mRNA_P-wetherbeei_contig16949.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16949.2.1
Unique NamemRNA_P-wetherbeei_contig16949.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A182HDZ7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HDZ7_AEDAL)

HSP 1 Score: 200 bits (509), Expect = 1.130e-55
Identity = 152/392 (38.78%), Postives = 205/392 (52.30%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR--LGPSSRQRHPPSPKA-----KQKHIWPQTKWQQLEQAYRRLVQIPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGPLKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYM 1155
            KWVYKTK   +  ++R+KARLV +G+SQ  G+DYDE  T+SPVVRH++LR   F+      L          F        +Y+      + P  RQ      KA     +   +W  TK   L+ A ++L     LH   S+ DPCLY     +GKV+F V +YVDD+LI        +  KA +S  F MKDLG     LG+ IT    SVS+ Q+ YID ML+ ++M         P    ++L+K   P  PEE+  M+ I Y+ AVG L+YL   TR D+   V  LSR      P HW AV+   +Y+ GTK  +L    +   G  KL+GYSD+DWA D D RRS +GY F+L         GA+S   + Q TV+LS+ EAEYM
Sbjct:   64 KWVYKTKHDASGKVDRYKARLVIKGYSQRKGVDYDE--TYSPVVRHSSLRY-LFAMAAKYNLQVDQMDAITAFLQGDIEEEIYMEQPPCFVKPGGRQLVCRLNKALYGLKQSSRVW-NTK---LDAALKKLG----LHQ--SEFDPCLYY-WIEDGKVLF-VAVYVDDVLIFSNDAALKNNLKAKLSSTFRMKDLGSAVSCLGIRITRAKGSVSLDQEAYIDSMLRRFNMQDAKTVST-PMNTAEKLSKEMSPNTPEETERMKNIPYQEAVGCLMYLAQCTRPDILFTVNLLSRFNCCYGPKHWEAVKHLFRYLKGTKTIRLK---YSAAGDSKLVGYSDADWASDLDDRRSKSGYVFLLQ-------GGAVSWCCKRQSTVSLSTCEAEYM 429          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A6A2WRB0_HIBSY (Putative Cation/H+ exchanger 4 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WRB0_HIBSY)

HSP 1 Score: 202 bits (515), Expect = 5.870e-54
Identity = 159/399 (39.85%), Postives = 215/399 (53.88%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR-------LGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQA----YRRLVQ-IPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGP-LKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVYK K  P+ +IER+KARLVARGFSQ  GLDYDE  T SPV + TT+R           LA   N   N ++   +   L+   DR       +G  S Q HP      +K ++       L+QA    Y ++V+ + K+  + + AD  L+ + ++ GK+  IV +YVDDL+IT     +I   K N+S+ F MK+LG LK+ LG+E+      + + Q+KY  D+LK + M  C   K    P    +          E   M    YRH VG L+YLT+ TR D+S  V  +SR+M NP   H  AVR  ++YV  T    +  G    +G   KL+GY D+D+AGD DTRRSTTGY F LG       SG IS  S+ QPTV+LS+TEAEY A
Sbjct: 2304 KWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDE--TFSPVAKLTTVRVL---------LALADNKDWNLWQMDVKNAFLHGELDREIYMTQPMGFQS-QDHPEYMCKLRKALYG------LKQAPRAWYGKIVEFLTKIGYSVTPADSSLFVK-ANEGKLA-IVLVYVDDLIITSDDEAEILQTKENLSVRFQMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKRFGMLEC---KSTSTPMEPNIKMCAHEGKDLEDATM----YRHLVGSLIYLTL-TRPDISYAVGVMSRYMQNPKKPHLEAVRRILRYVKNT----IDYGLLYKKGEDCKLVGYCDADYAGDHDTRRSTTGYVFKLG-------SGTISWCSKRQPTVSLSTTEAEYRA 2663          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A1W7R6K6_AEDAL (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=4 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6K6_AEDAL)

