mRNA_P-wetherbeei_contig16938.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16938.2.1
Unique NamemRNA_P-wetherbeei_contig16938.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A6I3EWX3_9ACTN (Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A6I3EWX3_9ACTN)

HSP 1 Score: 211 bits (537), Expect = 1.730e-67
Identity = 104/132 (78.79%), Postives = 121/132 (91.67%), Query Frame = 1
Query:  169 VTVFFDTSAVLALHVDTPARAVALAALEPGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVST 564
            ++VFFDTSAV+ALHV+ P R VA+ AL  GTCVSAL+LTE+LA+I KLTDEP+LQAD+EDALRLQWDRYAVVPVDQRCLDRAA L+R+QP+RLADALHLAAA+RLP  + +VTFDPTQIPVA+SLGFDVVST
Sbjct:    1 MSVFFDTSAVVALHVENPVRRVAVGALVDGTCVSALALTEALALIAKLTDEPVLQADLEDALRLQWDRYAVVPVDQRCLDRAAQLMRDQPIRLADALHLAAADRLPRPITFVTFDPTQIPVALSLGFDVVST 132          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A3C2B9D6_9ACTN (PINc domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B9D6_9ACTN)

HSP 1 Score: 211 bits (537), Expect = 1.640e-65
Identity = 111/154 (72.08%), Postives = 126/154 (81.82%), Query Frame = 1
Query:  100 PARPCRSGAACASTAPCASFAGDVTVFFDTSAVLALHVDTPARAVALAALEPGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVS 561
            P RPC SG       P A     VTVFFD+SAV+AL +++P R +A  AL+  TCVSAL+LTESLA+I KLTD+P +QAD+EDALRLQWDRYAVVPVDQRCLDRAA LLREQPLRLADALHLAAA+RLP  V +VTFDPTQIPVA+SLGFDVVS
Sbjct:  120 PTRPCHSGVERRPPRPGAEGGTRVTVFFDSSAVVALQIESPLRRIAADALDATTCVSALALTESLALIAKLTDDPFVQADLEDALRLQWDRYAVVPVDQRCLDRAAQLLREQPLRLADALHLAAADRLPRPVTFVTFDPTQIPVALSLGFDVVS 273          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A3C1L621_9ACTN (PINc domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L621_9ACTN)

HSP 1 Score: 204 bits (519), Expect = 3.260e-63
Identity = 105/138 (76.09%), Postives = 120/138 (86.96%), Query Frame = 1
Query:  148 CASFAGDVTVFFDTSAVLALHVDTPARAVALAALEPGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVS 561
            CA  A  +TVFFDTSAV+A+H+++  R  A+ AL P TCVSAL+LTE+LA+I KLTDEPILQAD+EDALRLQWDRYAVVPVDQRCLDRAA LLREQPLRLADAL LAAA+RLP  + +VTFDP QIPVA+SLGFDVVS
Sbjct:  104 CAEGAARMTVFFDTSAVVAVHIESSVRRHAVDALAPLTCVSALALTEALALIAKLTDEPILQADLEDALRLQWDRYAVVPVDQRCLDRAAQLLREQPLRLADALQLAAADRLPRPITFVTFDPAQIPVALSLGFDVVS 241          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: UPI0013C5029F (type II toxin-antitoxin system VapC family toxin n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI0013C5029F)

