mRNA_P-wetherbeei_contig16950.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16950.1.1
Unique NamemRNA_P-wetherbeei_contig16950.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: A0A836CLK3_9STRA (Phosphoribulokinase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.550e-6
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  479 QVSVLEMDGQFDNLQELIYVESHLSNIG 562
            +VSVLEMDGQFDNLQELIYVESHLSNIG
Sbjct:  332 EVSVLEMDGQFDNLQELIYVESHLSNIG 359
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: D8LBI0_ECTSI (Phosphoribulokinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI0_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-6
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  479 QVSVLEMDGQFDNLQELIYVESHLSNIG 562
            +VSV+EMDGQFDNLQELIYVESHLSNIG
Sbjct:  351 EVSVIEMDGQFDNLQELIYVESHLSNIG 378
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: A0A7S2Y062_9STRA (Phosphoribulokinase n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S2Y062_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.310e-5
Identity = 23/28 (82.14%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  479 QVSVLEMDGQFDNLQELIYVESHLSNIG 562
            +VSV+EMDGQFDNLQEL+YVESH+SN+G
Sbjct:  336 EVSVVEMDGQFDNLQELVYVESHMSNVG 363
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: A0A7S2S7M2_9STRA (Phosphoribulokinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7M2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.450e-5
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  479 QVSVLEMDGQFDNLQELIYVESHLSNIG 562
            +VSVLEMDG+FDNLQELIYVESHLSN G
Sbjct:  161 EVSVLEMDGKFDNLQELIYVESHLSNTG 188
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: A0A7S2BD78_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BD78_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.730e-5
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:  479 QVSVLEMDGQFDNLQELIYVESHLSN 556
            +VSVLEMDG+FDNLQELIYVESHLSN
Sbjct:   49 EVSVLEMDGKFDNLQELIYVESHLSN 74
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: A0A078HFG0_BRANA (Phosphoribulokinase, chloroplastic n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078HFG0_BRANA)

HSP 1 Score: 53.9 bits (128), Expect = 2.810e-5
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  455 LPLLNSCIQVSVLEMDGQFDNLQELIYVESHLSNI 559
            L +L S  QVSV+EMDGQFD L ELIYVESHLSN+
Sbjct:  228 LSILFSLFQVSVVEMDGQFDRLDELIYVESHLSNL 262
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: Q3ZDJ0_PICAB (Phosphoribulokinase (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=Q3ZDJ0_PICAB)

HSP 1 Score: 52.0 bits (123), Expect = 3.320e-5
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 2 
Query:  479 QVSVLEMDGQFDNLQELIYVESHLSNI 559
            +VSVLEMDGQFD L+ELIYVESHLSNI
Sbjct:   67 EVSVLEMDGQFDRLEELIYVESHLSNI 93
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: A0A444CYP6_ENSVE (Uncharacterized protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444CYP6_ENSVE)

HSP 1 Score: 52.8 bits (125), Expect = 3.790e-5
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 2 
Query:  464 LNSCI--QVSVLEMDGQFDNLQELIYVESHLSNI 559
            L  C+  QVSVLEMDGQFD L ELIYVESHLSN+
Sbjct:  116 LRGCVHGQVSVLEMDGQFDRLDELIYVESHLSNL 149
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: G0TE76_LEAAL (Phosphoribulokinase (Fragment) n=1 Tax=Leavenworthia alabamica TaxID=310722 RepID=G0TE76_LEAAL)

HSP 1 Score: 50.4 bits (119), Expect = 5.780e-5
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:  479 QVSVLEMDGQFDNLQELIYVESHLSNI 559
            +VSVLEMDGQFD L ELIYVESHLSN+
Sbjct:   62 EVSVLEMDGQFDRLDELIYVESHLSNL 88
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BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Match: A0A1E5VDC5_9POAL (Phosphoribulokinase n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VDC5_9POAL)

