mRNA_P-wetherbeei_contig1692.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1692.4.1
Unique NamemRNA_P-wetherbeei_contig1692.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 4.560e-76
Identity = 129/209 (61.72%), Postives = 159/209 (76.08%), Query Frame = 1
Query:   10 DVEGCFGILFAVLDRVGDVEEA-PVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEVGEAEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHK 633
            DVEGCFGILF++L +  + + A P L+ EIA  +L+ VDD+APLRLKLVT LYNMLP R   QLEVLL V+ YA  AKL++MLS FFAGV+DW+ GWELS  D+RR+YLL++D L   G+A +SQ+FL+KYLAT+ GA    LA V+ AA RG  GAV++PIVSF EQHNLLGM AV QLK D KY  +++LL IFSVEKL  Y AFH+
Sbjct:   70 DVEGCFGILFSLLFKTDNPKAAVPALSMEIATKVLEKVDDRAPLRLKLVTNLYNMLPVRTAGQLEVLLLVIRYAKEAKLVAMLSSFFAGVDDWIKGWELSVADQRRLYLLISDTLGSEGKAVESQKFLMKYLATYDGATTAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVTQLKADPKYSAVHELLHIFSVEKLGEYMAFHE 278          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA)

HSP 1 Score: 202 bits (515), Expect = 5.830e-60
Identity = 114/220 (51.82%), Postives = 153/220 (69.55%), Query Frame = 1
Query:    4 KKDVEGCFGILFAVLDRVGD-VEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEVGEAEQSQRFLIKYLATFS----GAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHKVRSIL 648
            ++ +EGCF +LF +L R+ D  +  PVL  E+ AALLD  +DKA LRL+L T LYNMLP++   Q EVLL+++ YA+   LL+ML+ FFA +   LA W+LS +D+RR++LL+ADVL++  +A  SQ FL+KYL TF     G+   A   VR AAARGA GAV+APIVSF+E HNLLGM AV++L+ D +Y  +Y+LL IF  EKL+ Y AF K    L
Sbjct:   68 EETIEGCFAVLFHLLHRLPDPAKNMPVLVPEVTAALLDS-EDKAGLRLRLATSLYNMLPAKTSVQFEVLLAIIKYAASTGLLAMLNSFFASMESMLAAWQLSLKDQRRLFLLVADVLSKASDAAGSQVFLMKYLVTFDNDAEGSKTSAKE-VRAAAARGAVGAVKAPIVSFMEHHNLLGMSAVQELRNDPEYAQVYELLRIFGEEKLETYLAFAKANQAL 285          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: A0A7S2CTT4_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTT4_9STRA)

HSP 1 Score: 139 bits (350), Expect = 6.650e-36
Identity = 87/213 (40.85%), Postives = 131/213 (61.50%), Query Frame = 1
Query:   10 DVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPS-----RGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEVGEAEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHK 633
            D EGCF ILF  L    D      L   I +AL    + KA LRLK++  LYN L S      G  +++VLL+++ YA + +  +ML G+F  +++ +  W LS  D+R +++ ++  L      +++ +FLI+YLATF    +DA+   +  AA+GA GA+R PI+ F+E+HNLLGM A++QL+ DA+YG LY+LL IFSV KL  Y  F++
Sbjct:   56 DAEGCFQILFFELQEEKDTAVMLPLVGLITSALTGS-ESKAKLRLKILANLYNALCSDDKVPEGQIRVDVLLAIIKYAGKTQQSAMLHGYFDLLDELMVKWNLSLSDKRTLFVEVSKALEAEELNDKAHQFLIRYLATFDDT-SDAVDTSK--AAQGAIGAIRKPILCFMERHNLLGMTAMQQLENDAEYGKLYELLRIFSVGKLREYLNFYE 264          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: A0A7S2UX52_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX52_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.860e-29
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  223 YASRAKLLSMLSGFFAGVN-DWLAGWELSAEDRRRIYLLMADVLAEVGEAEQSQRFLIKYLATFSG-APADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHK 633
            +A  +    +LS FF     +W+  ++L   D+R +YLLMAD L +   + ++Q+FL+KYLAT+   A A AL+AV+  AARGA GA+R PIVSF E HN+L + AV+QL+ D KY  LY LL +FS EKL AY  F K
Sbjct:    1 FAMASSQNGLLSSFFIKQGQEWVELFDLETGDQRTLYLLMADSLVQSQHSHEAQKFLLKYLATYEDEADAKALSAVKEHAARGAVGAIRFPIVSFTEGHNVLALQAVKQLEGDKKYKNLYNLLRVFSTEKLQAYLDFCK 139          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: A0A2C9WCR1_MANES (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9WCR1_MANES)

