mRNA_P-wetherbeei_contig1703.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1703.4.1
Unique NamemRNA_P-wetherbeei_contig1703.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A6V1N8Z5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N8Z5_HETAK)

HSP 1 Score: 107 bits (267), Expect = 1.010e-27
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    4 LLNWKYMDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVV-VSLYYDFLPANRGEPLLLVWN 282
            LLNW YM+   RV+TST++F +K+ L+ERHGR+E+L IC   ++EANEMAD+ +TL DYG++GAP    P     ++YDF  ++  +PLLLVWN
Sbjct:   54 LLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLVWN 147          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A836CBV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBV7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.510e-25
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 QLLNWKYMDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLL 270
            +LLNW+YM+H   VRTST++FT++  L ERHG V+DL ICH+ + +ANEMAD+ +TLA+Y I+G  +   P+ + ++YDF P N    LL
Sbjct:   15 KLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTDALLL 104          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A3R7HL40_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HL40_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.910e-25
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 QLLNWKYMDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLLL 273
            +LLNW Y++   R +TST LF +K +++++HG + DL+IC  H++EANE+  D  TLA++GIEGAP G   VV  ++YDF P     PLLL
Sbjct:   83 RLLNWSYLNFKFRTKTSTRLFAVKQQIQKQHGPISDLKICKGHFSEANELLQDMNTLAEFGIEGAPEGEPEVVCLVHYDFKPEQHDNPLLL 173          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A8K1CF99_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF99_PYTOL)

HSP 1 Score: 100 bits (250), Expect = 1.030e-22
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 QLLNWKYMDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLLL 273
            +LLNW Y++  +RV+T+T LF +K ++ + HG + DL++C  ++AEANEM  D  TLADYGIEGAP   A VV  ++YDF P     PLLL
Sbjct:  573 RLLNWSYLNFKIRVKTTTRLFAVKQQIHKHHGPITDLKLCKGNFAEANEMHQDLDTLADYGIEGAPEHEAEVVCVIHYDFKPQQHDNPLLL 663          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A7S2WAM6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAM6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.530e-21
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 QLLNWKYMDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLLLVWN 282
            +L+NW +M+ T+RV+TS  LF +KD+++ RHG V++L +C   ++E NE+ DD  TL D G  GA     PV  ++YYDF   +  +PLLLV N
Sbjct:   49 KLMNWDFMNSTLRVKTSMRLFQIKDEIQRRHGLVKNLVLCKGVFSEVNELKDDMATLEDLGFPGAMEDEKPVSATIYYDFKAQDHDDPLLLVRN 142          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A7S1C5U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5U2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.190e-21
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 QLLNWKYMDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLLLV 276
            +L+NW Y++H +RVRT T LF++K +L ERHGR+ +LR+   H     E+AD+ QTL   G+ GA +   PV  +L YDF P +  +PLLLV
Sbjct:   58 RLVNWAYLNHELRVRTDTPLFSIKKRLVERHGRMSELRLYKEHVTPETELADEMQTLEAAGVPGAAKDDPPVRFALVYDFKPYDSADPLLLV 149          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A7S2V1Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.150e-20
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    4 LLNWKYMDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPR 201
            L+NWKYM+   RV+T+T++FTLK+ LRE+HGRV DL +C   + E NEM D+ QTLADYG+EGA R
Sbjct:   49 LMNWKYMNFQHRVKTTTHIFTLKNMLREKHGRVSDLVLCKDSFREENEMNDEMQTLADYGVEGAGR 114          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A482UWT5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWT5_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 2.020e-15
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   22 MDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVV------------VSLYYDFLPANRGEPLLL 273
            M+ +M+ R +T +FT+K  LRERHGR++DL++C   + ++NE+ D+  TL + G++G P G A  V            V  +YDF P N  +P+LL
Sbjct:    1 MNFSMKFRENTNVFTIKKLLRERHGRIDDLKLCFHSFTDSNEVLDEMLTLLECGLKGHPVGHAVTVEEKELEEKSIPIVQCFYDFKPTNYSDPVLL 96          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A7S0M4X8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M4X8_9CRYP)

HSP 1 Score: 59.3 bits (142), Expect = 4.530e-9
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    1 QLLNWKYMDHTMRVRTSTYLFTLKDKLRERHG-RVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLLL 273
            +L+ W Y++ ++ +RTS  LFT+ DK+RERHG  + D+ +        N + D   TL D G EG    + P    ++YD+   +   PLLL
Sbjct:   27 KLITWDYLNFSLLMRTSARLFTIVDKIRERHGGSISDILLYRHQVHPQNVLLDTSITLDDAGYEGGSSSSNPKEEIMWYDYQAHSSDCPLLL 118          
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Match: A0A7S0Z5G1_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z5G1_9CRYP)