HSP 1 Score: 53.1 bits (126), Expect = 5.800e-5
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:  434 SYRFMSFLPLLNSCIQVSVLEMDGQFDNLQELIYVESHLSNI 559
            SY F ++      C +VSVLEMDGQFD L ELIYVESHLSN+
Sbjct:  299 SYGFGTYF-----CHEVSVLEMDGQFDKLDELIYVESHLSNL 335
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16950.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A836CLK3_9STRA1.550e-696.43Phosphoribulokinase n=2 Tax=Tribonema minus TaxID=... [more]
D8LBI0_ECTSI2.910e-692.86Phosphoribulokinase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2Y062_9STRA1.310e-582.14Phosphoribulokinase n=2 Tax=Eukaryota TaxID=2759 R... [more]
A0A7S2S7M2_9STRA1.450e-589.29Phosphoribulokinase n=1 Tax=Rhizochromulina marina... [more]
A0A7S2BD78_9STRA1.730e-592.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A078HFG0_BRANA2.810e-574.29Phosphoribulokinase, chloroplastic n=1 Tax=Brassic... [more]
Q3ZDJ0_PICAB3.320e-588.89Phosphoribulokinase (Fragment) n=1 Tax=Picea abies... [more]
A0A444CYP6_ENSVE3.790e-576.47Uncharacterized protein n=2 Tax=Ensete ventricosum... [more]
G0TE76_LEAAL5.780e-585.19Phosphoribulokinase (Fragment) n=1 Tax=Leavenworth... [more]
A0A1E5VDC5_9POAL5.800e-564.29Phosphoribulokinase n=1 Tax=Dichanthelium oligosan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16950contigP-wetherbeei_contig16950:93..654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBI0
Preferred namePRK
PFAMsPRK
Model size562
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00855
KEGG ReactionR01523
KEGG Pathwayko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG ModuleM00165,M00166
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004849,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008655,GO:0008974,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010319,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034404,GO:0034641,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043174,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046983,GO:0048046,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097718,GO:0098542,GO:0099080,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons1
Evalue7.66e-08
EggNOG OGsCOG0572@1|root,KOG4203@2759|Eukaryota
EC2.7.1.19
DescriptionUMP salvage
Cds size354
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.1784563-UTR-P-wetherbeei_contig16950:92..3001683186103.1784563-UTR-P-wetherbeei_contig16950:92..300Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16950 93..300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.191939-CDS-P-wetherbeei_contig16950:300..6541683186103.191939-CDS-P-wetherbeei_contig16950:300..654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16950 301..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16950.1.1prot_P-wetherbeei_contig16950.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16950 301..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16950.1.1

>prot_P-wetherbeei_contig16950.1.1 ID=prot_P-wetherbeei_contig16950.1.1|Name=mRNA_P-wetherbeei_contig16950.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MRMGRPAGMKQLLASERAAGIVRLAVELPGSRMWSVRSSEDFELCCISSN
ILGSSPLCGKAPISDGFSSLVSHDQSYRFMSFLPLLNSCIQVSVLEMDGQ
FDNLQELIYVESHLSNIG
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mRNA from alignment at P-wetherbeei_contig16950:93..654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16950.1.1 ID=mRNA_P-wetherbeei_contig16950.1.1|Name=mRNA_P-wetherbeei_contig16950.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=562bp|location=Sequence derived from alignment at P-wetherbeei_contig16950:93..654+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCTTGTAGGGTTTCCCTTGTAGGGTTTCCCTTGTAGGGTTTCCCTTGT
AGGGTTTCCCTTGTAGGGTTTCCCTTGTAGGGTTTCCCTTGTAGGGTTTC
CCCTTGAAGGTGTGTACATTGGGCTGAACGGACTTTTTCCTTCATGTCGG
GTTGTGTAGGCAAACTAGCTTGGTGGAAACGGAATTGCCGGTTGACTATC
GCCAGCAGATGAGGATGGGCCGTCCTGCTGGCATGAAGCAGCTGTTAGCA
AGTGAAAGAGCTGCTGGGATTGTGAGGTTGGCTGTTGAGTTGCCGGGTAG
CAGGATGTGGAGCGTGAGGTCTTCTGAGGACTTCGAGCTTTGTTGCATTT
CATCAAATATCTTAGGTTCCTCTCCCTTGTGCGGAAAGGCGCCCATTAGT
GATGGCTTCTCGTCTTTGGTCTCTCACGACCAAAGCTACCGTTTCATGTC
CTTCCTCCCGCTTCTTAACTCCTGTATTCAGGTTTCCGTGCTGGAGATGG
ACGGGCAGTTCGACAACTTGCAGGAACTCATCTACGTGGAGAGCCACCTG
TCGAACATCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16950:93..654+

>mRNA_P-wetherbeei_contig16950.1.1 ID=mRNA_P-wetherbeei_contig16950.1.1|Name=mRNA_P-wetherbeei_contig16950.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig16950:93..654+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGATGGGCCGTCCTGCTGGCATGAAGCAGCTGTTAGCAAGTGAAAG
AGCTGCTGGGATTGTGAGGTTGGCTGTTGAGTTGCCGGGTAGCAGGATGT
GGAGCGTGAGGTCTTCTGAGGACTTCGAGCTTTGTTGCATTTCATCAAAT
ATCTTAGGTTCCTCTCCCTTGTGCGGAAAGGCGCCCATTAGTGATGGCTT
CTCGTCTTTGGTCTCTCACGACCAAAGCTACCGTTTCATGTCCTTCCTCC
CGCTTCTTAACTCCTGTATTCAGGTTTCCGTGCTGGAGATGGACGGGCAG
TTCGACAACTTGCAGGAACTCATCTACGTGGAGAGCCACCTGTCGAACAT
CGGC
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