HSP 1 Score: 115 bits (289), Expect = 6.520e-27
Identity = 78/217 (35.94%), Postives = 123/217 (56.68%), Query Frame = 1
Query:    1 TKKDVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAE-VGEAEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHKVRSIL 648
            ++KD+E  F ++  ++ + G  +EA  +A  I   ++    DK  LRLK++  LYN+L     ++  V +  +  A   K++  +   F  ++ +L  W L  +D+R ++L +++VL E     + S +FL KYLATFSG  A A+A  +  A R     V+AP +    Q +LLGM AV QL++DAKY  +YQLL+IF  ++LDAY  FH   S L
Sbjct:   74 SEKDLECIFTVICDLVSKSGSPDEALEMAKLICGKIILQPTDKPALRLKILFNLYNLLED-AYSRFYVYMRALNLAVSGKVMEHIIPSFKTIDSFLKEWNLDVKDQRDLFLGISNVLRENKSSGKDSFKFLTKYLATFSGEDAYAMAEAKEEAVRTIIVFVKAPDIF---QCDLLGMPAVEQLEKDAKYALVYQLLNIFLTQRLDAYLEFHAANSAL 286          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: UPI001C348ED2 (Uncharacterized protein n=7 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C348ED2)

HSP 1 Score: 109 bits (272), Expect = 2.130e-24
Identity = 71/211 (33.65%), Postives = 120/211 (56.87%), Query Frame = 1
Query:    1 TKKDVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEVGE-AEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFH 630
            ++KD+E  F ++  ++ +    +E   +A  I+  ++   +DK  LRLK++  LYN+L +    Q  V +  +  A   K+   +   F  ++ +L  W +   D+R ++L+++++L E    A++S +FL+KYLATFSG  A  ++  +  A R     V+AP +    Q +LL M AV QL++DAKY  +YQLL IF  ++LDAY  FH
Sbjct:   72 SEKDLECIFTVICNLVTKSESSDEKIEMAKVISGKIIQQPNDKPALRLKILFNLYNLLENPH-GQFHVYMKALTLAFNGKVTEHIIPSFKKMDSFLQEWNIGISDQRELFLIISNILKEHKSLAKESFKFLVKYLATFSGEDAYTMSEAKEEAVRAIVEFVKAPDMF---QCDLLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFH 278          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: A0A067K648_JATCU (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067K648_JATCU)

HSP 1 Score: 108 bits (269), Expect = 4.510e-24
Identity = 76/217 (35.02%), Postives = 119/217 (54.84%), Query Frame = 1
Query:    1 TKKDVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEV-GEAEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHKVRSIL 648
            ++K++E  F ++  ++ +    +EA  +A  +   ++    DK  LRLK++  LYN+L +   ++  V L  +  A   K+   +   F  ++ +L  W L  +D R ++L +A+VL E    A+ S +FL KYLATFSG  A A+A  +  A R     V+AP +    Q +LL M AV QL++DAKY  +YQLL IF  ++LDAY  F    S L
Sbjct:   74 SEKELECIFTVICNLVTKSESPDEALEMAKLVCGKIIQQPTDKPALRLKILFNLYNLLENTY-SRFYVYLKALNLAVSGKVTEHVIPSFKKIDSFLKEWNLEVKDERELFLSIANVLRESKSSAKDSFKFLTKYLATFSGEDAYAMAEAKEEAVRTIIEFVKAPDMF---QCDLLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFQAANSAL 286          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: A0A2I4EC20_JUGRE (Eukaryotic translation initiation factor 3 subunit M n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4EC20_JUGRE)

