mRNA_P-wetherbeei_contig1703.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1703.6.1
Unique NamemRNA_P-wetherbeei_contig1703.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1703.6.1 vs. uniprot
Match: A0A485L451_9STRA (Aste57867_15085 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L451_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.480e-14
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    7 RRSRKAEAAMRNPKCGYDFISKLYGDNDGNDGGAGTTGPADGGGTTFLQRMDEATHSQRQRLERQRAEEAYAACLDKKRCPGCGAEQTYDEVRGKRTACQNCNLEYRSAAQW 342
            R+++ +EAAMRNP CGYDF+S+  GD         T    D     F+ RM+ A +++R+RLE  R EEAY    +KK+CP CG  Q+Y E R K+  C  C + +     W
Sbjct:  295 RKTKASEAAMRNPACGYDFVSRQDGDE--------TNQNED-----FIARMEAAENNRRKRLETTRGEEAYNVRQNKKQCPKCGMVQSYAEYRDKKKKCTFCGVPFALPKAW 393
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BLAST of mRNA_P-wetherbeei_contig1703.6.1 vs. uniprot
Match: D8LTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.030e-11
Identity = 47/113 (41.59%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:   13 SRKAEAAMRNPKCGYDFISKLYGDNDGNDGGAGTTGPADGGGTT---FLQRMDEATHSQRQRLERQRAEEAYAACLDKKRCPGCGAEQTYDEVRGKRTACQNCNLEYRSAAQW 342
            +R A AA R+ K G           DG  GG        G G +   FL RM     ++   +E +R E AY A LDK+ CPGCGAEQ+YDEV  KR  C NC  EYR    W
Sbjct:  300 TRSAAAAARHRKGGAG---------DGATGGGEEAKDGSGPGASIDAFLYRMGAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTW 403
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BLAST of mRNA_P-wetherbeei_contig1703.6.1 vs. uniprot
Match: A0A024UD78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UD78_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.560e-11
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:    1 RPRRSRKAEAAMRNPKCGYDFISKLYGDNDGNDGGAGTTGPADGGGTTFLQRMDEATHSQRQRLERQRAEEAYAACLDKKRCPGCGAEQTYDEVRGKRTACQNCNLEY 324
            RP+++R +  AM+NP CGYDF+++    +  ND               F+ RMD A  ++++RLE  R EEAY    +K++CP CG  Q++ E R K+  C  C + +
Sbjct:  355 RPKKTRASVRAMKNPACGYDFVTRTAETDSAND---------------FIGRMDAAEQNRQKRLELIRGEEAYNVRQNKRQCPKCGMVQSFAEWRDKKKRCTFCGVTF 447
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BLAST of mRNA_P-wetherbeei_contig1703.6.1 vs. uniprot
Match: A0A6H5JHI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.600e-7
Identity = 31/66 (46.97%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:  145 FLQRMDEATHSQRQRLERQRAEEAYAACLDKKRCPGCGAEQTYDEVRGKRTACQNCNLEYRSAAQW 342
            FL RMD    ++   +E +R E AY A LDK+ CP CGAEQ+YDEV  KR        EYR    W
Sbjct:  399 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPDCGAEQSYDEVEEKRKIXXXXEAEYRKPKTW 464
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BLAST of mRNA_P-wetherbeei_contig1703.6.1 vs. uniprot
Match: A0A482SIA4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIA4_9ARCH)

