mRNA_P-wetherbeei_contig16962.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16962.1.1
Unique NamemRNA_P-wetherbeei_contig16962.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.930e-11
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGFLVAV-ARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGDTDYYK 276
            +R G + +LD MRE    L +IL+  G +VL EN +L+EL V+YVPQIGF   +  R G  A              P DF FAF  G+T YYK
Sbjct:  250 IRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLA--------------PDDFTFAFAQGETVYYK 328
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: A0A329SGH8_9STRA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGH8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.090e-7
Identity = 30/91 (32.97%), Postives = 42/91 (46.15%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGFLVAVARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGDTDYY 273
            +R+G +  LDA RE Y  L  +L      V   NP+L  + VQY+PQ+G+++                   SP   PDF F F   DT +Y
Sbjct:  398 IRSGVSETLDAARERYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCE----------------SPTTLPDFVFQFQEDDTTFY 472
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: W2LZG1_PHYPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LZG1_PHYPR)

HSP 1 Score: 55.5 bits (132), Expect = 7.780e-7
Identity = 29/91 (31.87%), Postives = 42/91 (46.15%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGFLVAVARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGDTDYY 273
            +R+G +  LDA R+ Y  L  +L      V   NP+L  + VQY+PQ+G+++                   SP   PDF F F   DT +Y
Sbjct:  379 IRSGISDTLDAARQRYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCE----------------SPTTLPDFVFQFQEDDTTFY 453
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: W2LZF6_PHYPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=24 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LZF6_PHYPR)

HSP 1 Score: 55.5 bits (132), Expect = 7.890e-7
Identity = 29/91 (31.87%), Postives = 42/91 (46.15%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGFLVAVARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGDTDYY 273
            +R+G +  LDA R+ Y  L  +L      V   NP+L  + VQY+PQ+G+++                   SP   PDF F F   DT +Y
Sbjct:  398 IRSGISDTLDAARQRYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCE----------------SPTTLPDFVFQFQEDDTTFY 472
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: A0A7S1U4A1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4A1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.360e-7
Identity = 30/92 (32.61%), Postives = 43/92 (46.74%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGFLVAVARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGDTDYYK 276
            VR G N  LD  R  Y  L  IL      +L+  PL+ E+ V+Y+P +GFLVAV   G                +P +++F F   D  ++K
Sbjct:    7 VREGINEDLDRARSVYEVLDSILSDRAQRILQATPLVQEIRVEYLPHVGFLVAVPDSGVLD------------LIPDNWDFIFKQNDELFFK 86
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: A0A0P1B652_PLAHL (Muts protein homolog 5 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B652_PLAHL)

HSP 1 Score: 55.1 bits (131), Expect = 1.070e-6
Identity = 29/91 (31.87%), Postives = 42/91 (46.15%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGFLVAVARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGDTDYY 273
            +R+G +  LDA RE Y  L  +L      V   NP+L  + VQY+PQ+G+++                   SP   P+F F F   DT +Y
Sbjct:  373 IRSGVSEALDAARERYEDLDNVLTEVAFQVKEANPILSSITVQYIPQVGYVICCD----------------SPTTLPEFVFQFQEDDTTFY 447
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: A0A225W605_9STRA (MUTSd domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W605_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.670e-5
Identity = 32/93 (34.41%), Postives = 40/93 (43.01%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGFLVAVARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGD-TDYYK 276
            +R+G +  LDA RE Y  L  IL      V   NP L  + VQY+PQ+GF++                        PDF F F   D T YYK
Sbjct:  186 IRSGISETLDAARERYEDLDNILTEVAFQVQETNPALSSITVQYIPQVGFVICCEAHTTL----------------PDFVFQFQEDDATFYYK 262
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BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Match: A0A6A6D1M5_9PEZI (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6D1M5_9PEZI)

