mRNA_P-wetherbeei_contig16923.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16923.2.1
Unique NamemRNA_P-wetherbeei_contig16923.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16923.2.1 vs. uniprot
Match: A0A7Y4X3A1_9DELT (Nuclear transport factor 2 family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4X3A1_9DELT)

HSP 1 Score: 169 bits (428), Expect = 3.400e-50
Identity = 92/185 (49.73%), Postives = 118/185 (63.78%), Query Frame = 1
Query:    7 TRRSAKA---AAAPVKQATRHAPARAPVAXXRSATKGSPMS---DYEGVRALLSRYCVLIDHGKLVELSELYHSKAKFSVSFDSVKSHSGRAAILAWYSRFFYEPPRKVSYPRHKLFEPYIVVNGNTATASAYFDSDFVEASGDVRILAGRYDDVLVKDRGRWLFKERTITVCYHYSPDKAKEGM 543
            TR  AKA   AA PVK   R        A  R  T+ SP S     EGVR +LSRYC  +D   L E+  L+H  A FSVSFD  + H+GR  I AWY+RFF + P + S+ RHKL+EP + ++G+TATA  YFDSD V+  G + ++AGRYDD LV++ G+W FK+R ITV YHYSP  ++EGM
Sbjct:    8 TRTQAKAGRGAAKPVKTTVRPLQRARQAAPGR--TRSSPPSLSESVEGVRQVLSRYCFALDTLALQEVGALFHRDATFSVSFDREQQHTGRETIKAWYARFFQQRPGQYSHMRHKLYEPRVTIHGDTATAVTYFDSDAVDQDGKIIVIAGRYDDTLVRESGQWFFKDRRITVLYHYSPGTSREGM 190          
BLAST of mRNA_P-wetherbeei_contig16923.2.1 vs. uniprot
Match: A0A7C3MLR0_9BACT (Nuclear transport factor 2 family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C3MLR0_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.020e-18
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  121 DYEGVRALLSRYCVLIDHGKLVELSELYHSKAKFSVSFDSVKSHSGRAAILAWYSRFFYEPPRKVSYPRHKLFEPYIVVNGNTATASAYFDSDFV-EASGDVRILAGRYDDVLVKDRGRWLFKERTITVCY 510
            D   ++ +L RYC  +D G   +++ L+H  A     +       GRAAI  W++ +       V Y RH +  P I V+GN AT+  Y  +D V +ASG    ++G Y D LVK+ GRW FKER I V Y
Sbjct:    4 DIVAIQQVLYRYCFAVDKGTADDVAALFHEDATLMPIYSGEPPARGRAAIRNWFTVYHRNQRASVDYLRHCVTNPVIEVSGNEATSQCYLIADAVNKASGKPYSVSGYYLDKLVKEGGRWYFKERQIHVNY 134          
BLAST of mRNA_P-wetherbeei_contig16923.2.1 vs. uniprot
Match: A0A523LSI1_9GAMM (Nuclear transport factor 2 family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LSI1_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 6.280e-8
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 1
Query:  100 TKGSPMSDYEGVRALLSRYCVLIDHGKLVE-LSELYHSKAKFSVSFDSVKSHSGRAAILAWYSRFFYEPPRKVSYPRHKLFEPYIVV--NGNTATASAYFDSDFVEASGDVRI-LAGRYDDVLVKDRGRWLFKERTI 498
            T+ S + D E +R L + YC L D G   + L +L+ + A +      +    GR AI     RFF   P  +S+  H +    I +  +GNTAT   Y        S    + LAGRYDD LV+++ RWLF++ T+
Sbjct:   14 TRISRLEDVERIRRLKAHYCDLCDEGYDADALIDLFTADAVWDGG--DLGRFDGRDAI----HRFFSNMPNVMSFAIHHITNAAIRIEEDGNTATGRWYLLQTATTRSDSQAVWLAGRYDDELVREQDRWLFRQVTL 144          
BLAST of mRNA_P-wetherbeei_contig16923.2.1 vs. uniprot
Match: A0A4R7VJC1_9PSED (SnoaL-like protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A4R7VJC1_9PSED)

