAGWPGVVTAIAVWSGEEHGITVQSPDGTTVTYGHVSPRVTVGQQIVAGQPLGVIARDHVDVKMRDAAGNYQDYGGTGRVLPAPTWAAATWAPVAPSRETLMAEWLMASNNYDMAKQELDQFVHTNSQRKLEREQLLRRLPALKKSVAMMAQYVDQGLVARVTVEENRDELEKAKERLKKLDKDVSQDSGQLKTLQANVSAAQERLNTAKSQARTIGLSFGDVERFVNATINNDTSLRKNVEAYKRAAATKNASQLAKVESDLRENEKSLKSLEELYEIGGVAKNDLASAREKHRMLMSHMRALRA 1233
            A+LA     +AA A++ P+   VP V+K  + +Y     MP+ T P   A      L DLV ++++    ACVT+ FYD+R+ S YR  AGLHLGYDIAM  G    AGWPG V +IA W+  E G+TV S +G  VTYGH+ P   +GQ I  G  +G IA +HVDVKMR A G Y  +G   +       A A       SRE LM  WL A NN +  K+E++     N   ++ER++L  R    + ++  M +Y + GLV+R  VE+ R         L K+     ++  ++K LQ  +    +R   A+ +A+  GLS+ DV+ FVN  +  D +L K V+ YK+        +L +V+S+L + E++L S EEL+E+GG+ + ++ + R++ + L   ++ L++
Sbjct:   16 AVLACLFSPSAALAEKKPSSAAVPEVIKAAQKKYG----MPSATKPTPAAVPQITSLTDLVNLQRQSCSWACVTSTFYDYRSVSMYRRRAGLHLGYDIAMQAGTAARAGWPGTVVSIAPWADGEWGVTVASSNGIEVTYGHIVPVARLGQVINVGDTVGTIAVNHVDVKMRGADGAYIPFGEKDKQA---VMAGALQVQPVTSREQLMVAWLSAYNNEETVKEEVEARARENKLDQIERKKLEERYTEKRLALRNMEKYFEDGLVSRREVEQTRXXXXXXXXDLLKVKTSQKENPSRIKKLQKQLDLCHKRTLKAQQEAQKRGLSWQDVQNFVNNLVAKDQNLSKTVKNYKKDKQDAYIQELLQVKSELSQCERTLSSQEELFEVGGLPQKEIDATRQRQKALQQRLKELQS 420          
BLAST of mRNA_P-wetherbeei_contig17059.1.1 vs. uniprot
Match: A0A1V5PNW2_9BACT (Peptidase family M23 n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PNW2_9BACT)

HSP 1 Score: 139 bits (351), Expect = 2.280e-33
Identity = 70/160 (43.75%), Postives = 99/160 (61.88%), Query Frame = 1
Query:   91 KLETRYNISGS----MPTMTIPG-------THAARDLADLVAIEQKYFPGACVTAGFYDWRTTSQYRSHAGLHLGYDIAMPYGCKFGAGWPGVVTAIAVWSGEEHGITVQSPDGTTVTYGHVSPRVTVGQQIVAGQPLGVIARDHVDVKMRDAAGNYQDY 537
            K++ + N++G+    +   TIP        T     L D + + +KYFP A +T  F +WR  S+YR+ AGLH GYDI +  G K  AGWPG+VTA+  W GEE+GITV S DG ++TYGHV P V VGQ++     + +   DHVD+KM+D+ GN+ D+
Sbjct:   49 KIKLKTNLAGARLKFLQLSTIPDHSTKITTTSTISPLMDYLNLTRKYFPAAEITGRFREWRNISKYRAQAGLHNGYDIYLEKGTKIPAGWPGIVTAVTPWYGEEYGITVLSHDGKSMTYGHVKPLVVVGQRVSRDYIIALCWSDHVDIKMKDSEGNFIDF 208          
BLAST of mRNA_P-wetherbeei_contig17059.1.1 vs. uniprot
Match: A0A7Z9PU69_9BACT (M23 family metallopeptidase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PU69_9BACT)

HSP 1 Score: 127 bits (318), Expect = 1.550e-30
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  154 AARDLADLVAIEQKYFPGACVTAGFYDWRTTSQYRSHAGLHLGYDIAMPYGCKFGAGWPGVVTAIAVWSGEEHGITVQSPDGTTVTYGHVSPRVTVGQQIVAGQPLGVIARDHVDVKMRDAAGNYQDY 537
