mRNA_P-wetherbeei_contig17044.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17044.1.1
Unique NamemRNA_P-wetherbeei_contig17044.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: UPI0019B72A8B (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019B72A8B)

HSP 1 Score: 159 bits (402), Expect = 1.760e-44
Identity = 105/259 (40.54%), Postives = 158/259 (61.00%), Query Frame = 1
Query:    7 MNKLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRS-FSAAPDPANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATLVPIFVLSFIFVTAL---PSLSPLLAVPF-FVAGIYIMRMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFATFLALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            M KLP  + + HALK+V  +R AG RIG  W+++L  + V +R  F +     NGTA+ +       + A +S + FSSIAV+WHR+IL DE+  +    RLD  V  Y+G +L+ +LA  VP+     +F TAL   P  + ++ +P    AG +I  +S+ LPA+AL+R DF    AL+  +GN  Q A + +LN +++F    AL ++L     V+ A A +  ++LS+P+NLF +LFSVS+L+SLYGFFVE+R F
Sbjct:    1 MRKLPPLKAVSHALKSVISYRMAGIRIGALWMVILFAVDVAERLLFPSGAGAGNGTATSI-----RWLSAIVSFLAFSSIAVSWHRFILRDELPLAANSLRLDARVLRYLGNSLLALLAGGVPLV----LFATALAFLPRAAAIVLLPAALTAGAFISMLSLKLPAVALDRSDFSFGDALKSAEGNFWQIATVFLLNAMVIFLPLTALVLLLR---QVSPAVASVTGLILSVPLNLFFTLFSVSVLTSLYGFFVEKRDF 247          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: A0A847ZV12_9HYPH (Uncharacterized protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZV12_9HYPH)

HSP 1 Score: 127 bits (320), Expect = 4.070e-32
Identity = 93/266 (34.96%), Postives = 144/266 (54.14%), Query Frame = 1
Query:    7 MNKLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSF----SAAPDPANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLAT---LVPIFVLSFIFVTALPSLSPLLAVPFFVAG-IYIM----RMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFATFLALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            M KLP      H L++          +  PW+LV+  +++    +    S +PD A+  A +       LVI  LS+  F+SIAV+WHRYILLDE+       R D  VW Y G T++I LA    L+P+ +L+ IF+  L +   + AVP ++A  +Y M    R+SV LPA+ALER+D  +  A   T+ N  Q   L +L  L   A  + +G+V  ++     +   ++++ + I +N  L++  V+LL+SLYGFF+EQR F
Sbjct:    1 MRKLPVGAAFGHVLQSTVNNLGFAWHLSWPWLLVILPLNLFAGIYGIGDSLSPDQASAGAVLT-----SLVIGLLSMFAFASIAVSWHRYILLDEVPKGWARLRADNTVWRYFGNTILIFLAIIAGLIPVAILAAIFLAVLGNFGAVFAVPLYLAAALYSMSAFYRLSVKLPAVALERQDIHMRDAWAATRDNTWQMIGLAMLFLLCAVALAIVIGLVSWLLAQSGASFLLLVSLAVQITLNWVLTIMGVTLLTSLYGFFIEQRDF 261          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: UPI001908A839 (hypothetical protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001908A839)

HSP 1 Score: 125 bits (313), Expect = 4.710e-31
Identity = 94/261 (36.02%), Postives = 140/261 (53.64%), Query Frame = 1
Query:   13 KLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSFSAAPDPANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATLVPIFVLSFIF--VTALPSL--SPLLAVPFF-----VAGIYIMRMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFATFLALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            KLP    I HA+ +V        RI  PW +V+  +++I     +A    + T +        ++   L    F+SIAVNWHRYILLDE+  S  IFRLD  VW Y G  ++I L  +V  F++      + AL SL  SPL  +  F     VAG   +R+SV LPA+AL R DFG+  A  VT+ +NL    + +   + L  + L +G++ + +  ++ A A  +A VL    N  +++FS+++L+SLYGFF E R F
Sbjct:    4 KLPVGTCIGHAINSVRHNIVYAFRISWPWYVVVIPLTIIVSLVLSAAAGGDLTQNQGLAFLNNMISGLLLGFAFASIAVNWHRYILLDEVPDSRGIFRLDDKVWRYFGNIILIFLILVVAGFLVGIPLGIIAALTSLGASPLFPLLLFIIIVPVAGTIALRLSVKLPAIALGRTDFGLKNAFAVTRDSNLPIFLVALFEIVCLLGSLLLIGLLAAALNQLSPALAIAVAYVLHFAANWIITIFSITVLTSLYGFFAEGRDF 264          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: UPI001907CE1F (hypothetical protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001907CE1F)

