mRNA_P-wetherbeei_contig16972.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16972.1.1
Unique NamemRNA_P-wetherbeei_contig16972.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A6M4H5U6_9PROT (dTDP-glucose 4,6-dehydratase n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4H5U6_9PROT)

HSP 1 Score: 166 bits (420), Expect = 2.810e-48
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGGHAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR VLA+GR+GE YN+GG AEM+N++VV  LC  LD  RPRDGGH  L+TYV DRPGHDRRYAIDA K+R ELGW+P E+F +GL KTV+WYL +ADWV  + SG YR
Sbjct:  234 AIRAVLAKGRLGEVYNVGGNAEMKNLDVVHALCDTLDRERPRDGGHRKLITYVKDRPGHDRRYAIDARKIRGELGWSPSETFETGLAKTVRWYLGNADWVAQVKSGEYR 342
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BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: UPI0019B2C472 (dTDP-glucose 4,6-dehydratase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B2C472)

HSP 1 Score: 165 bits (418), Expect = 5.340e-48
Identity = 76/109 (69.72%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGGHAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR VLARGR GETYNIGG AE +NIEVV  +C  L  LRPRD G   L+T V DRPGHDRRYAIDATK+RTELGW+P+ESF +GL KTV+WYLD+A WV ++ SG YR
Sbjct:  233 AIRLVLARGRPGETYNIGGNAERRNIEVVNAICDALQALRPRDTGFKRLITSVADRPGHDRRYAIDATKIRTELGWSPRESFETGLAKTVRWYLDNAPWVAEVKSGEYR 341
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BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A521Z9W9_9BURK (dTDP-glucose 4,6-dehydratase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521Z9W9_9BURK)

HSP 1 Score: 165 bits (417), Expect = 7.900e-48
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGGHA--ALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR VLARGR+GETYNIGG  EM N+E+V LLC  LD LRPR  G +    +TYV DRPGHDRRYAIDA K+  ELGWTP+E+FASG+ KT+ WYLDHADWV++I SG YR
Sbjct:  233 AIRTVLARGRLGETYNIGGNNEMTNLEIVHLLCDRLDALRPRRDGQSYRTQITYVPDRPGHDRRYAIDARKIAGELGWTPRETFASGIEKTIAWYLDHADWVENITSGQYR 343
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BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A1F4B0M6_9PROT (dTDP-glucose 4,6-dehydratase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B0M6_9PROT)

HSP 1 Score: 164 bits (414), Expect = 2.220e-47
Identity = 72/110 (65.45%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGG-HAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR+VLARGR+GETYN+GG  EM+NI+VVKL+C+LLD  RPR  G +  L+ +V DRPGHDRRYA+D  K+R ELGW P ESF +GL KTV WYL+H DWV ++ SGAYR
Sbjct:  233 AIREVLARGRVGETYNVGGNCEMRNIDVVKLVCALLDEARPRPSGRYEELIAFVADRPGHDRRYAVDTAKIRGELGWQPAESFETGLRKTVHWYLEHRDWVSEVTSGAYR 342
[Close]
BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: R7KKA0_9BURK (dTDP-glucose 4,6-dehydratase n=2 Tax=Sutterellaceae TaxID=995019 RepID=R7KKA0_9BURK)

HSP 1 Score: 162 bits (410), Expect = 8.390e-47
Identity = 72/110 (65.45%), Postives = 90/110 (81.82%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRP-RDGGHAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR VL  G+IGETYN+GG  E  NI +VK +C++LD +RP RDG +A L+TYV DRPGHDRRYAID+TK++T+LGW PKE F +G+ KTVQWYLDH DWV+++ SGAYR
Sbjct:  234 AIRCVLENGKIGETYNVGGHNERNNITIVKTICAILDEMRPHRDGSYANLITYVKDRPGHDRRYAIDSTKLQTQLGWKPKECFETGIHKTVQWYLDHQDWVKNVQSGAYR 343
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BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A6B3SUJ3_9BURK (dTDP-glucose 4,6-dehydratase n=1 Tax=Noviherbaspirillum galbum TaxID=2709383 RepID=A0A6B3SUJ3_9BURK)

