mRNA_P-wetherbeei_contig1691.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1691.2.1
Unique NamemRNA_P-wetherbeei_contig1691.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: D8LC65_ECTSI (Casein kinase II alpha subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC65_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 7.150e-79
Identity = 127/190 (66.84%), Postives = 147/190 (77.37%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCT---PAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            QALD++HSRG+MHRDVKP N+V+NR T +LRLIDWGL DFYIPG+R M  VGSR+YKAPELLVG+RFYDYAVD+FS GC+LAG L  REPFFRG+DN DQLVRIA VLGT GL   +R+YDV +EP L   LG H +KPW + V            P  LDLLDRMLC+DHQ+RISAA+AL H FFD VR
Sbjct:  299 QALDFAHSRGLMHRDVKPRNIVINRRTRSLRLIDWGLGDFYIPGRRNMARVGSRYYKAPELLVGFRFYDYAVDIFSVGCMLAGFLLNREPFFRGKDNEDQLVRIALVLGTQGLHDFLRKYDVVLEPRLLEMLGTHRKKPWSSIVGGGGGGCGEAYGPDGLDLLDRMLCYDHQDRISAAEALSHAFFDPVR 488          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: A0A835Z732_9STRA (Casein kinase II subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z732_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.750e-73
Identity = 120/187 (64.17%), Postives = 144/187 (77.01%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            QALD+SHS G+MHRDVKP NV++N  T  LRLIDWGL DFYIPG+RY V VGSR+YKAPELL    +YDY+VD+FSAGCVLAGLL RREPFFRGRDN DQLVRI CVLGTA L   ++RY + ++ +L  ALG H+ K W ++V  + + L + AA DLL RML +DHQERI+A  A+ H FFD VR
Sbjct:  162 QALDFSHSCGVMHRDVKPRNVIINHGTRELRLIDWGLGDFYIPGRRYAVRVGSRYYKAPELL----YYDYSVDMFSAGCVLAGLLLRREPFFRGRDNEDQLVRICCVLGTAPLFAYLKRYGILLDAKLAAALGAHAAKDWWSFVNSDNSELVSDAAFDLLSRMLRFDHQERITAKAAMAHAFFDDVR 344          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: K8F164_9CHLO (Protein kinase domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F164_9CHLO)

HSP 1 Score: 232 bits (592), Expect = 1.190e-68
Identity = 106/187 (56.68%), Postives = 141/187 (75.40%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            +ALD+SHS+GIMHRDVKP N++++ +   LRLIDWGLA+FY  GK Y V V SR++K PELLV  + YDYA+D++S GCV AG++FR+EPFF G DN DQLVRIA VLGT  L   + +Y + ++P L+  +G+HSRKPW  +V  +   L TP A+D LD++L +DHQERI+A +A +HPFFD VR
Sbjct:  152 KALDFSHSQGIMHRDVKPHNIMIDHEKRQLRLIDWGLAEFYHAGKEYNVRVASRYFKGPELLVDLQDYDYALDLWSLGCVFAGMIFRKEPFFNGHDNYDQLVRIAKVLGTQELHAYLNKYRIELDPHLEALVGRHSRKPWSKFVNADNQHLVTPEAIDFLDKLLRYDHQERITAKEAQKHPFFDPVR 338          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: UPI001C255D7D (casein kinase II subunit alpha-2-like n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C255D7D)

HSP 1 Score: 229 bits (585), Expect = 1.200e-68
Identity = 101/187 (54.01%), Postives = 143/187 (76.47%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            +ALDYSHS+GIMHRDVKP NV+++ +   LRLIDWGLA+FY PGK Y V V SR++K PELLV  + YDY++D++S GC+ AG++F++EPFF G DN DQLV+IA VLGT  L  C+ +Y + ++P+L+  +G+HSRKPW  +V  +   L +P A+D LD++L +DHQ+R++A +A+ HP+F  VR
Sbjct:   67 KALDYSHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFQKEPFFYGHDNQDQLVKIAKVLGTDELNACLHKYRLELDPQLEALVGRHSRKPWSKFVNSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVR 253          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: A0A7G2CAU8_9TRYP (Protein kinase domain/Protein tyrosine kinase, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2CAU8_9TRYP)

HSP 1 Score: 226 bits (577), Expect = 2.610e-68
Identity = 105/194 (54.12%), Postives = 139/194 (71.65%), Query Frame = 2
Query:  905 HPVGQPKQALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            H + Q   AL+Y+H  GIMHRDVKP N+ ++    TL+LIDWGLA+FY P   Y   V SR++K PELLV    YDY +D++S GC+LAG++F REPFFRG+DNNDQLVRIA VLGT GL   + +Y++ +   LQ A+G+H+RKPW  ++TP  A LC P AL+ LD +L +DH ERI A +A++H +FD VR
Sbjct:    5 HYIYQVLVALEYAHQHGIMHRDVKPNNICIDHQKRTLKLIDWGLAEFYHPSTMYNARVASRYFKGPELLVELSTYDYRLDMWSLGCMLAGIIFMREPFFRGKDNNDQLVRIARVLGTDGLYAYLSKYNLTLNAALQEAVGRHTRKPWTMFITPACAPLCPPEALEFLDLLLRYDHTERIQAREAMKHRYFDPVR 198          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: A0A835Y0N8_9CHLO (Protein kinase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0N8_9CHLO)