HSP 1 Score: 124 bits (311), Expect = 1.040e-30
Identity = 90/264 (34.09%), Postives = 148/264 (56.06%), Query Frame = 1
Query:   13 KLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSFSAAPDPANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATLVPIFVLSFIFVTALPSLSPLLAVPFFVAG--------IYIMRMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFAT---FLALGIVLSVVG-SVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            +LPA   + HA+K+V        RI  PW LVLA +++   +F++            F  P+ +V+A ++++ F+SIAVNWHRYILLD++    ++FRLD   W YVG   +I L   V +F++  + +  L SLS ++ V   + G        I   R+SV LPA+A+ R+DF ++ A   T+ N L    +++   L+L      FLAL   L+++G ++ +  ++++   L       L++F+V++L+SLYGFFVE R F
Sbjct:   11 QLPAGACVSHAIKSVRNNIGYAFRISWPWYLVLAALNIGTLAFASFALAGGIEVHPGFYVPIAIVVALVTILAFASIAVNWHRYILLDQVPVGAELFRLDGLTWRYVGNVWLIGLIVGV-VFMIGMLPLMLLGSLSEVIGVVAVIIGLAGFMFVVISTYRLSVKLPAIAIGRRDFSLSDAWAATRDNKLPIFLVILFQFLLLIGVALVFLALDFTLALIGPTITLVISQLIQAFL----GWLLAIFNVTILTSLYGFFVEGRDF 269          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: UPI001906D150 (hypothetical protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001906D150)

HSP 1 Score: 117 bits (294), Expect = 2.740e-28
Identity = 93/273 (34.07%), Postives = 144/273 (52.75%), Query Frame = 1
Query:   13 KLPAFQTIKHALKAVFQFRNAGARIGLPW--------VLVLAGMSVIDRSFSAAPDPANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATLVPIFVLSFIFVTALPSL-------SPLLAVP------FFVAGIYIMRMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFATFLALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            KLP    I+HA+ +V    +   RI  PW        + V AG+ V+          A G  S +  G + LV  A+S V F++IAVNWHRYILLDE+     IFRLD   W Y+G  L+I L     +F++S + +  L +L       S ++AV       F +  I+ +R+SV LPA+AL R+DF  + AL  T+GN+L    L++    +   T + +  +  V G+++     +  ++  + VN  L++F +++L+SLYGFF E R F
Sbjct:    4 KLPVGTCIRHAVNSVRNNISYAFRISWPWYAAIAVLSIAVFAGLGVL---------AAGGVLSALHFGVVFLV--AISFVAFAAIAVNWHRYILLDEVPTGGSIFRLDGHTWRYLGNLLLIGLI----LFLISAVIMGPLIALAANLYSDSVIIAVVIVGLIFFMILAIFSVRLSVKLPAVALGRRDFTFSHALAATRGNSLPVLLLILFQVALALGTGMLMFFLEFVTGAIHPIFGFVTGLLAQLFVNWILTIFGITILTSLYGFFAEGRDF 261          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: A0A6G6WP23_9HYPH (Uncharacterized protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WP23_9HYPH)

HSP 1 Score: 114 bits (286), Expect = 4.180e-27
Identity = 91/266 (34.21%), Postives = 141/266 (53.01%), Query Frame = 1
Query:   13 KLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSFSAAPDPANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATLVPIFVLSFIFVTALPSLSPLLAVPFFVAG--------IYIMRMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFATFLALGIVLS------VVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            +LP    I+HAL +V        RI  PW +VLA +++   +FS            +   P+ LVIA ++++ F+SIAVNWHRYILLD++    ++FRLD   W Y G  L+I L   V  F+L  + +    SLS + ++   + G        I I R+SV LPA+AL R+DF ++ A   ++GN      +      ILF   LA+GI ++       +  ++   A +++ +L I V   L +  +++L+SLYGFFVE R F
Sbjct:    4 QLPTGLCIEHALTSVRNNIGYAFRISWPWYVVLAVVNIGILTFSGYAVAGGIDVHPVIFMPIILVIALINMLAFASIAVNWHRYILLDQVPTGSELFRLDGLTWRYFGNILLIGLIVAVA-FLLLVLLLQVFASLSTITSIAAILIGLAGLVFASISIYRLSVKLPAVALGRRDFSLSHAWAASRGNKQPIFFV------ILFQFSLAIGIAIAFLALDFALALIDPIIAFVVSQLLQIFVGWLLVILGITILTSLYGFFVEGRDF 262          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: A0A6G6WNN5_9HYPH (Uncharacterized protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WNN5_9HYPH)

