mRNA_P-wetherbeei_contig17041.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17041.1.1
Unique NamemRNA_P-wetherbeei_contig17041.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A6I3ESF2_9ACTN (Ribonuclease VapC n=3 Tax=root TaxID=1 RepID=A0A6I3ESF2_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 4.140e-25
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLGA 201
            D FALV VD  VC+ A +IGE L  R+LDA+HLASAQRLL+PG+ FVTFDLRQAQ+AR LG TVLGA
Sbjct:   68 DGFALVCVDAVVCQAAAEIGEHLGVRTLDALHLASAQRLLVPGLTFVTFDLRQAQAARSLGFTVLGA 134          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A7K1B5F1_9ACTN (Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A7K1B5F1_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 3.640e-21
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLGA 201
            DAFALV   E VCR A +IGE L  RSLDAIHLASAQ L IP + F+TFDLRQAQ+AR LG  VLGA
Sbjct:   68 DAFALVVAGEEVCRAAGRIGEVLGVRSLDAIHLASAQALQIPTLSFLTFDLRQAQAARSLGFAVLGA 134          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A359F8D8_9ACTN (PINc domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A359F8D8_9ACTN)

HSP 1 Score: 86.3 bits (212), Expect = 4.290e-20
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLGA 201
            +AFA+V+ +E+V   A +IGE L  RSLDAIHLA+A+RL IP + FVTFDLRQAQ+AR LGL VLGA
Sbjct:   69 EAFAVVSCEESVASLAAEIGETLGVRSLDAIHLATAKRLQIPDLSFVTFDLRQAQAARSLGLQVLGA 135          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A3C2B3S5_9ACTN (Ribonuclease VapC n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B3S5_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 1.080e-18
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLG 198
            D FALV  D+ VC +A  I E+L   SLDAIHLASA+RL + G+ F+TFDLRQAQ+AR LG  VLG
Sbjct:  101 DRFALVVADQVVCESAANIAEQLGVGSLDAIHLASARRLQVVGLSFITFDLRQAQAARSLGFNVLG 166          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A6I2ZRE4_9ACTN (Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A6I2ZRE4_9ACTN)

