mRNA_P-wetherbeei_contig17.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17.5.1
Unique NamemRNA_P-wetherbeei_contig17.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17contigP-wetherbeei_contig17:16157..17908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0V4
PFAMsCLASP_N
Model size1257
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.98e-09
EggNOG OGsKOG2933@1|root,KOG2933@2759|Eukaryota
Descriptionnon-motile cilium assembly
Cds size1254
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.5756996-CDS-P-wetherbeei_contig17:16156..161771683186104.5756996-CDS-P-wetherbeei_contig17:16156..16177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 16157..16177 +
1683186104.584483-CDS-P-wetherbeei_contig17:16372..165191683186104.584483-CDS-P-wetherbeei_contig17:16372..16519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 16373..16519 +
1683186104.5918787-CDS-P-wetherbeei_contig17:16821..179071683186104.5918787-CDS-P-wetherbeei_contig17:16821..17907Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 16822..17907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17.5.1prot_P-wetherbeei_contig17.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17 16157..17907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17.5.1

>prot_P-wetherbeei_contig17.5.1 ID=prot_P-wetherbeei_contig17.5.1|Name=mRNA_P-wetherbeei_contig17.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=418bp
LSLAALKVIAAYLRRLCDFSNDCDGGRGRGLDIAPSLQPHVEVFCDVLMP
KLADDKVAVRHHAAAAMSALVRAATLPPLIDPLCGRGGLRSAAWRAREGA
IRVFMAGLLWDGTTSGVSCAAGGSGAGGGTAASGAEDAARGRPRVRPRQQ
LPSAAEESGRRKYCLRCDPKVVVTSLGAMPADSHPEVREVAMAALALVQA
VYGDEIDVIQTLQSKGYLSFASTAAAGTTVKGGGAGITARAQAETMSALL
SRLSQPKIDMPVLSAEGLVEFRHRRCVGNGALGSGGGGGGGSGGGGDEAR
ANGAQRNRRSLDQEDSAPSAKGAARGVVEGAAAASGAGSAMPTRRHSVDS
SGSHASSGRQPAAGAAGSGGAAAVTLQRPASDHATNARFGVSNGVNEAGR
QAAEDWRAKTWGFETEKL
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mRNA from alignment at P-wetherbeei_contig17:16157..17908+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17.5.1 ID=mRNA_P-wetherbeei_contig17.5.1|Name=mRNA_P-wetherbeei_contig17.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1752bp|location=Sequence derived from alignment at P-wetherbeei_contig17:16157..17908+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCACTGGCTGCACTCAAGGTGAGGTGAAGAGGGTAGGAACTAGCCTT
GCGGATGTGGCGAAGTAACGTGGTTTGGATGAACCAGGGGATTCTGCCTG
AGCCGTTTGAGCAAACAAGCGAATTGCTTCCCACTGTTCCAATTGCCTGT
TGGTCGCGCTTGGGAAAGGAAGGCGGTCCTGTCCTCATTGTGGTTTTATT
TCTTCCTTTCTTGCAGGTCATTGCCGCCTACCTGCGAAGGTTATGTGACT
TCTCCAACGATTGCGACGGCGGCCGTGGGCGGGGCTTGGATATAGCGCCA
TCCTTGCAGCCCCACGTCGAGGTGTTCTGTGACGTCCTCATGCCAAAGCT
AGCTGATGATAAGGTGAGTCGGAGCGTCTTCAAGTTCTATCAACTGTTCA
CCGGAGAATGCGGGTTTGATAACGATAATTCTTTCCGCTATCACGCAAAC
TGGATAGATAAGTTCAAAATTCGAATTCACTCTGCTATCAAACTCTCGAT
ACCGATTATTCCGGCGTTTCTTCGTATTTGTCGCAGCACATAATTCCAAA
AGAACCGTAGGAATTGATTCCAAGCGATCTTCTAGCATCCTCAGAACGTT