HSP 1 Score: 102 bits (255), Expect = 1.430e-22
Identity = 88/269 (32.71%), Postives = 139/269 (51.67%), Query Frame = 1
Query:   13 KLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSFSAAPDPANGTASMMFPGP-MELVIAALSLVI----FSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATL-------VPIFVLSFI----FVTALPSLSPLLAVPFFVAGIYIMRMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILF-ATFLALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            +LPA   I+HA+ +V        RI  PW +++  + ++     +     N     +F  P + L+ + +S ++    F+SIAVNWHRYILLDE+  +  I R+D   W Y G  L+I +  +       VP+ ++  I        LP L  L+ +P  V     +R+SV LPA+AL R DFG+  A+  T+ +NLQ   L+ L  + LF    + +G +      V+   A  +A  L    N  +++FS+++L+SLYGFFVE R F
Sbjct:    4 QLPAGTCIRHAINSVRNNLTYAFRISWPWYVIVIPLIIVANLLLSYAAGGN-----LFEAPGLNLLNSLISGLLIGFAFASIAVNWHRYILLDEVPDARGILRVDDKTWRYFGNMLLIFVILVAAGMVIGVPLGIIGGIAFANVADYLPILLLLIIIP--VVSTLALRLSVKLPAIALGRGDFGMKHAMNATK-DNLQPIFLVALFEVALFLGAIVLIGAISYAFHVVSPTLAAAIAFALQFAANWIITIFSITVLTSLYGFFVEGRDF 264          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: A0A537P074_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537P074_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 8.980e-22
Identity = 75/188 (39.89%), Postives = 105/188 (55.85%), Query Frame = 1
Query:   13 KLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSFSAAPDPANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIML----ATLVPIFVLSFIFVTALPS-----LSPLLAVPFFVAGIYIMRMSVALPALALERKDFGITAALQVTQGN 549
            +LPA   I+HA+ +V        RI  PW  VL  +S     F+     + GT+SM       LV+A +SLV F+SIAVNWHRYILLDE+    ++FRLD   W Y G  L+I+L    A L+ +  LS +  +   +     L  L+ +P  +AG+  +R+SV LPA+AL R+DF +  A  VTQ N
Sbjct:    4 QLPAGTCIRHAVNSVRNNIAYAFRISWPWYAVLIPLSFAMFGFAGL--FSLGTSSMTPFFLAFLVLALISLVAFASIAVNWHRYILLDEMPKGREVFRLDDKTWRYFGNLLLILLILVGACLLVMLPLSILAASTNAAEFSVVLIALIILP--IAGVLSLRLSVKLPAIALGRRDFLLKDAWSVTQAN 187          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: A0A7Y2FSE2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2FSE2_9HYPH)

HSP 1 Score: 94.7 bits (234), Expect = 1.340e-19
Identity = 88/254 (34.65%), Postives = 126/254 (49.61%), Query Frame = 1
Query:   13 KLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSFSAAPDPANGTASMMFPGPMELV-IAALSLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATLVPIFVLSFIFVTALPSLSPLLAVPFFVAGIYIM-RMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFATFLALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRKF 768
            KLP F  I+H L   F       RI   W++V      +     A  D A  +AS +    +  V + A++L+  +SIAV WHRYILLDE        R+D  VW YVG  L I +  LV I V   +    +  L+ LL  P  +    I+ RMS+ LPA+ALER+DF  +     + GN      L  +  L+     +A+ IV + VG +    A ++ V+ +     F  +F +SLL++LYGFFVE R F
Sbjct:    4 KLPVFAAIRHMLLLSFNNLGQAFRITWAWMVVFVVTIAMFIWIIAGVDIATPSASDLVSLAVVFVFLIAIALMATASIAVAWHRYILLDEGGNVAFNLRIDGLVWRYVGNALAIGIVGLVLIGV-PIVVSMQVSELAILLVFPLLLLLAPILYRMSIKLPAVALERRDFRFSDGFDASAGNYWPLVGLAAVYVLVAIVINIAVAIV-TFVGLIFGPLAVVVQVLATALAEWFGIVFGISLLTTLYGFFVEGRSF 255          
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Match: A0A2W2BJ66_9HYPH (Uncharacterized protein n=2 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BJ66_9HYPH)