HSP 1 Score: 107 bits (268), Expect = 6.110e-24
Identity = 72/217 (33.18%), Postives = 120/217 (55.30%), Query Frame = 1
Query:    1 TKKDVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEVGE-AEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHKVRSIL 648
            ++KD+E  + ++  ++ +    +E   +A  I+  ++   +DK  LRLK++  LYN+L +    Q  V +  +  A   K+   +   F  ++ +L  W +   D+R ++L +++VL E    ++ S +FL+KYLATFSG  A  ++  +  A R     V+AP +    Q +LL M AV QL++DAKY  +YQLL IF  ++LDAY  FH   S L
Sbjct:   72 SEKDLECIYTVICNLVTKSESSDEEIEMAKVISGKIIQQPNDKPALRLKILFNLYNLLENPH-GQFHVYMKALTLAFNGKVTEHIVPSFKKMDSFLQEWNIGISDQRELFLTISNVLKEHKSLSKDSFKFLVKYLATFSGEDAYTMSEAKEEAVRAIVEFVKAPDMF---QCDLLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFHAANSTL 284          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: A0A022R302_ERYGU (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R302_ERYGU)

HSP 1 Score: 106 bits (264), Expect = 2.240e-23
Identity = 72/217 (33.18%), Postives = 119/217 (54.84%), Query Frame = 1
Query:    1 TKKDVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEV-GEAEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHKVRSIL 648
            ++KD+E  + ++  ++ +   +++   +A  IA  +     +K  LRLK++  LYN+L +   +Q  V +  +  A   K+   +   F  ++++L  W L   DRR ++L +A+VL +    A+ S  FL+KYL TFSG  A +LA  +  A       ++AP +    Q +LL M A+ QL++D KY  +YQLL IF  ++LDAY AFH   S L
Sbjct:   72 SEKDIECIYTVICNLVKKPESLDQVHEMAELIATKVTQQPSEKPALRLKILFNLYNLLENPY-SQFFVYMKALNLAINGKVTEHIVPSFKKIDNFLREWNLGVNDRRDLFLKVANVLKDSKSSAKDSFNFLVKYLDTFSGDDALSLAEAKEEAVHTVIDFIKAPDMF---QGDLLDMPAIAQLEKDTKYELVYQLLKIFLTQRLDAYMAFHSSNSDL 284          
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Match: UPI001C27E4F6 (eukaryotic translation initiation factor 3 subunit M-like isoform X3 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27E4F6)