HSP 1 Score: 51.2 bits (121), Expect = 2.440e-5
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 VRAGCNPQLDAMRETYGRLHEIL-RSAGAVVLRENP-LLDELEVQYVPQIGFLVAVARQGRSAGAAGGAMVPPSPHVPPD--FEFAFGAGDTDYYK 276
            V+ G + +LD +R TY  + ++L R+A  + LR    L+D+L V Y PQIGFL++V +    A        PP+   PP+  +E  FG+    YYK
Sbjct:  399 VQQGIDAELDEIRRTYDGIDDLLSRAAEHIALRVPANLVDQLNVVYFPQIGFLISVMKDVEDA--------PPAHAGPPNDPWEKMFGSPTHAYYK 486
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16962.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FKD9_ECTSI1.930e-1143.01MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
A0A329SGH8_9STRA3.090e-732.97DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
W2LZG1_PHYPR7.780e-731.87DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
W2LZF6_PHYPR7.890e-731.87DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S1U4A1_9STRA8.360e-732.61Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0P1B652_PLAHL1.070e-631.87Muts protein homolog 5 n=1 Tax=Plasmopara halstedi... [more]
A0A225W605_9STRA1.670e-534.41MUTSd domain-containing protein n=1 Tax=Phytophtho... [more]
A0A6A6D1M5_9PEZI2.440e-536.46DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16962contigP-wetherbeei_contig16962:749..1033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FKD9
Preferred nameMSH5
PFAMsMutS_III,MutS_IV,MutS_V
Model size285
Max annot lvl2759|Eukaryota
KEGG koko:K08741
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000712,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007276,GO:0007292,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0048609,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons1
Evalue3.16e-12
EggNOG OGsCOG0249@1|root,KOG0221@2759|Eukaryota
Descriptionchiasma assembly
Cds size285
COG categoryL
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.3264778-CDS-P-wetherbeei_contig16962:748..10331683186103.3264778-CDS-P-wetherbeei_contig16962:748..1033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16962 749..1033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16962.1.1prot_P-wetherbeei_contig16962.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16962 749..1033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16962.1.1

>prot_P-wetherbeei_contig16962.1.1 ID=prot_P-wetherbeei_contig16962.1.1|Name=mRNA_P-wetherbeei_contig16962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
VRAGCNPQLDAMRETYGRLHEILRSAGAVVLRENPLLDELEVQYVPQIGF
LVAVARQGRSAGAAGGAMVPPSPHVPPDFEFAFGAGDTDYYKVR*
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mRNA from alignment at P-wetherbeei_contig16962:749..1033+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16962.1.1 ID=mRNA_P-wetherbeei_contig16962.1.1|Name=mRNA_P-wetherbeei_contig16962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig16962:749..1033+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGCGCCGGCTGCAACCCGCAGCTTGACGCCATGCGGGAGACGTATGG
GCGGCTCCACGAGATCCTCCGGTCTGCCGGGGCGGTGGTGCTCCGCGAGA
ACCCGCTGCTGGATGAGCTGGAGGTCCAGTACGTCCCACAGATCGGCTTT
CTGGTGGCCGTTGCACGGCAGGGCAGATCTGCCGGGGCGGCAGGCGGGGC
GATGGTGCCACCGTCGCCGCACGTGCCACCGGACTTTGAATTTGCCTTCG
GGGCCGGCGATACCGACTACTATAAAGTGCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16962:749..1033+

>mRNA_P-wetherbeei_contig16962.1.1 ID=mRNA_P-wetherbeei_contig16962.1.1|Name=mRNA_P-wetherbeei_contig16962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig16962:749..1033+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGCGCCGGCTGCAACCCGCAGCTTGACGCCATGCGGGAGACGTATGG
GCGGCTCCACGAGATCCTCCGGTCTGCCGGGGCGGTGGTGCTCCGCGAGA
ACCCGCTGCTGGATGAGCTGGAGGTCCAGTACGTCCCACAGATCGGCTTT
CTGGTGGCCGTTGCACGGCAGGGCAGATCTGCCGGGGCGGCAGGCGGGGC
GATGGTGCCACCGTCGCCGCACGTGCCACCGGACTTTGAATTTGCCTTCG
GGGCCGGCGATACCGACTACTATAAAGTGCGTTGA
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