HSP 1 Score: 73.2 bits (178), Expect = 1.000e-11
Identity = 77/253 (30.43%), Postives = 123/253 (48.62%), Query Frame = 1
Query:   94 PWVLVLAGMSVIDRSFSAAPD-----PANGTASMMFPGPMELVIAAL---SLVIFSSIAVNWHRYILLDEITASEKIFRLDRPVWDYVGRTLIIMLATLVPIFVLSFI---------FVTALPSLSPLLA-----VPFFVAGIYIMRMSVALPALALERKDFGITAALQVTQGNNLQFAA--LLVLN-----GLILFATFLALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVEQRK 765
            PW+LV AG+  +   F   PD       +G A++         +A L   S++ FSS+AVNWHR +LLDE     +  RLD  +W Y+G T +++L TLVP+ V++ I         F +     S LLA     +P  V  + + R+ + LPA+A+ R D+G  AA   ++G  L  A   L+VL      GL+    F  L  VL   G +      ++  +  + +N    +  ++ +++LYG   E R+
Sbjct:    4 PWMLVYAGVQTLALLFQ--PDVLVVLSGDGPAALRMTSSGWWTVALLMGISMLAFSSLAVNWHRLLLLDEEAEGVERLRLDGLLWRYLGNTALLIL-TLVPVAVIAMIAGLSISFSVFGSGNGMGSFLLAFGIALLPVAVVLVVLERLMIKLPAIAIGRSDYGFGAAWDDSRGEFLSLAGFVLMVLGTTYGLGLLASVPFTLLSAVLGTHGGLG----PLIGSLWQLAINWIGWIIGLNAITTLYGILAEGRE 249          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17044.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019B72A8B1.760e-4440.54Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A847ZV12_9HYPH4.070e-3234.96Uncharacterized protein n=1 Tax=Phyllobacteriaceae... [more]
UPI001908A8394.710e-3136.02hypothetical protein n=1 Tax=Aestuariivirga sp. YI... [more]
UPI001907CE1F1.040e-3034.09hypothetical protein n=1 Tax=Aestuariivirga sp. YI... [more]
UPI001906D1502.740e-2834.07hypothetical protein n=1 Tax=Aestuariivirga sp. YI... [more]
A0A6G6WP23_9HYPH4.180e-2734.21Uncharacterized protein n=1 Tax=Nordella sp. HKS 0... [more]
A0A6G6WNN5_9HYPH1.430e-2232.71Uncharacterized protein n=1 Tax=Nordella sp. HKS 0... [more]
A0A537P074_9PROT8.980e-2239.89Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A7Y2FSE2_9HYPH1.340e-1934.65Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2W2BJ66_9HYPH1.000e-1130.43Uncharacterized protein n=2 Tax=Aestuariivirga lit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17044contigP-wetherbeei_contig17044:476..1246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1461693.ATO10_06236
Model size771
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.81e-10
EggNOG OGs28WBE@1|root,2ZIBU@2|Bacteria,1N471@1224|Proteobacteria,2U5HT@28211|Alphaproteobacteria
Cds size765
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.084173-CDS-P-wetherbeei_contig17044:475..12401683186106.084173-CDS-P-wetherbeei_contig17044:475..1240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17044 476..1240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.0944095-UTR-P-wetherbeei_contig17044:1240..12461683186106.0944095-UTR-P-wetherbeei_contig17044:1240..1246Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17044 1241..1246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17044.1.1prot_P-wetherbeei_contig17044.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17044 476..1240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17044.1.1