HSP 1 Score: 52.4 bits (124), Expect = 4.030e-5
Identity = 35/109 (32.11%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:    4 PRRSRKAEAAMRNPKCGYDFISKLYGDNDGNDGGAGTTGPADGGGTTFLQRM--DEATHSQRQRLERQRAEEAYAACLDKKRCPGCGAEQTYDEVRGKRTACQNCNLEY 324
            P+RS +A AAM+N +CGYDF+ +L    D                  FL R+  D A   +  + E    +  Y A +DK +CP C   Q++DE   KR  C  C++++
Sbjct:  241 PKRSAEALAAMKNKRCGYDFMDRLSSRGD------------------FLDRIAPDPAKTKKLPKSEMDALQADYEARIDKLQCPRCLRPQSFDEFFEKRRTCTLCSVKF 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1703.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A485L451_9STRA5.480e-1440.18Aste57867_15085 protein n=1 Tax=Aphanomyces stella... [more]
D8LTK2_ECTSI2.030e-1141.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024UD78_9STRA9.560e-1135.19Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6H5JHI1_9PHAE1.600e-746.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SIA4_9ARCH4.030e-532.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1703contigP-wetherbeei_contig1703:6083..6508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008868060.1
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.15e-14
EggNOG OGs2AZKF@1|root,2S063@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003790.1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.6208482-CDS-P-wetherbeei_contig1703:6082..65081683186105.6208482-CDS-P-wetherbeei_contig1703:6082..6508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1703 6083..6508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1703.6.1prot_P-wetherbeei_contig1703.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1703 6083..6508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1703.6.1

>prot_P-wetherbeei_contig1703.6.1 ID=prot_P-wetherbeei_contig1703.6.1|Name=mRNA_P-wetherbeei_contig1703.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
RPRRSRKAEAAMRNPKCGYDFISKLYGDNDGNDGGAGTTGPADGGGTTFL
QRMDEATHSQRQRLERQRAEEAYAACLDKKRCPGCGAEQTYDEVRGKRTA
CQNCNLEYRSAAQWRRRDWEQRSDKYADEATRRRKELEETVL
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mRNA from alignment at P-wetherbeei_contig1703:6083..6508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1703.6.1 ID=mRNA_P-wetherbeei_contig1703.6.1|Name=mRNA_P-wetherbeei_contig1703.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig1703:6083..6508- (Phaeothamnion wetherbeei SAG_119_79)
AGACCGCGGCGCTCCCGGAAGGCGGAAGCGGCCATGCGCAACCCGAAGTG
CGGCTACGATTTCATCAGCAAACTTTACGGAGACAACGACGGCAACGACG
GCGGCGCAGGCACGACCGGCCCCGCCGACGGGGGCGGCACGACGTTCCTG
CAGCGCATGGACGAAGCTACGCACAGCCAGCGGCAGCGGCTGGAGCGGCA
GCGTGCGGAAGAAGCGTACGCGGCCTGCCTCGACAAAAAGCGCTGCCCCG
GCTGCGGGGCGGAACAGACGTATGACGAGGTGCGCGGCAAGCGGACGGCG
TGTCAGAACTGCAACCTCGAGTACCGGTCGGCGGCGCAATGGCGGCGGCG
GGACTGGGAGCAGCGGAGCGACAAGTACGCGGACGAGGCGACGCGGCGGC
GGAAGGAGCTCGAGGAGACGGTGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1703:6083..6508-

>mRNA_P-wetherbeei_contig1703.6.1 ID=mRNA_P-wetherbeei_contig1703.6.1|Name=mRNA_P-wetherbeei_contig1703.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig1703:6083..6508- (Phaeothamnion wetherbeei SAG_119_79)
AGACCGCGGCGCTCCCGGAAGGCGGAAGCGGCCATGCGCAACCCGAAGTG
CGGCTACGATTTCATCAGCAAACTTTACGGAGACAACGACGGCAACGACG
GCGGCGCAGGCACGACCGGCCCCGCCGACGGGGGCGGCACGACGTTCCTG
CAGCGCATGGACGAAGCTACGCACAGCCAGCGGCAGCGGCTGGAGCGGCA
GCGTGCGGAAGAAGCGTACGCGGCCTGCCTCGACAAAAAGCGCTGCCCCG
GCTGCGGGGCGGAACAGACGTATGACGAGGTGCGCGGCAAGCGGACGGCG
TGTCAGAACTGCAACCTCGAGTACCGGTCGGCGGCGCAATGGCGGCGGCG
GGACTGGGAGCAGCGGAGCGACAAGTACGCGGACGAGGCGACGCGGCGGC
GGAAGGAGCTCGAGGAGACGGTGCTC
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