HSP 1 Score: 185 bits (470), Expect = 2.680e-57
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 1
Query:  169 VTVFFDTSAVLALHVDTPARAVALAALEPGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVST 564
            +T FFDTSAV+ALHVD   R +A AAL+  TCVSAL+LTE+LA+I KLTDE IL+ D+EDA+RLQWDRY VVPVDQR LD AA LLREQP+RLADA+ LAAA RLP  V YVTFDP QIPVA+ LGFDV ST
Sbjct:    1 MTTFFDTSAVVALHVDVAERRIAAAALDDETCVSALALTEALAVIDKLTDEAILRTDLEDAIRLQWDRYHVVPVDQRGLDTAASLLREQPIRLADAIQLAAAVRLPRPVHYVTFDPIQIPVALGLGFDVAST 132          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A7K1B0H4_9ACTN (Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A7K1B0H4_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 2.550e-53
Identity = 88/134 (65.67%), Postives = 110/134 (82.09%), Query Frame = 1
Query:  169 VTVFFDTSAVLALHVDTPARAVALAAL--EPGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVST 564
            +TV+ D SA++A H+D P R V L AL  +P  C S L+L ESLA+I ++ DEP+L+AD+ED +RL WDR AVVPVDQRCLDRAA L+REQPLRL+DALHLAAA+RLP  VR+VTFDP QIPVA++LG+DVVS+
Sbjct:    1 MTVYLDASALVAAHLDQPIRTVVLDALRDDPTWCSSGLTLMESLALIDRVVDEPVLRADLEDLVRLTWDRVAVVPVDQRCLDRAAALMREQPLRLSDALHLAAADRLPRPVRFVTFDPGQIPVALALGYDVVSS 134          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A848UFK6_9ACTN (Ribonuclease VapC n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UFK6_9ACTN)

HSP 1 Score: 175 bits (443), Expect = 4.370e-53
Identity = 92/133 (69.17%), Postives = 110/133 (82.71%), Query Frame = 1
Query:  169 VTVFFDTSAVLALHVDTPARAVALAALE--PGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVS 561
            +T+ FDTSA+LA+ VD P RAVALAAL+  P  C SAL+LTE+L  I +LTDEP+ +AD+EDALRL WD + VVPVDQRCLDRAA L REQP+RLADA+HLAAAERLP  VR+VTFDP QI VA+ LGF+VV+
Sbjct:    1 MTLAFDTSALLAVAVDGPQRAVALAALDDDPVWCASALALTEALPAIDRLTDEPVTRADLEDALRLAWDHFHVVPVDQRCLDRAAHLSREQPVRLADAIHLAAAERLPRPVRFVTFDPAQIGVALGLGFEVVA 133          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A539DVR8_9ACTN (PINc domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DVR8_9ACTN)

HSP 1 Score: 171 bits (434), Expect = 8.400e-52
Identity = 85/133 (63.91%), Postives = 107/133 (80.45%), Query Frame = 1
Query:  169 VTVFFDTSAVLALHVDTPARAVALAAL--EPGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVS 561
            +TV+ D SA++  H++ PAR   L A+  +P  C S L+L ESLA+I ++ DEPIL++D+ED +RL WDR AVVP+DQRCLDRAA L+REQPLRL+DALHLAAA+RLP  VR+VT DP QIPVA+SLGFDVVS
Sbjct:    1 MTVYLDASALVMAHLEQPARTTVLDAMADDPEWCTSGLTLVESLALIDRVADEPILRSDLEDLVRLTWDRIAVVPIDQRCLDRAAALMREQPLRLSDALHLAAADRLPRPVRFVTVDPAQIPVALSLGFDVVS 133          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A4R7I3Z5_9ACTN (PINc domain-containing protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I3Z5_9ACTN)

HSP 1 Score: 167 bits (423), Expect = 3.930e-50
Identity = 89/133 (66.92%), Postives = 107/133 (80.45%), Query Frame = 1
Query:  169 VTVFFDTSAVLALHVDTPARAVALAALE--PGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVS 561
            +T+  DTSA+LA+ VD   R+VAL AL+  P  C SAL+LTE+L  I +L+DE I++AD+EDALRL WDR  VVPVDQRCLDRAA L REQP+RL DA+HLAAAERLP  VR++TFDPTQI VA+ LGFDVVS
Sbjct:    1 MTLALDTSALLAIVVDGDQRSVALEALDDDPTWCASALALTEALPTIDRLSDERIIRADLEDALRLTWDRVHVVPVDQRCLDRAAALSREQPVRLTDAIHLAAAERLPRPVRFLTFDPTQITVALGLGFDVVS 133          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A524B7K1_9ACTN (PINc domain-containing protein n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B7K1_9ACTN)