            A  +L  L+  ++    GA V++GF+DWRT S+YRS AG+H GYDIAM  G +  A W G V AI+ W G E+G+TV+S  G   TYGH+SP V VG+ + +G  LG +  DHVDVK+RD  G+  D+
Sbjct:   16 AVAELERLLEFQKVGDTGAFVSSGFHDWRTVSKYRSRAGIHGGYDIAMLAGTEVRAAWSGEVVAISRWYGSEYGVTVRSSTGHEATYGHISPLVRVGEAVKSGDVLGTVVVDHVDVKVRDRFGSLVDF 143          
BLAST of mRNA_P-wetherbeei_contig17059.1.1 vs. uniprot
Match: A0A1V5PAJ0_9BACT (Peptidase family M23 n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PAJ0_9BACT)

HSP 1 Score: 126 bits (317), Expect = 1.710e-28
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query:  163 DLADLVAIEQKYFPGACVTAGFYDWRTTSQYRSHAGLHLGYDIAMPYGCKFGAGWPGVVTAIAVWSGEEHGITVQSPDGTTVTYGHVSPRVTVGQQIVAGQPLGVIARDHVDVKMRDAAGNYQDYG 540
            +L   + I +K +P A ++  FY+WR  S+YR  AGLH GYDIA+P G    AGW G V  I  W G+E+G+TV+S     VTYGH+ P V  GQ+I+ G  +G +  DHVD+KM+D+  NY D+G
Sbjct:   94 NLNQYMDIVKKIYPSAVISGTFYEWRDISKYRRVAGLHDGYDIALPSGTPVVAGWEGEVVDICPWYGQEYGVTVKSTGDIYVTYGHIVPMVKTGQKIMIGSIIGFVVIDHVDIKMKDSKNNYIDFG 219          
BLAST of mRNA_P-wetherbeei_contig17059.1.1 vs. uniprot
Match: A0A7Z9UDN3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UDN3_9BACT)

HSP 1 Score: 109 bits (272), Expect = 5.680e-25
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 1
Query:  166 LADLVAIEQKYFPGACVTAGFYDWRTTSQYRSHAGLHLGYDIAMPYGCKFGAGWPGVVTAIAVWSGEEHGITVQSPDGTTVTYGH 420
            L  L+ ++QK +P A +++ FYD+RTTS+YR  AGLHLGYDIA+P+G +   GWPG V AI  W+  E+G+TV S DGT VTYGH
Sbjct:   64 LGHLLGLQQKNWPAAWISSTFYDYRTTSKYRRQAGLHLGYDIALPFGARVSTGWPGRVVAIVPWTDTEYGVTVASADGTEVTYGH 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17059.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7X8XL73_9BURK3.700e-7538.08Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A355TR23_9BACT6.180e-6636.17Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A1V5PNW2_9BACT2.280e-3343.75Peptidase family M23 n=1 Tax=bacterium ADurb.Bin36... [more]
A0A7Z9PU69_9BACT1.550e-3048.44M23 family metallopeptidase n=1 Tax=Phycisphaerale... [more]
A0A1V5PAJ0_9BACT1.710e-2846.83Peptidase family M23 n=1 Tax=bacterium ADurb.Bin36... [more]
A0A7Z9UDN3_9BACT5.680e-2556.47Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17059contigP-wetherbeei_contig17059:136..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog477641.MODMU_1586
PFAMsPeptidase_M23
Model size1248
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.36e-05