HSP 1 Score: 100 bits (249), Expect = 1.210e-21
Identity = 66/215 (30.70%), Postives = 122/215 (56.74%), Query Frame = 1
Query:    1 TKKDVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKLVTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWELSAEDRRRIYLLMADVLAEV-GEAEQSQRFLIKYLATFSGAPADALAAVRPAAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSVEKLDAYRAFHKVRS 642
            ++KD+E  + ++  ++ +   +++   +A  IA  +    ++K  LRLK++  LYN+L +   +Q  V +  +  A   K+   +   F  ++D+L+ W L  +D+R ++L +A++L +    A++S  +L+KYL TFSG  A ALA  +  A       V++P +    Q +LL + A+ QL++D+ Y P+YQ+L+IF  ++LDAY  F    S
Sbjct:   72 SEKDLECIYTVICHLVKKPESLDQVHEIAELIATKVTQQPNEKPGLRLKILFNLYNLLENPY-SQFFVYMKALNLAVSGKVTEHIVPSFKKMDDFLSEWNLGTKDKRDLFLTVANILKDSKSSAKESFDYLVKYLETFSGDDALALAEAKEEAVLAVVEFVKSPDMF---QGDLLDIPAIAQLEKDSAYAPVYQILNIFLTQRLDAYLDFQSSNS 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1692.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E6_ECTSI4.560e-7661.72Eukaryotic translation initiation factor 3 subunit... [more]
A0A835Z3J7_9STRA5.830e-6051.82Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2CTT4_9STRA6.650e-3640.85Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2UX52_9STRA8.860e-2948.20Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2C9WCR1_MANES6.520e-2735.94Eukaryotic translation initiation factor 3 subunit... [more]
UPI001C348ED22.130e-2433.65Uncharacterized protein n=7 Tax=Carya illinoinensi... [more]
A0A067K648_JATCU4.510e-2435.02Eukaryotic translation initiation factor 3 subunit... [more]
A0A2I4EC20_JUGRE6.110e-2433.18Eukaryotic translation initiation factor 3 subunit... [more]
A0A022R302_ERYGU2.240e-2333.18Eukaryotic translation initiation factor 3 subunit... [more]
UPI001C27E4F61.210e-2130.70eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1692contigP-wetherbeei_contig1692:5162..6531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6E6
Preferred nameEIF3M
PFAMsPCI
Model size648
Max annot lvl2759|Eukaryota
KEGG koko:K15030
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001732,GO:0002020,GO:0002181,GO:0002183,GO:0002790,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005852,GO:0005856,GO:0006412,GO:0006413,GO:0006508,GO:0006518,GO:0006807,GO:0006810,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009306,GO:0009653,GO:0009893,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016282,GO:0016485,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031369,GO:0031638,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032991,GO:0033036,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045862,GO:0046677,GO:0046903,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051604,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070864,GO:0070865,GO:0070887,GO:0070993,GO:0071236,GO:0071310,GO:0071396,GO:0071541,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089720,GO:0097202,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:1900117,GO:1900119,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1990904,GO:2000116,GO:2001056,GO:2001270,GO:2001272
Exons3
Evalue7.48e-77
EggNOG OGsKOG2753@1|root,KOG2753@2759|Eukaryota
Descriptiontranslation initiation factor activity
Cds size648
COG categoryJ
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.9858005-CDS-P-wetherbeei_contig1692:5161..53101683186101.9858005-CDS-P-wetherbeei_contig1692:5161..5310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1692 5162..5310 +
1683186101.998039-CDS-P-wetherbeei_contig1692:5711..59191683186101.998039-CDS-P-wetherbeei_contig1692:5711..5919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1692 5712..5919 +
1683186102.0084023-CDS-P-wetherbeei_contig1692:6240..65311683186102.0084023-CDS-P-wetherbeei_contig1692:6240..6531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1692 6241..6531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1692.4.1prot_P-wetherbeei_contig1692.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1692 5162..6531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1692.4.1