HSP 1 Score: 169 bits (427), Expect = 5.270e-50
Identity = 88/138 (63.77%), Postives = 113/138 (81.88%), Query Frame = 1
Query:  160 AGD-VTVFFDTSAVLALHVDTPARAVALAALE--PGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVST 564
            AGD VT++ D SA++A  V+   R+VAL AL+  P  C SAL+LTESLA++P+LTDE +LQ D+ED LRL WDR AVVP+DQRCLDRAA + REQP+ ++DA+HLAAA+RLP  VR+VTFDP QIPVA++LGF+VVS+
Sbjct:   51 AGDQVTLYLDASALVAAVVEGRNRSVALDALDADPDWCASALALTESLALVPRLTDEVVLQDDVEDQLRLLWDRVAVVPIDQRCLDRAAQISREQPVHVSDAIHLAAADRLPRPVRFVTFDPAQIPVALALGFNVVSS 188          
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Match: A0A2E0RTJ5_9ACTN (PINc domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RTJ5_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 2.250e-49
Identity = 87/133 (65.41%), Postives = 108/133 (81.20%), Query Frame = 1
Query:  169 VTVFFDTSAVLALHVDTPARAVALAALE--PGTCVSALSLTESLAMIPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLADALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVS 561
            +T+  DTSA+LA+ VD   R VALAAL+  P  C SAL+LTE+L  I +L+DE I++AD+EDA+RL WDR  VVPVDQRCLDRAA L REQP+RL DA+HLAAAERLP  ++++TFDPTQIPVA+ LGF+VVS
Sbjct:    1 MTLAIDTSALLAIVVDGEQRDVALAALDEDPVWCASALALTEALPAIDRLSDERIIRADLEDAVRLTWDRLHVVPVDQRCLDRAASLSREQPVRLTDAIHLAAAERLPRPIQFLTFDPTQIPVALGLGFEVVS 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16938.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3EWX3_9ACTN1.730e-6778.79Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A6I... [more]
A0A3C2B9D6_9ACTN1.640e-6572.08PINc domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A3C1L621_9ACTN3.260e-6376.09PINc domain-containing protein n=2 Tax=Actinobacte... [more]
UPI0013C5029F2.680e-5772.73type II toxin-antitoxin system VapC family toxin n... [more]
A0A7K1B0H4_9ACTN2.550e-5365.67Ribonuclease VapC n=2 Tax=root TaxID=1 RepID=A0A7K... [more]
A0A848UFK6_9ACTN4.370e-5369.17Ribonuclease VapC n=1 Tax=Ilumatobacter sp. TaxID=... [more]
A0A539DVR8_9ACTN8.400e-5263.91PINc domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A4R7I3Z5_9ACTN3.930e-5066.92PINc domain-containing protein n=1 Tax=Ilumatobact... [more]
A0A524B7K1_9ACTN5.270e-5063.77PINc domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A2E0RTJ5_9ACTN2.250e-4965.41PINc domain-containing protein n=1 Tax=Acidimicrob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16938contigP-wetherbeei_contig16938:903..1469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_30550
PFAMsPIN
Model size569
Max annot lvl201174|Actinobacteria
KEGG koko:K07064
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.61e-46
EggNOG OGsCOG1848@1|root,COG1848@2|Bacteria,2H8GW@201174|Actinobacteria
DescriptionPIN domain
Cds size567
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186102.6356993-CDS-P-wetherbeei_contig16938:902..14691683186102.6356993-CDS-P-wetherbeei_contig16938:902..1469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16938 903..1469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16938.2.1prot_P-wetherbeei_contig16938.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16938 903..1469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16938.2.1