HSP 1 Score: 76.3 bits (186), Expect = 3.590e-16
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLGA 201
            D  AL+ +DE   R+A  I E L  RSLDAIHLA AQ+L I  + FVTFD+RQAQ+AR++G TV+GA
Sbjct:   68 DLMALITLDEPRWRSAADIAEELGVRSLDAIHLACAQKLNINPLTFVTFDIRQAQAARRMGFTVVGA 134          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A7W1AQT4_9ACTN (Ribonuclease VapC n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W1AQT4_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 1.440e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLGA 201
            +  ++V +DE  C  A  I E    R+LDA+HL++AQR+  P +PF+TFDLRQAQ+AR LGLTV+GA
Sbjct:   68 EVLSIVDLDEVTCEGAAAIAELTGVRTLDALHLSAAQRVGGPAVPFLTFDLRQAQAARALGLTVVGA 134          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A6B1B0N8_9ACTN (Ribonuclease VapC n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B0N8_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 2.820e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLGA 201
            +AFALV++D T C  A  I E+ L RSLDA+H+A+AQR       F+TFD+RQAQ+AR +GL VLGA
Sbjct:   68 NAFALVSIDSTTCNRAAVIAEQTLCRSLDALHVAAAQRAG-ESTTFLTFDMRQAQAARSVGLVVLGA 133          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A7K0XUX1_9ACTN (Ribonuclease VapC n=4 Tax=root TaxID=1 RepID=A0A7K0XUX1_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 4.310e-15
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLG 198
            D  A+V  DE + R A  I E L  R+LDA+HL +AQ L IP + F TFDLRQ Q+ARQLG+ VLG
Sbjct:  101 DCMAMVNPDERMWRAAADIAEHLGVRTLDAVHLGTAQHLRIPSLTFCTFDLRQGQAARQLGMHVLG 166          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A7W1QEX5_9ACTN (Ribonuclease VapC n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W1QEX5_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 1.160e-14
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 AFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVL 195
            AF +V +D   C TA  I E    R+LDA+HLA+A+R+    +PFVTFD+RQAQ+AR LGLTVL
Sbjct:   69 AFGIVELDAVTCETAADIAELTGARTLDALHLAAARRVGGSAIPFVTFDVRQAQAARTLGLTVL 132          
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Match: A0A7W1QG85_9ACTN (Ribonuclease VapC n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W1QG85_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 4.650e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    4 AFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFDLRQAQSARQLGLTVLGA 201
            AFA+V +D   C +A  I E    R+LDA+HLA+A+R+    +PFVTFDLRQAQ+AR LGL VL A
Sbjct:   69 AFAIVELDCVTCESAADIAELTGARTLDALHLAAARRIGGAAVPFVTFDLRQAQAARILGLAVLPA 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3ESF2_9ACTN4.140e-2571.64Ribonuclease VapC n=3 Tax=root TaxID=1 RepID=A0A6I... [more]
A0A7K1B5F1_9ACTN3.640e-2170.15Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A7K... [more]
A0A359F8D8_9ACTN4.290e-2065.67PINc domain-containing protein (Fragment) n=1 Tax=... [more]
A0A3C2B3S5_9ACTN1.080e-1862.12Ribonuclease VapC n=1 Tax=Acidimicrobiaceae bacter... [more]
A0A6I2ZRE4_9ACTN3.590e-1658.21Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A6I... [more]
A0A7W1AQT4_9ACTN1.440e-1553.73Ribonuclease VapC n=1 Tax=Thermoleophilaceae bacte... [more]
A0A6B1B0N8_9ACTN2.820e-1556.72Ribonuclease VapC n=1 Tax=Acidimicrobiaceae bacter... [more]
A0A7K0XUX1_9ACTN4.310e-1556.06Ribonuclease VapC n=4 Tax=root TaxID=1 RepID=A0A7K... [more]
A0A7W1QEX5_9ACTN1.160e-1456.25Ribonuclease VapC n=1 Tax=Solirubrobacterales bact... [more]
A0A7W1QG85_9ACTN4.650e-1456.06Ribonuclease VapC n=1 Tax=Solirubrobacterales bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17041contigP-wetherbeei_contig17041:1260..1463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog106370.Francci3_2877
PFAMsPIN
Model size204
Max annot lvl201174|Actinobacteria
KEGG koko:K07064
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.35e-07
EggNOG OGsCOG1848@1|root,COG1848@2|Bacteria,2GRA5@201174|Actinobacteria,4EVXY@85013|Frankiales
DescriptionToxic component of a toxin-antitoxin (TA) module. An RNase
Cds size204
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.034553-CDS-P-wetherbeei_contig17041:1259..14631683186106.034553-CDS-P-wetherbeei_contig17041:1259..1463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17041 1260..1463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17041.1.1prot_P-wetherbeei_contig17041.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17041 1260..1463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17041.1.1

>prot_P-wetherbeei_contig17041.1.1 ID=prot_P-wetherbeei_contig17041.1.1|Name=mRNA_P-wetherbeei_contig17041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
DAFALVAVDETVCRTATQIGERLLTRSLDAIHLASAQRLLIPGMPFVTFD
LRQAQSARQLGLTVLGA*
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mRNA from alignment at P-wetherbeei_contig17041:1260..1463-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17041.1.1 ID=mRNA_P-wetherbeei_contig17041.1.1|Name=mRNA_P-wetherbeei_contig17041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig17041:1260..1463- (Phaeothamnion wetherbeei SAG_119_79)
GACGCATTCGCGCTCGTCGCCGTCGACGAGACCGTGTGTCGCACCGCAAC GCAGATCGGCGAGCGCCTGCTGACGCGATCGCTCGACGCCATCCACCTCG CCAGCGCGCAACGGCTGCTGATCCCCGGGATGCCGTTCGTCACCTTCGAC CTTCGCCAGGCGCAATCGGCGCGCCAGTTGGGCCTGACCGTGCTCGGCGC CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17041:1260..1463-

>mRNA_P-wetherbeei_contig17041.1.1 ID=mRNA_P-wetherbeei_contig17041.1.1|Name=mRNA_P-wetherbeei_contig17041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig17041:1260..1463- (Phaeothamnion wetherbeei SAG_119_79)
GACGCATTCGCGCTCGTCGCCGTCGACGAGACCGTGTGTCGCACCGCAAC
GCAGATCGGCGAGCGCCTGCTGACGCGATCGCTCGACGCCATCCACCTCG
CCAGCGCGCAACGGCTGCTGATCCCCGGGATGCCGTTCGTCACCTTCGAC
CTTCGCCAGGCGCAATCGGCGCGCCAGTTGGGCCTGACCGTGCTCGGCGC
CTGA
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