HSP 1 Score: 52.0 bits (123), Expect = 4.300e-5
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1
Query:  115 MSDYEGVRALLSRYCVLIDHGKLVE-LSELYHSKAKFSVSFDSVKSHSGRAAILAWYSRFFYEPPRKVSYPRHKLFEPYIVVNGNTATASAYFD--------SDFVEASGDVRILAGRYDDVLVKDRGRWLFKERT 495
            + D E ++ +  RY   +D G   E ++ L+  + ++ +     +   GRAAI              +S+ +H +F P I +N     A A F+        SD   +SG+  ILAG Y+D LVK RG+W FK  T
Sbjct:   15 LEDVEKIKEIKYRYACHLDDGFDAESIANLFTEEGEWIIKGVGGEVR-GRAAIKLHCENL----KSNISWSQHNIFAPRIELNVEGDKAVARFNLMCLLTMNSDANGSSGEAYILAGHYEDHLVKIRGKWFFKAMT 145          
BLAST of mRNA_P-wetherbeei_contig16923.2.1 vs. uniprot
Match: A0A1E3SK78_9MYCO (SnoaL-like domain-containing protein n=2 Tax=Mycobacterium TaxID=1763 RepID=A0A1E3SK78_9MYCO)

HSP 1 Score: 50.8 bits (120), Expect = 6.350e-5
Identity = 45/146 (30.82%), Postives = 64/146 (43.84%), Query Frame = 1
Query:  115 MSDYEGV-RALLSRYCVLIDHGKLVELSELYHSKAKFSVSFDSVKSHSGRAAILAWYSRFFYEPPRKVSYPRHKLFEPYIVVNGNTATASAYFDSDFVEASGDVRILAGRYDDVLVKDRGRWLFKERTIT-VCYHYSPDKAKEGMA 546
            MSD   V R LL+ Y + +D G      +L+ + A+F V   +   H G   +            R   +  H      I V GNTAT+ +     FV A GD ++    YDD LV+D GRWLF+ R    +  H   D  + G +
Sbjct:    1 MSDATAVIRGLLADYALALDAGDDDACVQLFTADAEFRVYGRTFTGHEGIGRMF-----------RMAPHGLHLTGVSRIDVQGNTATSRSQVL--FVRA-GDQQLRPALYDDELVQDGGRWLFRRRHCRFITTHGLSDSPEAGQS 132          
BLAST of mRNA_P-wetherbeei_contig16923.2.1 vs. uniprot
Match: A0A5B2TCV6_9PROT (Nuclear transport factor 2 family protein n=1 Tax=Roseomonas oryzae TaxID=1608942 RepID=A0A5B2TCV6_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 8.650e-5
Identity = 37/133 (27.82%), Postives = 63/133 (47.37%), Query Frame = 1
Query:  115 MSDYEGVRALLSRYCVLIDHGKLVELSELYHSKAKFSVSFDSVKSHSGRAAILAWYSRFFYEPPRKVSYPRHKLFEPYIVVNGNTATASAYFDSDFVEASGDV-RILAGRYDDVLVKDRGRWLFKERTITVCY 510
            + D   +  L +RYC L+D        EL+     F    ++V+ H   AA++ ++S+     P+      H      + ++G+TA      +  ++ A+  V  + AG YDDV+V+  GRW F+ R IT  Y
Sbjct:   11 IEDELAIGQLRARYCHLLDDRDWPAFVELFTPDGVFQ-GLEAVRGH---AALMEFFSQ---RVPKLAEDFWHFCTNGTVEIDGDTARGRITLE--YLSATNGVSHVSAGHYDDVMVRQGGRWRFQSRVITFYY 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16923.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7Y4X3A1_9DELT3.400e-5049.73Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A7C3MLR0_9BACT1.020e-1837.40Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A523LSI1_9GAMM6.280e-833.58Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A4R7VJC1_9PSED4.300e-530.15SnoaL-like protein n=2 Tax=Pseudomonas TaxID=286 R... [more]
A0A1E3SK78_9MYCO6.350e-530.82SnoaL-like domain-containing protein n=2 Tax=Mycob... [more]
A0A5B2TCV6_9PROT8.650e-527.82Nuclear transport factor 2 family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16923contigP-wetherbeei_contig16923:381..932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1157708.KB907454_gene3010
PFAMsSnoaL_4
Model size552
Max annot lvl2|Bacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.7e-09
EggNOG OGsCOG5517@1|root,COG5517@2|Bacteria
Descriptionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor
Cds size552
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186102.144993-CDS-P-wetherbeei_contig16923:380..9321683186102.144993-CDS-P-wetherbeei_contig16923:380..932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16923 381..932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16923.2.1prot_P-wetherbeei_contig16923.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16923 381..932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16923.2.1