HSP 1 Score: 202 bits (513), Expect = 9.170e-54
Identity = 150/410 (36.59%), Postives = 207/410 (50.49%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLR---------------ARCFSSCRPSQLASP------PNGR*NRFKSSPRRNC-LYVATDRLGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQAYRRLVQIPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDR--SVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGPLKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWV+K K  PN  ++ +KARLV +G SQ PG+DYDE   ++PVVR++TLR                   ++    +L         P G    F + P + C L  +   L  SSR             IW Q    QL++  R      +     S  DPCLY  +  NG+ V  + +YVDD LI        +  K  +   F MKDLG  KY LG++I+       +SI Q+KYI+D+L  +++  C H    P  + +RL K+  P    E   M+++ Y+ AVG L Y+   TR D+S  V  +S+  SNP   HW AV+   +Y+ GT   +L    F   G  ++IGY+D+DW GD D+RRSTTGY F+          GAIS N + QPTVALSS EAEYMA
Sbjct:  897 KWVFKIKRGPNGEVDCYKARLVVKGCSQRPGIDYDE--VYAPVVRYSTLRYLMALAVKFDLEIDQMDAVTAFLQGKLEDEVIHMQQPEG----FVTDPTKVCRLQRSLYGLKQSSR-------------IWNQ----QLDKTLR------EFGLQQSRTDPCLY--YLINGRRVLFITIYVDDFLIFTNDAKMREQLKTFLCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLADC-HPVSTPFESSERLDKSMTPKSQNEMEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRIFRYLKGTINNRLL---FNKRGNGEIIGYTDADWGGDVDSRRSTTGYVFMFQ-------GGAISWNVKRQPTVALSSCEAEYMA 1264          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A6A2ZHK8_HIBSY (Abscisic acid 8'-hydroxylase 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZHK8_HIBSY)

HSP 1 Score: 202 bits (513), Expect = 9.680e-54
Identity = 158/399 (39.60%), Postives = 213/399 (53.38%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR-------LGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQA----YRRLVQ-IPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGP-LKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVYK K  P+ +IER+KARLVARGFSQ  GLDYDE  T SPV + TT+R           LA   N   N +K   +   L+   DR       +G  S Q HP      +K ++       L+QA    Y ++ + + K   + + AD  L+ + ++ GK+  IV +YVDDL+ITG    +I   K N+S+ F MK+LG LK+ LG+E+      + + Q+KY  D+LK + M  C   K    P    +         E  +      YR  VG L+YLT+ TR D+S  V  +SR+M NP   H  AVR  ++YV  T    +  G    +G   KL+GY D+D+AGD DTRRSTTGY F LG       SG IS  S+ QPTV+LS+TEAEY A
Sbjct: 1073 KWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDE--TFSPVAKLTTVRVL---------LALAANKDWNLWKMDVKNAFLHGELDREIYMTQPMGFQS-QDHPEYVCKLRKALYG------LKQAPRAWYGKIAEFLTKSGYSVTHADSSLFVK-ANEGKLA-IVLVYVDDLIITGDEEAEILQTKENLSVRFQMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKRFGMLEC---KSTSTPMEPNIKMCAH----EGKVLEDATMYRQLVGSLIYLTL-TRLDISYAVGVMSRYMQNPKKPHLEAVRRILRYVKNT----IDYGLLYKKGEDCKLVGYCDADYAGDHDTRRSTTGYVFKLG-------SGTISWCSKRQPTVSLSTTEAEYRA 1432          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A6A3A2M5_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A2M5_HIBSY)

HSP 1 Score: 201 bits (512), Expect = 1.160e-53
Identity = 158/399 (39.60%), Postives = 215/399 (53.88%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR-------LGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQA----YRRLVQ-IPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGP-LKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVYK K  P+ +IER+KARLVARGFSQ  GLDYDE  T SPV + TT+R           LA   N   N ++   +   L+   DR       +G  S Q HP      +K ++       L+QA    Y ++V+ + K   + + AD  L+ + ++ GK+  IV +YVDDL+ITG    +I   K N+S+ F MK+LG LK+ LG+E+      + + Q+KY  D+LK + M  C   K    P    +    +     E   M    YR  VG L+YLT+ TR D+S  V  +SR+M NP   H  AVR  ++YV  T    ++ G    +G   K +GY D+D+AGD DTRRSTTGY F LG       SG IS  S+ QPTV+LS+TEAEY A
Sbjct:  721 KWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDE--TFSPVAKLTTVRVL---------LALAANKDWNLWQMDVKNAFLHGELDREIYMTQPMGFQS-QDHPEYVCKLRKALYG------LKQAPRAWYGKIVEFLTKSGYSVTPADSSLFVK-ANEGKLA-IVLVYVDDLIITGDNEAEILQTKENLSVRFQMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKRFGMLEC---KSTSTPMEPNIKMCAYEGKDLEDATM----YRQLVGSLIYLTL-TRPDISYAVGVMSRYMQNPKKPHLEAVRRILRYVKNT----INYGLLYNKGEDCKFVGYCDADYAGDHDTRRSTTGYVFKLG-------SGTISWCSKRQPTVSLSTTEAEYRA 1080          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A6A3AQC6_HIBSY (Uncharacterized protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AQC6_HIBSY)