>prot_P-wetherbeei_contig17044.1.1 ID=prot_P-wetherbeei_contig17044.1.1|Name=mRNA_P-wetherbeei_contig17044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MNKLPAFQTIKHALKAVFQFRNAGARIGLPWVLVLAGMSVIDRSFSAAPD
PANGTASMMFPGPMELVIAALSLVIFSSIAVNWHRYILLDEITASEKIFR
LDRPVWDYVGRTLIIMLATLVPIFVLSFIFVTALPSLSPLLAVPFFVAGI
YIMRMSVALPALALERKDFGITAALQVTQGNNLQFAALLVLNGLILFATF
LALGIVLSVVGSVNMAAAKILAVVLSIPVNLFLSLFSVSLLSSLYGFFVE
QRKF*
back to top

mRNA from alignment at P-wetherbeei_contig17044:476..1246-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17044.1.1 ID=mRNA_P-wetherbeei_contig17044.1.1|Name=mRNA_P-wetherbeei_contig17044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig17044:476..1246- (Phaeothamnion wetherbeei SAG_119_79)
AACCCCATGAATAAACTGCCCGCCTTTCAAACCATCAAACATGCCCTGAA GGCAGTTTTTCAGTTCCGCAATGCCGGGGCCAGGATTGGCCTGCCCTGGG TTCTGGTGCTCGCCGGCATGAGCGTCATTGACCGCAGTTTTTCTGCTGCT CCTGATCCCGCAAATGGCACCGCCAGCATGATGTTCCCGGGCCCGATGGA ACTTGTCATTGCAGCATTAAGCCTGGTGATTTTTTCTTCTATCGCCGTGA ATTGGCACCGTTATATCCTGCTTGATGAAATCACTGCGTCTGAAAAAATC TTCCGGCTTGATCGCCCCGTTTGGGACTATGTCGGCCGCACCCTGATAAT CATGCTCGCAACACTGGTTCCAATCTTCGTTCTCTCATTCATTTTCGTTA CGGCCCTGCCAAGTCTCAGCCCGCTGCTTGCAGTCCCGTTCTTTGTGGCG GGCATCTACATCATGCGCATGTCCGTTGCCCTCCCTGCCCTGGCCCTTGA ACGCAAGGACTTCGGCATCACAGCGGCCTTGCAGGTAACACAGGGAAACA ATTTGCAATTTGCCGCTCTCCTGGTGCTGAACGGGCTCATCCTCTTCGCC ACATTTCTGGCGCTTGGAATTGTCCTCTCCGTTGTGGGCAGCGTCAACAT GGCGGCGGCCAAGATTCTCGCCGTGGTGTTGAGCATCCCGGTGAATCTTT TTCTCTCTCTCTTCAGCGTCAGCCTGCTGAGTTCGCTCTATGGTTTCTTC GTCGAACAGAGAAAATTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17044:476..1246-

>mRNA_P-wetherbeei_contig17044.1.1 ID=mRNA_P-wetherbeei_contig17044.1.1|Name=mRNA_P-wetherbeei_contig17044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig17044:476..1246- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATAAACTGCCCGCCTTTCAAACCATCAAACATGCCCTGAAGGCAGT
TTTTCAGTTCCGCAATGCCGGGGCCAGGATTGGCCTGCCCTGGGTTCTGG
TGCTCGCCGGCATGAGCGTCATTGACCGCAGTTTTTCTGCTGCTCCTGAT
CCCGCAAATGGCACCGCCAGCATGATGTTCCCGGGCCCGATGGAACTTGT
CATTGCAGCATTAAGCCTGGTGATTTTTTCTTCTATCGCCGTGAATTGGC
ACCGTTATATCCTGCTTGATGAAATCACTGCGTCTGAAAAAATCTTCCGG
CTTGATCGCCCCGTTTGGGACTATGTCGGCCGCACCCTGATAATCATGCT
CGCAACACTGGTTCCAATCTTCGTTCTCTCATTCATTTTCGTTACGGCCC
TGCCAAGTCTCAGCCCGCTGCTTGCAGTCCCGTTCTTTGTGGCGGGCATC
TACATCATGCGCATGTCCGTTGCCCTCCCTGCCCTGGCCCTTGAACGCAA
GGACTTCGGCATCACAGCGGCCTTGCAGGTAACACAGGGAAACAATTTGC
AATTTGCCGCTCTCCTGGTGCTGAACGGGCTCATCCTCTTCGCCACATTT
CTGGCGCTTGGAATTGTCCTCTCCGTTGTGGGCAGCGTCAACATGGCGGC
GGCCAAGATTCTCGCCGTGGTGTTGAGCATCCCGGTGAATCTTTTTCTCT
CTCTCTTCAGCGTCAGCCTGCTGAGTTCGCTCTATGGTTTCTTCGTCGAA
CAGAGAAAATTCTGA
back to top