>prot_P-wetherbeei_contig16923.2.1 ID=prot_P-wetherbeei_contig16923.2.1|Name=mRNA_P-wetherbeei_contig16923.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MATRRSAKAAAAPVKQATRHAPARAPVAPARSATKGSPMSDYEGVRALLS
RYCVLIDHGKLVELSELYHSKAKFSVSFDSVKSHSGRAAILAWYSRFFYE
PPRKVSYPRHKLFEPYIVVNGNTATASAYFDSDFVEASGDVRILAGRYDD
VLVKDRGRWLFKERTITVCYHYSPDKAKEGMAP*
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mRNA from alignment at P-wetherbeei_contig16923:381..932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16923.2.1 ID=mRNA_P-wetherbeei_contig16923.2.1|Name=mRNA_P-wetherbeei_contig16923.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig16923:381..932+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACTAGACGTTCAGCAAAAGCTGCAGCAGCGCCGGTCAAGCAAGC CACACGTCACGCGCCGGCGCGTGCGCCTGTGGCGCCCGCCCGCAGCGCGA CCAAGGGCTCGCCCATGAGCGACTACGAAGGCGTGCGGGCTTTGCTCAGC CGTTACTGTGTGCTCATCGATCACGGCAAGCTCGTGGAGTTGAGCGAGCT GTACCACAGCAAGGCGAAATTTTCGGTCTCGTTCGACAGCGTCAAGAGTC ACAGCGGTCGCGCCGCGATCCTCGCCTGGTACTCACGGTTTTTCTACGAG CCGCCACGCAAGGTCAGCTATCCGCGTCACAAACTGTTCGAGCCTTATAT CGTCGTCAACGGCAACACCGCCACCGCGTCCGCTTACTTCGACTCAGATT TCGTCGAAGCGAGTGGCGACGTCAGGATCCTCGCCGGCCGCTATGACGAT GTGCTTGTCAAAGACCGCGGCCGGTGGCTGTTCAAGGAACGCACGATTAC CGTGTGCTATCACTATTCGCCGGATAAGGCCAAAGAAGGCATGGCGCCCT GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16923:381..932+

>mRNA_P-wetherbeei_contig16923.2.1 ID=mRNA_P-wetherbeei_contig16923.2.1|Name=mRNA_P-wetherbeei_contig16923.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig16923:381..932+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACTAGACGTTCAGCAAAAGCTGCAGCAGCGCCGGTCAAGCAAGC
CACACGTCACGCGCCGGCGCGTGCGCCTGTGGCGCCCGCCCGCAGCGCGA
CCAAGGGCTCGCCCATGAGCGACTACGAAGGCGTGCGGGCTTTGCTCAGC
CGTTACTGTGTGCTCATCGATCACGGCAAGCTCGTGGAGTTGAGCGAGCT
GTACCACAGCAAGGCGAAATTTTCGGTCTCGTTCGACAGCGTCAAGAGTC
ACAGCGGTCGCGCCGCGATCCTCGCCTGGTACTCACGGTTTTTCTACGAG
CCGCCACGCAAGGTCAGCTATCCGCGTCACAAACTGTTCGAGCCTTATAT
CGTCGTCAACGGCAACACCGCCACCGCGTCCGCTTACTTCGACTCAGATT
TCGTCGAAGCGAGTGGCGACGTCAGGATCCTCGCCGGCCGCTATGACGAT
GTGCTTGTCAAAGACCGCGGCCGGTGGCTGTTCAAGGAACGCACGATTAC
CGTGTGCTATCACTATTCGCCGGATAAGGCCAAAGAAGGCATGGCGCCCT
GA
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