HSP 1 Score: 199 bits (505), Expect = 1.060e-52
Identity = 158/399 (39.60%), Postives = 213/399 (53.38%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR-------LGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQA----YRRLVQ-IPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGP-LKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVYK K  P+ +IER+KARLVARGFSQ  GLDYDE  T SPV + TT+R           LA   N   N ++   +   L+   DR       +G  S Q HP      +K ++       L+QA    Y ++ + + K   + + AD  L+ + ++ GK+  IV +YVDDL+ITG    +I   K N+S+ F MK+LG LK+ LG+E+      + + Q+KY  D+LK + M  C   K    P    +          E   M    YR  VG L+YLT+ TR D+S  V  +SR+M NP   H  AVR  ++YV  T    +  G    +G   KL+GY D+D+AGD DTRRSTTGY F LG       SG IS  S+ QPTV+LS+TEAEY A
Sbjct:  897 KWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDE--TFSPVAKLTTVRVL---------LALAANKDWNLWQMDVKNAFLHGELDREIYMTQPMGFQS-QDHPEYVCKLRKALYG------LKQAPRAWYGKIAEFLTKSGYSVTPADSSLFVK-ANEGKLA-IVLVYVDDLIITGDDEAEILQTKENLSVRFQMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKRFGMLEC---KSTSTPMEPNIKMCAHEGKDLEDATM----YRQLVGSLIYLTL-TRPDISYAVGVMSRYMQNPKKPHLEAVRRILRYVKNT----IDYGLLYKKGEDCKLVGYCDADYAGDHDTRRSTTGYVFKLG-------SGTISWCSKRQPTVSLSTTEAEYRA 1256          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A6A3C9Q1_HIBSY (Indole-3-acetic acid-amido synthetase GH3.17 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C9Q1_HIBSY)

HSP 1 Score: 199 bits (505), Expect = 1.140e-52
Identity = 158/399 (39.60%), Postives = 213/399 (53.38%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR-------LGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQA----YRRLVQ-IPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGP-LKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVYK K  P+ +IER+KARLVARGFSQ  GLDYDE  T SPV + TT+R           LA   N   N ++   +   L+   DR       +G  S Q HP      +K ++       L+QA    Y ++ + + K   + + AD  L+ + ++ GK+  IV +YVDDL+ITG    +I   K N+S+ F MK+LG LK+ LG+E+      + + Q+KY  D+LK + M  C   K    P    +          E   M    YR  VG L+YLT+ TR D+S  V  +SR+M NP   H  AVR  ++YV  T    +  G    +G   KL+GY D+D+AGD DTRRSTTGY F LG       SG IS  S+ QPTV+LS+TEAEY A
Sbjct: 1169 KWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDE--TFSPVAKLTTVRVL---------LALAANKDWNLWQMDVKNAFLHGELDREIYMTQPMGFQS-QDHPEYVCKLRKALYG------LKQAPRAWYGKIAEFLTKSGYSVTPADSSLFVK-ANEGKLA-IVLVYVDDLIITGDDEAEILQTKENLSVRFQMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKRFGMLEC---KSTSTPMEPNIKMCAHEGKDLEDATM----YRQLVGSLIYLTL-TRPDISYAVGVMSRYMQNPKKPHLEAVRRILRYVKNT----IDYGLLYKKGEDCKLVGYCDADYAGDHDTRRSTTGYVFKLG-------SGTISWCSKRQPTVSLSTTEAEYRA 1528          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A6A3BE59_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BE59_HIBSY)