HSP 1 Score: 162 bits (410), Expect = 9.430e-47
Identity = 74/109 (67.89%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGGHAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR+VL  GR+GETYNIGG  E  N+EVV  LC +LD L PR G H  LVTYV DRPGHDRRYAIDA K+  ELGW P E+F SG+ KTVQWYLDH DWV+D+ SGAY+
Sbjct:  233 AIRRVLEAGRVGETYNIGGWNEKTNLEVVHTLCDILDALAPRAGSHRDLVTYVKDRPGHDRRYAIDARKLERELGWKPAETFDSGIRKTVQWYLDHQDWVRDVQSGAYQ 341
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BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A1M3C3U6_9BURK (dTDP-glucose 4,6-dehydratase n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A1M3C3U6_9BURK)

HSP 1 Score: 162 bits (409), Expect = 1.210e-46
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGG--HAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR+VL  GR+GETYN+GG  EM NIE+VKL+C+LLD LRPR  G  +AA +TYVTDRPGHDRRYAIDA K+  EL W P E+FA+G+ KTVQWYLDH +WV  + SGAYR
Sbjct:  233 AIRRVLDAGRLGETYNVGGWNEMPNIEIVKLVCALLDELRPRGDGQPYAAQITYVTDRPGHDRRYAIDARKLERELAWRPAETFATGIRKTVQWYLDHPEWVATVQSGAYR 343
[Close]
BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A1P8FG61_9PROT (dTDP-glucose 4,6-dehydratase n=1 Tax=Betaproteobacteria bacterium GR16-43 TaxID=1904640 RepID=A0A1P8FG61_9PROT)

HSP 1 Score: 161 bits (407), Expect = 2.410e-46
Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGGHAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR+VL  GR+GE YN+GG AE +N+EVV  LC +LD  RPR GGH AL+TYV DRPGHDRRYAID+ K++ ELGW P+ESF +GL KTV+WYLD+A WV ++ SG YR
Sbjct:  234 AIRKVLDGGRVGEVYNVGGNAEKRNLEVVHTLCDILDRERPRAGGHRALITYVADRPGHDRRYAIDSRKLQVELGWRPRESFETGLAKTVRWYLDNAAWVANVKSGEYR 342
[Close]
BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A6M4GPM9_9PROT (dTDP-glucose 4,6-dehydratase n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4GPM9_9PROT)

HSP 1 Score: 161 bits (407), Expect = 2.470e-46
Identity = 71/109 (65.14%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGGHAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR VL RG +GE YN+GG AE +N+EVV  LC +LD  RPR GGH AL+ +VTDRPGHDRRYAID+ K++  LGW P+ESF SGL KTV+WYL HADWV  + SG YR
Sbjct:  234 AIRLVLERGALGEVYNVGGNAERRNLEVVHTLCDILDAERPRSGGHRALIQFVTDRPGHDRRYAIDSRKIQGALGWRPRESFESGLAKTVRWYLGHADWVAQVRSGEYR 342
[Close]
BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Match: A0A839LFH9_9BURK (dTDP-glucose 4,6-dehydratase n=1 Tax=Mitsuaria sp. WAJ17 TaxID=2761452 RepID=A0A839LFH9_9BURK)