EggNOG OGsCOG0739@1|root,COG0739@2|Bacteria,2GXEC@201174|Actinobacteria,4EW3Z@85013|Frankiales
DescriptionEvidence 2a Function of homologous gene experimentally demonstrated in an other organism
Cds size1236
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.429916-UTR-P-wetherbeei_contig17059:135..1471683186106.429916-UTR-P-wetherbeei_contig17059:135..147Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17059 136..147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.4395692-CDS-P-wetherbeei_contig17059:147..13831683186106.4395692-CDS-P-wetherbeei_contig17059:147..1383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17059 148..1383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17059.1.1prot_P-wetherbeei_contig17059.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17059 148..1383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17059.1.1

>prot_P-wetherbeei_contig17059.1.1 ID=prot_P-wetherbeei_contig17059.1.1|Name=mRNA_P-wetherbeei_contig17059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp
MLAGTLLATAATAQEIPNRKVPMVLKKLETRYNISGSMPTMTIPGTHAAR
DLADLVAIEQKYFPGACVTAGFYDWRTTSQYRSHAGLHLGYDIAMPYGCK
FGAGWPGVVTAIAVWSGEEHGITVQSPDGTTVTYGHVSPRVTVGQQIVAG
QPLGVIARDHVDVKMRDAAGNYQDYGGTGRVLPAPTWAAATWAPVAPSRE
TLMAEWLMASNNYDMAKQELDQFVHTNSQRKLEREQLLRRLPALKKSVAM
MAQYVDQGLVARVTVEENRDELEKAKERLKKLDKDVSQDSGQLKTLQANV
SAAQERLNTAKSQARTIGLSFGDVERFVNATINNDTSLRKNVEAYKRAAA
TKNASQLAKVESDLRENEKSLKSLEELYEIGGVAKNDLASAREKHRMLMS
HMRALRAQTQE*
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mRNA from alignment at P-wetherbeei_contig17059:136..1383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17059.1.1 ID=mRNA_P-wetherbeei_contig17059.1.1|Name=mRNA_P-wetherbeei_contig17059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1248bp|location=Sequence derived from alignment at P-wetherbeei_contig17059:136..1383+ (Phaeothamnion wetherbeei SAG_119_79)
ATAACTTTTGCCATGCTGGCTGGCACTCTGCTCGCCACCGCAGCAACCGC TCAAGAGATTCCCAATCGCAAAGTGCCCATGGTTCTTAAAAAGCTCGAGA CCCGCTACAACATCAGCGGCTCCATGCCTACGATGACCATCCCGGGCACG CACGCAGCCCGCGACCTGGCCGACCTTGTGGCTATCGAGCAAAAATACTT CCCCGGCGCCTGCGTCACCGCCGGTTTCTATGATTGGCGCACCACCTCAC AATATCGCAGCCACGCAGGCCTGCACCTCGGCTACGACATCGCGATGCCC TACGGCTGCAAATTCGGCGCGGGCTGGCCCGGCGTCGTGACCGCAATCGC GGTCTGGTCGGGTGAGGAGCACGGCATTACTGTCCAGTCTCCCGACGGGA CGACTGTGACCTACGGGCACGTATCCCCTCGCGTAACGGTAGGCCAGCAA ATTGTAGCGGGCCAGCCTCTCGGCGTCATCGCCCGCGACCATGTCGACGT