>prot_P-wetherbeei_contig1692.4.1 ID=prot_P-wetherbeei_contig1692.4.1|Name=mRNA_P-wetherbeei_contig1692.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
TKKDVEGCFGILFAVLDRVGDVEEAPVLASEIAAALLDIVDDKAPLRLKL
VTYLYNMLPSRGPAQLEVLLSVVGYASRAKLLSMLSGFFAGVNDWLAGWE
LSAEDRRRIYLLMADVLAEVGEAEQSQRFLIKYLATFSGAPADALAAVRP
AAARGAAGAVRAPIVSFVEQHNLLGMDAVRQLKEDAKYGPLYQLLSIFSV
EKLDAYRAFHKVRSIL
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mRNA from alignment at P-wetherbeei_contig1692:5162..6531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1692.4.1 ID=mRNA_P-wetherbeei_contig1692.4.1|Name=mRNA_P-wetherbeei_contig1692.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1370bp|location=Sequence derived from alignment at P-wetherbeei_contig1692:5162..6531+ (Phaeothamnion wetherbeei SAG_119_79)
ACGAAAAAAGACGTGGAAGGATGCTTCGGGATCCTGTTCGCAGTGCTGGA TCGGGTGGGGGACGTGGAGGAGGCGCCGGTGCTGGCGTCGGAGATTGCGG CGGCGCTGCTCGACATCGTCGACGATAAGGCTCCGCTGCGCCTCAAGCTG TGAGTGTTTCGGAGTTATGAGCCCTTTTGCCGCAGCTGCACCGCCGCGGA ATCATTCCGCCGTCGCGATCTTTGTCTTTCCTTTGCCCTGGTCCCTTGCA TTGGCAATGGGCTGTTGTGTCGACGCCACATCCGTTGTTGCTGGCTGGTT GTCTGAGTCATATCGCTGTTCGGGCTGGAAAACCAGTTTTTCGTACCTCC TTGCAACGCCCCGTTTTTATTTGCTCTGGAAATTCTGCTTTTTGCTTCCT GCCAGCAGCCATGTCCCGGATCCTTTTTTGGAACAGAGATTTTGCTTGGT TTTGCAAGTTTCTTTTTACGTCTGGCCATCAAATCTCATCGGATAGATCG TATCGCCCGTTTTTCTTCGGCGATTAAAAACGAAACAAAACGAAAACCAG TGTGACGTACCTGTACAACATGCTGCCATCGCGGGGGCCGGCGCAGCTTG AGGTGCTGCTGAGCGTGGTGGGGTACGCGTCGCGGGCGAAGCTGCTGAGC ATGCTGTCGGGGTTCTTCGCGGGCGTCAACGACTGGCTGGCCGGGTGGGA GCTGTCGGCAGAGGACCGACGGCGCATCTACCTCCTCATGGCGGACGTCC TCGCCGAGGTGGGGCAGTGAGGGAGAGAAGTTAGGGAAGAAGGCGCAACC AGATGGAAGGATGAGAAAGGCGCGTGGGCTGGGGTGGAGGGGGGATGCGG AGTCGTCTGCTGTCTGCTGCCGCCAGTGGCTCGGGCGATGATCTGAAAGT GCGTGTTCTCCTCGTTTAACCGCGCTCTGTCGCCAGCTGACCAGGAAAGT TCCGCCGGCCAGCTCTGCTGAAAGGATTGGTAGATTGCCATCTCCGCGTG CTGTATCCGCAGCGGTAAATATCACCAAGGCAAATTATGTAATTTCTTAT CCTCCTTCTCCCTGCTGCGTTTCGCCCAGGTCGGGGAGGCGGAGCAGAGC CAGCGATTCCTCATCAAATACCTGGCGACCTTCAGCGGCGCCCCGGCCGA CGCTCTCGCCGCTGTTCGGCCCGCGGCGGCGCGCGGTGCGGCCGGCGCGG TACGGGCGCCCATCGTGAGCTTCGTGGAGCAGCACAACCTGCTGGGCATG GACGCCGTGCGGCAGCTGAAGGAAGACGCCAAGTACGGCCCGCTCTACCA GCTGCTGAGCATCTTTTCGGTCGAGAAGCTCGACGCTTACCGCGCCTTCC ACAAGGTGCGATCGATTTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1692:5162..6531+

>mRNA_P-wetherbeei_contig1692.4.1 ID=mRNA_P-wetherbeei_contig1692.4.1|Name=mRNA_P-wetherbeei_contig1692.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig1692:5162..6531+ (Phaeothamnion wetherbeei SAG_119_79)
ACGAAAAAAGACGTGGAAGGATGCTTCGGGATCCTGTTCGCAGTGCTGGA
TCGGGTGGGGGACGTGGAGGAGGCGCCGGTGCTGGCGTCGGAGATTGCGG
CGGCGCTGCTCGACATCGTCGACGATAAGGCTCCGCTGCGCCTCAAGCTT
GTGACGTACCTGTACAACATGCTGCCATCGCGGGGGCCGGCGCAGCTTGA
GGTGCTGCTGAGCGTGGTGGGGTACGCGTCGCGGGCGAAGCTGCTGAGCA
TGCTGTCGGGGTTCTTCGCGGGCGTCAACGACTGGCTGGCCGGGTGGGAG
CTGTCGGCAGAGGACCGACGGCGCATCTACCTCCTCATGGCGGACGTCCT
CGCCGAGGTCGGGGAGGCGGAGCAGAGCCAGCGATTCCTCATCAAATACC
TGGCGACCTTCAGCGGCGCCCCGGCCGACGCTCTCGCCGCTGTTCGGCCC
GCGGCGGCGCGCGGTGCGGCCGGCGCGGTACGGGCGCCCATCGTGAGCTT
CGTGGAGCAGCACAACCTGCTGGGCATGGACGCCGTGCGGCAGCTGAAGG
AAGACGCCAAGTACGGCCCGCTCTACCAGCTGCTGAGCATCTTTTCGGTC
GAGAAGCTCGACGCTTACCGCGCCTTCCACAAGGTGCGATCGATTTTA
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