HSP 1 Score: 198 bits (503), Expect = 1.950e-52
Identity = 157/399 (39.35%), Postives = 213/399 (53.38%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR-------LGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQA----YRRLVQ-IPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGP-LKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVYK K  P+ +IER+KARLVARGFSQ  GLDYDE  T SPV + TT+R           LA   N   N ++   +   L+   DR       +G  S+  H    K + K ++       L+QA    Y ++ + + K   + + AD  L+ + ++ GK+  IV +YVDDL+ITG    +I   K N+S+ F MK+LG LK+ LG+E+      + + Q+KY  D+LK + M  C   K    P    +          E   M    YR  VG L+YLT+ TR D+S  V  +SR+M NP   H  AVR  ++YV  T    +  G    +G   KL+GY D+D+AGD DTRRSTTGY F LG       SG IS  S+ QPTV+LS+TEAEY A
Sbjct:  897 KWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDE--TFSPVAKLTTVRVL---------LALAANKDWNLWQMDVKNAFLHGELDREIYMTQPMGFQSQDHHEYVCKLR-KALYG------LKQAPRAWYGKIAEFLTKSGYSVTPADSSLFVK-ANEGKLA-IVLVYVDDLIITGDDEAEILQTKENLSVRFQMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKRFGMLEC---KSTSTPMEPNIKMCAHEGKDLEDATM----YRQLVGSLIYLTL-TRPDISYAVGVMSRYMQNPKKPHLEAVRRILRYVKNT----IDYGLLYKKGEDCKLVGYCDADYAGDHDTRRSTTGYVFKLG-------SGTISWCSKRQPTVSLSTTEAEYRA 1256          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: A0A6A3D667_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D667_HIBSY)

HSP 1 Score: 197 bits (502), Expect = 2.390e-52
Identity = 157/399 (39.35%), Postives = 213/399 (53.38%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDR-------LGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQA----YRRLVQ-IPKLHATPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGP-LKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVYK K  P+ +I+R+KARLVARGFSQ  GLDYDE  T SPV + TT+R           LA   N   N ++   +   L+   DR       +G  S Q HP      +K ++       L+QA    Y ++ + + K   + + AD  L+ + ++ GK+  IV +YVDDL+ITG    +I   K N+S+ F MK+LG LK+ LG+E+      + + Q+KY  D+LK + M  C   K    P    +          E   M    YR  VG L+YLT+ TR D+S  V  +SR+M NP   H  AVR  ++YV  T    +  G    +G   KL+GY D+D+AGD DTRRSTTGY F LG       SG IS  S+ QPTV+LS+TEAEY A
Sbjct:  720 KWVYKIKRCPDGSIKRYKARLVARGFSQQYGLDYDE--TFSPVAKLTTVRVL---------LALAANKDWNLWQMDVKNAFLHGELDREIYMTQPMGFQS-QDHPEYVCKLRKALYG------LKQAPRAWYGKIAEFLTKSGYSVTPADSSLFVK-ANEGKLA-IVLVYVDDLIITGDDEAEILQTKENLSVRFQMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKRFGMLEC---KSTSTPMEPNIKMCAHEGKDLEDATM----YRQLVGSLIYLTL-TRPDISYAVGVMSRYMQNPKKPHLEAVRRILRYVKNT----IDYGLLYKKGEDCKLVGYCDADYAGDHDTRRSTTGYVFKLG-------SGTISWCSKRQPTVSLSTTEAEYRA 1079          
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Match: UPI001028384D (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001028384D)