GAAAATGCGTGACGCCGCCGGCAACTACCAGGACTACGGCGGCACCGGCC GGGTTCTTCCCGCTCCGACCTGGGCTGCAGCCACCTGGGCTCCCGTGGCG CCCAGCCGCGAGACCTTGATGGCCGAATGGCTGATGGCGTCCAACAATTA CGACATGGCCAAGCAAGAGCTCGACCAGTTCGTGCACACGAATTCACAGC GGAAGCTTGAGCGAGAACAGCTTCTGCGTCGTCTCCCGGCGCTCAAAAAG AGCGTTGCCATGATGGCTCAGTACGTTGACCAGGGCCTGGTTGCCCGTGT CACCGTCGAAGAGAATCGGGACGAGTTAGAAAAGGCCAAAGAGCGGCTCA AAAAGCTCGACAAGGACGTCAGCCAGGACAGTGGCCAGCTAAAAACGCTG CAGGCCAATGTGAGCGCGGCCCAGGAGCGCTTGAACACCGCCAAGAGTCA GGCGCGCACGATCGGTCTCTCCTTTGGCGACGTAGAGCGATTCGTAAATG CTACCATCAACAACGACACTTCTTTGCGAAAGAATGTCGAAGCCTACAAA CGCGCAGCTGCCACCAAGAACGCCAGCCAGCTAGCCAAAGTGGAGAGCGA TCTCCGCGAGAACGAGAAGTCTCTCAAATCCCTGGAAGAGCTCTACGAAA TCGGCGGCGTCGCCAAGAACGACCTGGCCAGCGCCCGTGAAAAGCACCGT ATGTTGATGAGCCACATGCGAGCTCTGCGCGCTCAAACGCAAGAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17059:136..1383+

>mRNA_P-wetherbeei_contig17059.1.1 ID=mRNA_P-wetherbeei_contig17059.1.1|Name=mRNA_P-wetherbeei_contig17059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig17059:136..1383+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCTGGCACTCTGCTCGCCACCGCAGCAACCGCTCAAGAGATTCC
CAATCGCAAAGTGCCCATGGTTCTTAAAAAGCTCGAGACCCGCTACAACA
TCAGCGGCTCCATGCCTACGATGACCATCCCGGGCACGCACGCAGCCCGC
GACCTGGCCGACCTTGTGGCTATCGAGCAAAAATACTTCCCCGGCGCCTG
CGTCACCGCCGGTTTCTATGATTGGCGCACCACCTCACAATATCGCAGCC
ACGCAGGCCTGCACCTCGGCTACGACATCGCGATGCCCTACGGCTGCAAA
TTCGGCGCGGGCTGGCCCGGCGTCGTGACCGCAATCGCGGTCTGGTCGGG
TGAGGAGCACGGCATTACTGTCCAGTCTCCCGACGGGACGACTGTGACCT
ACGGGCACGTATCCCCTCGCGTAACGGTAGGCCAGCAAATTGTAGCGGGC
CAGCCTCTCGGCGTCATCGCCCGCGACCATGTCGACGTGAAAATGCGTGA
CGCCGCCGGCAACTACCAGGACTACGGCGGCACCGGCCGGGTTCTTCCCG
CTCCGACCTGGGCTGCAGCCACCTGGGCTCCCGTGGCGCCCAGCCGCGAG
ACCTTGATGGCCGAATGGCTGATGGCGTCCAACAATTACGACATGGCCAA
GCAAGAGCTCGACCAGTTCGTGCACACGAATTCACAGCGGAAGCTTGAGC
GAGAACAGCTTCTGCGTCGTCTCCCGGCGCTCAAAAAGAGCGTTGCCATG
ATGGCTCAGTACGTTGACCAGGGCCTGGTTGCCCGTGTCACCGTCGAAGA
GAATCGGGACGAGTTAGAAAAGGCCAAAGAGCGGCTCAAAAAGCTCGACA
AGGACGTCAGCCAGGACAGTGGCCAGCTAAAAACGCTGCAGGCCAATGTG
AGCGCGGCCCAGGAGCGCTTGAACACCGCCAAGAGTCAGGCGCGCACGAT
CGGTCTCTCCTTTGGCGACGTAGAGCGATTCGTAAATGCTACCATCAACA
ACGACACTTCTTTGCGAAAGAATGTCGAAGCCTACAAACGCGCAGCTGCC
ACCAAGAACGCCAGCCAGCTAGCCAAAGTGGAGAGCGATCTCCGCGAGAA
CGAGAAGTCTCTCAAATCCCTGGAAGAGCTCTACGAAATCGGCGGCGTCG
CCAAGAACGACCTGGCCAGCGCCCGTGAAAAGCACCGTATGTTGATGAGC
CACATGCGAGCTCTGCGCGCTCAAACGCAAGAATAA
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