HSP 1 Score: 50.8 bits (120), Expect = 2.230e-5
Identity = 30/92 (32.61%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 QLLNWKYMDHTMRVRTSTYLFTLKDKLRERHG-RVEDLRICHSHYAEANEMADDQQTLADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLLL 273
            +L+ W++++ T+ VR ST L+++ DK+R+RHG  ++D+ +        N + +  +TL D G EG  R + P    ++YD+   +   PLLL
Sbjct:   52 KLVTWEHLNFTVVVRNSTRLYSIVDKVRDRHGGSIKDVILYRHQVHPQNILQELGKTLDDVGFEGGSR-SDPKDEVIWYDYQAHSSDCPLLL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1703.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6V1N8Z5_HETAK1.010e-2752.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CBV7_9STRA2.510e-2550.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3R7HL40_9STRA5.910e-2548.35Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8K1CF99_PYTOL1.030e-2250.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2WAM6_9STRA2.530e-2144.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1C5U2_9STRA6.190e-2146.74Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2V1Q2_9STRA1.150e-2060.61Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482UWT5_9ARCH2.020e-1538.54Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0M4X8_9CRYP4.530e-934.78Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0Z5G1_9CRYP2.230e-532.61Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1703contigP-wetherbeei_contig1703:4701..5110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEG3
Model size300
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.59e-23
EggNOG OGs2CYNG@1|root,2S5BB@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_004810.1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.5661666-CDS-P-wetherbeei_contig1703:4700..49281683186105.5661666-CDS-P-wetherbeei_contig1703:4700..4928Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1703 4701..4928 -
1683186105.5759158-CDS-P-wetherbeei_contig1703:5038..50891683186105.5759158-CDS-P-wetherbeei_contig1703:5038..5089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1703 5039..5089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.590553-UTR-P-wetherbeei_contig1703:5089..51101683186105.590553-UTR-P-wetherbeei_contig1703:5089..5110Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1703 5090..5110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1703.4.1prot_P-wetherbeei_contig1703.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1703 4701..5089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1703.4.1

>prot_P-wetherbeei_contig1703.4.1 ID=prot_P-wetherbeei_contig1703.4.1|Name=mRNA_P-wetherbeei_contig1703.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MDHTMRVRTSTYLFTLKDKLRERHGRVEDLRICHSHYAEANEMADDQQTL
ADYGIEGAPRGAAPVVVSLYYDFLPANRGEPLLLVWNDSSTT*
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mRNA from alignment at P-wetherbeei_contig1703:4701..5110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1703.4.1 ID=mRNA_P-wetherbeei_contig1703.4.1|Name=mRNA_P-wetherbeei_contig1703.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=410bp|location=Sequence derived from alignment at P-wetherbeei_contig1703:4701..5110- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTCCTAAACTGGAAGTACATGGATCATACAATGCGCGTCAGAACGTC CACTTATCTCTTTACGCTCAAGGTGAGGCAGCTTCCTCGTGCTTTTCCTC TTGGTTTCGCGTTGTGCAGGAATAGCTATTGTGCCATGATTCGAAATAAA ATACCTTCGCACCTCCATCCGTCCATCTTCAGGATAAGTTGCGAGAGCGG CATGGACGCGTGGAGGACCTCCGGATCTGTCACAGCCATTACGCCGAGGC CAACGAGATGGCGGATGACCAGCAGACCTTGGCGGACTACGGGATAGAGG GCGCGCCGCGGGGAGCGGCCCCCGTCGTCGTCAGCCTTTATTACGACTTC TTGCCGGCGAACCGCGGCGAGCCCCTGCTGCTCGTATGGAACGACTCGAG CACAACATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1703:4701..5110-

>mRNA_P-wetherbeei_contig1703.4.1 ID=mRNA_P-wetherbeei_contig1703.4.1|Name=mRNA_P-wetherbeei_contig1703.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig1703:4701..5110- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCATACAATGCGCGTCAGAACGTCCACTTATCTCTTTACGCTCAA
GGATAAGTTGCGAGAGCGGCATGGACGCGTGGAGGACCTCCGGATCTGTC
ACAGCCATTACGCCGAGGCCAACGAGATGGCGGATGACCAGCAGACCTTG
GCGGACTACGGGATAGAGGGCGCGCCGCGGGGAGCGGCCCCCGTCGTCGT
CAGCCTTTATTACGACTTCTTGCCGGCGAACCGCGGCGAGCCCCTGCTGC
TCGTATGGAACGACTCGAGCACAACATAA
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