HSP 1 Score: 190 bits (482), Expect = 3.860e-52
Identity = 144/401 (35.91%), Postives = 214/401 (53.37%), Query Frame = 1
Query:    1 KWVYKTKMLPNNTIERFKARLVARGFSQVPGLDYDESMTHSPVVRHTTLRARCFSSCRPSQLASPPNGR*NRFKSSPRRNCLYVATDRLGPSSRQRHPPSPKAKQKHIWPQTKWQQLEQAYRRLVQIP-----KLHA-------TPSDADPCLYRRHSSNGKVVFIVCLYVDDLLITGPTLTDIDAFKANISLAFPMKDLGVLKYLLGMEITFGDRS---VSISQKKYIDDMLKIYDMHHCTHFKELPAPAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGPLKLIGYSDSDWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEYMA 1158
            KWVY+ K+  +++  ++KARLVA+GF Q  G+D+DE    SPVV+ TTLR  CF +     L +  +   ++          ++  D L      + P     K K  W      QL ++   L Q P     K H          S+ D CLY + + +G  + ++ LYVDD+LI G  L +I A K+ ++ +F MKD+G   ++LGM I   DRS   + +SQ +YID +L+ ++M        +P P   +L+K   P+  EE   M +I Y  AVG L+Y  + TR D++  V  +SR+MSNP   HW AV+  ++Y+  TK+ ++  G       L + G++DSD+AGD D RRST+GY F L         GA+S  SRLQ  V  S+TEAEY+A
Sbjct:   17 KWVYRYKITAHDSQPKYKARLVAKGFKQEQGIDFDE--VFSPVVKMTTLR--CFLA-----LVAILDLVLHQMDVK----TAFLHGD-LDVEIYMQQPEGFVEKGKEDWVC----QLLKSLYGLKQSPRAWYHKFHKFMLSQGYKRSEFDHCLYTKKAKDGSWLILI-LYVDDMLIAGKHLEEISALKSKMAKSFDMKDMGEASHILGMRIE-RDRSKKLIWLSQTEYIDKVLQRFNMEKGKALS-VPLPPYVKLSKQDCPVSEEEQAEMDKIPYASAVGSLMYAMIATRPDIAFAVGVVSRYMSNPGKKHWEAVKGILRYLKATKSMRICYG----SQELSVKGFTDSDYAGDLDNRRSTSGYVFTLA-------GGAVSWRSRLQDCVTQSTTEAEYVA 385          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16949.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182HDZ7_AEDAL1.130e-5538.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A2WRB0_HIBSY5.870e-5439.85Putative Cation/H+ exchanger 4 n=2 Tax=Hibiscus sy... [more]
A0A1W7R6K6_AEDAL9.170e-5436.59Putative retrovirus-related pol polyprotein from t... [more]
A0A6A2ZHK8_HIBSY9.680e-5439.60Abscisic acid 8'-hydroxylase 1 n=1 Tax=Hibiscus sy... [more]
A0A6A3A2M5_HIBSY1.160e-5339.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3AQC6_HIBSY1.060e-5239.60Uncharacterized protein n=2 Tax=Hibiscus syriacus ... [more]
A0A6A3C9Q1_HIBSY1.140e-5239.60Indole-3-acetic acid-amido synthetase GH3.17 n=1 T... [more]
A0A6A3BE59_HIBSY1.950e-5239.35Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3D667_HIBSY2.390e-5239.35Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
UPI001028384D3.860e-5235.91Ty1/Copia family RNAse HI domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16949contigP-wetherbeei_contig16949:315..1472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4096.XP_009787759.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve,zf-CCHC
Model size1158
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-36
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
DescriptionMitochondrial protein
Cds size606
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.0044327-UTR-P-wetherbeei_contig16949:314..8661683186103.0044327-UTR-P-wetherbeei_contig16949:314..866Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16949 315..866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.0152638-CDS-P-wetherbeei_contig16949:866..14721683186103.0152638-CDS-P-wetherbeei_contig16949:866..1472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16949 867..1472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16949.2.1prot_P-wetherbeei_contig16949.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16949 867..1472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16949.2.1