HSP 1 Score: 160 bits (406), Expect = 3.320e-46
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:    1 AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGG-HAALVTYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWVQDIASGAYR 327
            AIR VLA GR+GETYNIGG  EM NI++VK +C+LLD LRP   G ++ L+TYV DRPGHDRRYAIDA K+  ELGW P E+FA+G+ KTVQWYLDH +WVQ + SGAYR
Sbjct:  234 AIRAVLAGGRVGETYNIGGWNEMANIDIVKTVCALLDELRPDTAGPYSRLITYVKDRPGHDRRYAIDARKIERELGWRPAETFATGIRKTVQWYLDHPEWVQRVQSGAYR 343
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6M4H5U6_9PROT2.810e-4866.97dTDP-glucose 4,6-dehydratase n=1 Tax=Usitatibacter... [more]
UPI0019B2C4725.340e-4869.72dTDP-glucose 4,6-dehydratase n=1 Tax=Burkholderial... [more]
A0A521Z9W9_9BURK7.900e-4868.47dTDP-glucose 4,6-dehydratase n=1 Tax=Burkholderiac... [more]
A0A1F4B0M6_9PROT2.220e-4765.45dTDP-glucose 4,6-dehydratase n=1 Tax=Betaproteobac... [more]
R7KKA0_9BURK8.390e-4765.45dTDP-glucose 4,6-dehydratase n=2 Tax=Sutterellacea... [more]
A0A6B3SUJ3_9BURK9.430e-4767.89dTDP-glucose 4,6-dehydratase n=1 Tax=Noviherbaspir... [more]
A0A1M3C3U6_9BURK1.210e-4667.57dTDP-glucose 4,6-dehydratase n=2 Tax=Burkholderial... [more]
A0A1P8FG61_9PROT2.410e-4665.14dTDP-glucose 4,6-dehydratase n=1 Tax=Betaproteobac... [more]
A0A6M4GPM9_9PROT2.470e-4665.14dTDP-glucose 4,6-dehydratase n=1 Tax=Usitatibacter... [more]
A0A839LFH9_9BURK3.320e-4667.27dTDP-glucose 4,6-dehydratase n=1 Tax=Mitsuaria sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16972contigP-wetherbeei_contig16972:79..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog748247.AZKH_4230
Preferred namermlB
PFAMsGDP_Man_Dehyd
Model size327
Max annot lvl206389|Rhodocyclales
KEGG rclassRC00402
KEGG koko:K01710
KEGG ReactionR06513
KEGG Pathwayko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130
KEGG ModuleM00793
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.49e-46
EggNOG OGsCOG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2VJAD@28216|Betaproteobacteria,2KV8P@206389|Rhodocyclales
EC4.2.1.46
DescriptionBelongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
Cds size327
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.6446536-CDS-P-wetherbeei_contig16972:78..4051683186103.6446536-CDS-P-wetherbeei_contig16972:78..405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16972 79..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16972.1.1prot_P-wetherbeei_contig16972.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16972 79..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16972.1.1

>prot_P-wetherbeei_contig16972.1.1 ID=prot_P-wetherbeei_contig16972.1.1|Name=mRNA_P-wetherbeei_contig16972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
AIRQVLARGRIGETYNIGGGAEMQNIEVVKLLCSLLDTLRPRDGGHAALV
TYVTDRPGHDRRYAIDATKVRTELGWTPKESFASGLGKTVQWYLDHADWV
QDIASGAYR
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mRNA from alignment at P-wetherbeei_contig16972:79..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16972.1.1 ID=mRNA_P-wetherbeei_contig16972.1.1|Name=mRNA_P-wetherbeei_contig16972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig16972:79..405+ (Phaeothamnion wetherbeei SAG_119_79)
GCGATCCGGCAGGTGCTTGCTCGCGGCAGGATCGGCGAGACCTACAATAT
CGGCGGCGGCGCGGAGATGCAGAACATCGAGGTGGTGAAACTCCTGTGTT
CGCTGCTGGACACGCTGCGGCCTCGCGATGGCGGGCATGCTGCGCTCGTC
ACCTACGTCACCGACCGGCCCGGCCATGACCGCAGGTATGCAATCGATGC
CACGAAGGTCCGTACGGAACTCGGGTGGACGCCGAAGGAAAGCTTCGCCT
CGGGGCTCGGGAAGACGGTCCAGTGGTACCTGGATCATGCCGACTGGGTG
CAGGACATCGCCAGCGGAGCCTACCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16972:79..405+

>mRNA_P-wetherbeei_contig16972.1.1 ID=mRNA_P-wetherbeei_contig16972.1.1|Name=mRNA_P-wetherbeei_contig16972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig16972:79..405+ (Phaeothamnion wetherbeei SAG_119_79)
GCGATCCGGCAGGTGCTTGCTCGCGGCAGGATCGGCGAGACCTACAATAT
CGGCGGCGGCGCGGAGATGCAGAACATCGAGGTGGTGAAACTCCTGTGTT
CGCTGCTGGACACGCTGCGGCCTCGCGATGGCGGGCATGCTGCGCTCGTC
ACCTACGTCACCGACCGGCCCGGCCATGACCGCAGGTATGCAATCGATGC
CACGAAGGTCCGTACGGAACTCGGGTGGACGCCGAAGGAAAGCTTCGCCT
CGGGGCTCGGGAAGACGGTCCAGTGGTACCTGGATCATGCCGACTGGGTG
CAGGACATCGCCAGCGGAGCCTACCGC
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