GTATTCACTTCGCCTTTTACCCGCCGTACCCAACTTTCCGTCTTCCTCGC
TGTTGCGTCTGCCAGGTGGCTGTCCGTCACCACGCCGCCGCCGCCATGTC
GGCCCTCGTGCGGGCCGCCACGCTGCCGCCGCTCATCGACCCCCTGTGCG
GACGAGGCGGCCTCCGCAGCGCGGCCTGGCGCGCGCGGGAGGGAGCCATC
CGAGTCTTCATGGCAGGACTTTTGTGGGACGGCACCACCAGCGGTGTTAG
CTGCGCTGCTGGCGGCAGCGGCGCTGGCGGCGGTACCGCCGCCTCCGGCG
CTGAAGATGCAGCACGCGGACGACCGCGCGTCCGGCCGCGGCAGCAGCTG
CCGTCTGCGGCTGAAGAGTCGGGGCGGCGGAAGTATTGCCTTCGATGCGA
CCCGAAAGTTGTCGTAACGAGCTTGGGAGCGATGCCAGCGGATTCGCACC
CGGAGGTGCGAGAGGTGGCTATGGCGGCACTGGCGCTGGTGCAGGCCGTC
TACGGCGACGAAATCGATGTCATACAAACGCTGCAGTCGAAAGGGTATTT
GAGCTTTGCCTCGACTGCAGCAGCGGGCACCACGGTAAAGGGCGGCGGTG
CCGGGATTACGGCGCGTGCGCAGGCCGAAACGATGTCGGCGCTGCTGTCG
CGCCTGTCGCAGCCGAAGATCGACATGCCGGTCCTGTCAGCCGAAGGGCT
CGTGGAATTCCGACATCGACGGTGCGTTGGCAACGGTGCACTTGGTTCCG
GCGGCGGCGGAGGCGGCGGCAGCGGCGGCGGCGGTGACGAAGCTCGTGCA
AACGGCGCGCAAAGGAACCGGCGGTCGCTTGATCAGGAAGACAGCGCTCC
GAGCGCTAAAGGAGCAGCGAGAGGGGTGGTAGAAGGCGCTGCTGCCGCTT
CTGGCGCCGGGTCGGCGATGCCGACACGCCGGCATTCGGTCGATTCCTCC
GGCAGCCACGCCTCATCTGGAAGGCAACCTGCCGCCGGCGCAGCGGGCTC
AGGTGGCGCTGCCGCCGTCACGCTGCAGCGCCCGGCGTCTGACCACGCGA
CGAACGCCCGATTCGGCGTTTCCAATGGCGTGAATGAGGCCGGCCGGCAG
GCTGCAGAGGACTGGCGGGCAAAAACTTGGGGTTTTGAGACGGAAAAGCT
GC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17:16157..17908+

>mRNA_P-wetherbeei_contig17.5.1 ID=mRNA_P-wetherbeei_contig17.5.1|Name=mRNA_P-wetherbeei_contig17.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1254bp|location=Sequence derived from alignment at P-wetherbeei_contig17:16157..17908+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCACTGGCTGCACTCAAGGTCATTGCCGCCTACCTGCGAAGGTTATG
TGACTTCTCCAACGATTGCGACGGCGGCCGTGGGCGGGGCTTGGATATAG
CGCCATCCTTGCAGCCCCACGTCGAGGTGTTCTGTGACGTCCTCATGCCA
AAGCTAGCTGATGATAAGGTGGCTGTCCGTCACCACGCCGCCGCCGCCAT
GTCGGCCCTCGTGCGGGCCGCCACGCTGCCGCCGCTCATCGACCCCCTGT
GCGGACGAGGCGGCCTCCGCAGCGCGGCCTGGCGCGCGCGGGAGGGAGCC
ATCCGAGTCTTCATGGCAGGACTTTTGTGGGACGGCACCACCAGCGGTGT
TAGCTGCGCTGCTGGCGGCAGCGGCGCTGGCGGCGGTACCGCCGCCTCCG
GCGCTGAAGATGCAGCACGCGGACGACCGCGCGTCCGGCCGCGGCAGCAG
CTGCCGTCTGCGGCTGAAGAGTCGGGGCGGCGGAAGTATTGCCTTCGATG
CGACCCGAAAGTTGTCGTAACGAGCTTGGGAGCGATGCCAGCGGATTCGC
ACCCGGAGGTGCGAGAGGTGGCTATGGCGGCACTGGCGCTGGTGCAGGCC
GTCTACGGCGACGAAATCGATGTCATACAAACGCTGCAGTCGAAAGGGTA
TTTGAGCTTTGCCTCGACTGCAGCAGCGGGCACCACGGTAAAGGGCGGCG
GTGCCGGGATTACGGCGCGTGCGCAGGCCGAAACGATGTCGGCGCTGCTG
TCGCGCCTGTCGCAGCCGAAGATCGACATGCCGGTCCTGTCAGCCGAAGG
GCTCGTGGAATTCCGACATCGACGGTGCGTTGGCAACGGTGCACTTGGTT
CCGGCGGCGGCGGAGGCGGCGGCAGCGGCGGCGGCGGTGACGAAGCTCGT
GCAAACGGCGCGCAAAGGAACCGGCGGTCGCTTGATCAGGAAGACAGCGC
TCCGAGCGCTAAAGGAGCAGCGAGAGGGGTGGTAGAAGGCGCTGCTGCCG
CTTCTGGCGCCGGGTCGGCGATGCCGACACGCCGGCATTCGGTCGATTCC
TCCGGCAGCCACGCCTCATCTGGAAGGCAACCTGCCGCCGGCGCAGCGGG
CTCAGGTGGCGCTGCCGCCGTCACGCTGCAGCGCCCGGCGTCTGACCACG
CGACGAACGCCCGATTCGGCGTTTCCAATGGCGTGAATGAGGCCGGCCGG
CAGGCTGCAGAGGACTGGCGGGCAAAAACTTGGGGTTTTGAGACGGAAAA
GCTG
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