>prot_P-wetherbeei_contig16938.2.1 ID=prot_P-wetherbeei_contig16938.2.1|Name=mRNA_P-wetherbeei_contig16938.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
SPGSARSRAPTRRWRRWSPPASCCRHDAPTPPDPARPCRSGAACASTAPC
ASFAGDVTVFFDTSAVLALHVDTPARAVALAALEPGTCVSALSLTESLAM
IPKLTDEPILQADIEDALRLQWDRYAVVPVDQRCLDRAAVLLREQPLRLA
DALHLAAAERLPSIVRYVTFDPTQIPVAISLGFDVVST*
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mRNA from alignment at P-wetherbeei_contig16938:903..1469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16938.2.1 ID=mRNA_P-wetherbeei_contig16938.2.1|Name=mRNA_P-wetherbeei_contig16938.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig16938:903..1469- (Phaeothamnion wetherbeei SAG_119_79)
TCGCCCGGCTCGGCCCGGTCGAGGGCACCGACTCGTCGATGGAGGCGCTG GTCGCCGCCGGCCTCGTGCTGCCGCCACGACGCACCGACGCCGCCCGACC CGGCCCGCCCGTGCCGATCTGGAGCGGCGTGCGCCTCGACCGCGCCCTGC GCGAGCTTCGCGGGTGACGTGACGGTCTTCTTCGACACCAGCGCCGTGCT GGCCCTGCACGTCGACACGCCGGCGCGTGCCGTTGCGTTGGCAGCACTGG AGCCGGGCACGTGCGTCAGCGCGCTCTCGCTGACCGAGTCGCTGGCGATG ATCCCCAAGCTGACCGACGAGCCGATCCTCCAGGCCGACATCGAGGACGC GCTCCGGTTGCAGTGGGATCGCTACGCCGTCGTGCCGGTCGACCAACGCT GCCTCGATCGCGCCGCAGTGCTCCTGCGCGAGCAGCCGCTACGGCTGGCC GACGCGTTGCACCTCGCCGCAGCCGAGCGGCTGCCCTCGATCGTGCGCTA CGTGACGTTCGACCCGACACAGATCCCCGTCGCCATCTCGCTCGGCTTCG ACGTCGTATCGACCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16938:903..1469-

>mRNA_P-wetherbeei_contig16938.2.1 ID=mRNA_P-wetherbeei_contig16938.2.1|Name=mRNA_P-wetherbeei_contig16938.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig16938:903..1469- (Phaeothamnion wetherbeei SAG_119_79)
TCGCCCGGCTCGGCCCGGTCGAGGGCACCGACTCGTCGATGGAGGCGCTG
GTCGCCGCCGGCCTCGTGCTGCCGCCACGACGCACCGACGCCGCCCGACC
CGGCCCGCCCGTGCCGATCTGGAGCGGCGTGCGCCTCGACCGCGCCCTGC
GCGAGCTTCGCGGGTGACGTGACGGTCTTCTTCGACACCAGCGCCGTGCT
GGCCCTGCACGTCGACACGCCGGCGCGTGCCGTTGCGTTGGCAGCACTGG
AGCCGGGCACGTGCGTCAGCGCGCTCTCGCTGACCGAGTCGCTGGCGATG
ATCCCCAAGCTGACCGACGAGCCGATCCTCCAGGCCGACATCGAGGACGC
GCTCCGGTTGCAGTGGGATCGCTACGCCGTCGTGCCGGTCGACCAACGCT
GCCTCGATCGCGCCGCAGTGCTCCTGCGCGAGCAGCCGCTACGGCTGGCC
GACGCGTTGCACCTCGCCGCAGCCGAGCGGCTGCCCTCGATCGTGCGCTA
CGTGACGTTCGACCCGACACAGATCCCCGTCGCCATCTCGCTCGGCTTCG
ACGTCGTATCGACCTGA
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