>prot_P-wetherbeei_contig16949.2.1 ID=prot_P-wetherbeei_contig16949.2.1|Name=mRNA_P-wetherbeei_contig16949.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
MKDLGVLKYLLGMEITFGDRSVSISQKKYIDDMLKIYDMHHCTHFKELPA
PAGQRLTKAPFPLPPEESLAMREIKYRHAVGHLLYLTMVTRFDLSNVVRE
LSRHMSNPSPTHWGAVRWCMKYVSGTKAKKLHLGPFPCEGPLKLIGYSDS
DWAGDTDTRRSTTGYAFVLGTSADQICSGAISVNSRLQPTVALSSTEAEY
MA
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mRNA from alignment at P-wetherbeei_contig16949:315..1472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16949.2.1 ID=mRNA_P-wetherbeei_contig16949.2.1|Name=mRNA_P-wetherbeei_contig16949.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig16949:315..1472+ (Phaeothamnion wetherbeei SAG_119_79)
AAATGGGTGTACAAAACCAAAATGTTGCCAAACAACACCATTGAGCGCTT CAAAGCCCGCTTAGTTGCCCGTGGCTTCTCCCAAGTACCCGGTCTAGACT ATGATGAATCAATGACCCATTCCCCGGTTGTACGTCACACCACTCTCCGA GCGCGCTGTTTTAGCTCATGCCGCCCAAGCCAACTGGCCAGTCCACCAAA TGGACGTTAAAACCGCTTTAAAAGCTCCCCTAGACGAAACTGTCTATATG TCGCCACCGACAGGCTGGGCCCGTCCAGCCGTCAACGGCATCCGCCAAGT CCTAAAGCTAAACAAAAGCATATATGGCCTCAAACAAAGTGGCAACAACT GGAACAGGCATATCGACGCCTGGTTCAAATCCCAAAGCTTCACGCCACGC CAAGTGATGCTGACCCGTGCCTGTACCGCCGGCACTCCTCCAATGGAAAA GTCGTCTTTATAGTCTGCCTCTATGTCGACGACCTTCTCATAACCGGACC CACCCTTACGGACATTGATGCCTTCAAAGCAAACATCAGCCTCGCTTTCC CCATGAAAGATTTAGGTGTCCTAAAATACCTCCTAGGCATGGAAATCACC TTTGGTGATAGAAGTGTCTCCATCTCCCAAAAGAAATACATTGACGACAT GCTCAAAATATACGACATGCATCACTGTACCCACTTTAAGGAGCTTCCGG CCCCAGCCGGCCAGCGGCTGACCAAAGCCCCTTTCCCCCTACCGCCCGAG GAATCCCTTGCCATGCGCGAAATCAAATATCGCCATGCTGTCGGTCACCT GCTGTACCTTACCATGGTGACCCGCTTCGACCTCTCAAACGTCGTCCGTG AACTTTCCAGACATATGTCTAACCCTAGCCCCACCCACTGGGGCGCCGTC CGCTGGTGCATGAAGTACGTCAGCGGCACCAAAGCCAAGAAATTACACCT TGGCCCCTTCCCCTGTGAAGGCCCACTAAAACTCATTGGCTACAGCGACT CCGACTGGGCCGGTGACACGGACACCCGACGTTCTACTACGGGCTACGCT TTTGTCCTCGGAACTTCCGCAGACCAAATCTGCAGTGGCGCTATCAGCGT CAACTCCCGCCTGCAACCAACTGTTGCCCTTTCTAGCACGGAGGCGGAAT ACATGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16949:315..1472+

>mRNA_P-wetherbeei_contig16949.2.1 ID=mRNA_P-wetherbeei_contig16949.2.1|Name=mRNA_P-wetherbeei_contig16949.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig16949:315..1472+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGATTTAGGTGTCCTAAAATACCTCCTAGGCATGGAAATCACCTT
TGGTGATAGAAGTGTCTCCATCTCCCAAAAGAAATACATTGACGACATGC
TCAAAATATACGACATGCATCACTGTACCCACTTTAAGGAGCTTCCGGCC
CCAGCCGGCCAGCGGCTGACCAAAGCCCCTTTCCCCCTACCGCCCGAGGA
ATCCCTTGCCATGCGCGAAATCAAATATCGCCATGCTGTCGGTCACCTGC
TGTACCTTACCATGGTGACCCGCTTCGACCTCTCAAACGTCGTCCGTGAA
CTTTCCAGACATATGTCTAACCCTAGCCCCACCCACTGGGGCGCCGTCCG
CTGGTGCATGAAGTACGTCAGCGGCACCAAAGCCAAGAAATTACACCTTG
GCCCCTTCCCCTGTGAAGGCCCACTAAAACTCATTGGCTACAGCGACTCC
GACTGGGCCGGTGACACGGACACCCGACGTTCTACTACGGGCTACGCTTT
TGTCCTCGGAACTTCCGCAGACCAAATCTGCAGTGGCGCTATCAGCGTCA
ACTCCCGCCTGCAACCAACTGTTGCCCTTTCTAGCACGGAGGCGGAATAC
ATGGCC
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