HSP 1 Score: 231 bits (589), Expect = 3.730e-68
Identity = 106/187 (56.68%), Postives = 140/187 (74.87%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            +AL Y HS GIMHRDVKP NV+++     LRLIDWGLA+FY P + + V V SR++K PELLV Y+ YDY++D++S GC+LA ++FR+EPFF G DN DQLV+IA VLGT  L   + +Y + ++P+ +  LG HSRKPW  +VTP+ A L TP ALD +D++L +DHQERIS+ DAL HP+FD VR
Sbjct:  157 KALQYCHSMGIMHRDVKPHNVMIDHSRRQLRLIDWGLAEFYFPEREFNVRVASRYFKGPELLVDYQLYDYSLDMWSLGCMLAAIIFRKEPFFFGHDNYDQLVKIARVLGTEELYAYLDKYGLELDPQQEALLGSHSRKPWTKFVTPDNAHLATPEALDFIDKLLRYDHQERISSKDALLHPYFDPVR 343          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: UPI001D086D48 (casein kinase II subunit alpha-like n=2 Tax=Coccinellini TaxID=263631 RepID=UPI001D086D48)

HSP 1 Score: 230 bits (587), Expect = 6.560e-68
Identity = 107/183 (58.47%), Postives = 138/183 (75.41%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFF 1474
            QALDY HS GIMHRDVKP NV+++ +T TLRLIDWGLA+FY PG+ Y V V SR++K PELLV ++ YDY++D++S GC+LA ++F+REPFF G DN DQLVRIA VLGT  L R + +Y V ++P     LG+HSRK WE +V  E   L TP ALD LDR+L +DH ER++A +A+ HP+F
Sbjct:  140 QALDYCHSMGIMHRDVKPHNVMIDPETKTLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDFQMYDYSLDMWSLGCMLASMIFKREPFFHGHDNYDQLVRIAKVLGTDDLFRYIEKYGVELDPRFNDILGRHSRKRWERFVNRENQHLVTPEALDFLDRLLRYDHAERLTAREAMDHPYF 322          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: A0A2G5DKT9_AQUCA (Protein kinase domain-containing protein n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5DKT9_AQUCA)

HSP 1 Score: 229 bits (584), Expect = 1.440e-67
Identity = 102/187 (54.55%), Postives = 142/187 (75.94%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            +ALDY HS+G+MHRDVKP NV+++     LRLIDWGLA+FY PGK Y V V SRHYK PELLV  + YDY++D++S GC+ AG++FR+E FF G DN+DQLV+IA VLGT  L   +++YD+ +EP+L   +G+HSRKPW+ ++  +   L +P A+D LD++L +DHQER++A +A+ HP+F  VR
Sbjct:  137 KALDYCHSQGVMHRDVKPHNVMIDHKLQKLRLIDWGLAEFYHPGKEYNVRVASRHYKGPELLVDLQEYDYSLDMWSLGCMFAGMIFRKETFFNGHDNDDQLVKIAKVLGTDELSSYLKKYDLELEPQLAALVGRHSRKPWDRFINADNQHLVSPEAIDFLDKLLRYDHQERLTAREAMDHPYFFQVR 323          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: C5X7B1_SORBI (Protein kinase domain-containing protein n=14 Tax=Mesangiospermae TaxID=1437183 RepID=C5X7B1_SORBI)

HSP 1 Score: 229 bits (583), Expect = 1.970e-67
Identity = 100/187 (53.48%), Postives = 143/187 (76.47%), Query Frame = 2
Query:  926 QALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            +ALDY HS+GIMHRDVKP NV+++ +   LRLIDWGLA+FY PGK Y V V SR++K PELLV  + YDY++D++S GC+ AG++FR+EPFF G DN+DQLV+IA VLGT GL   + +Y + ++P+L+  +G+HSRKPW  ++  +   L +P A+D LD++L +DHQ+R++A +A+ HP+F  VR
Sbjct:  137 KALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNAYLNKYRIELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFQQVR 323          
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Match: A0A2U1MVP8_ARTAN (Casein kinase II subunit alpha-2 n=2 Tax=asterids TaxID=71274 RepID=A0A2U1MVP8_ARTAN)

HSP 1 Score: 226 bits (577), Expect = 2.180e-67
Identity = 101/188 (53.72%), Postives = 142/188 (75.53%), Query Frame = 2
Query:  923 KQALDYSHSRGIMHRDVKPWNVVLNRDTGTLRLIDWGLADFYIPGKRYMVLVGSRHYKAPELLVGYRFYDYAVDVFSAGCVLAGLLFRREPFFRGRDNNDQLVRIACVLGTAGLERCVRRYDVAVEPELQRALGQHSRKPWEAYVTPETAALCTPAALDLLDRMLCWDHQERISAADALRHPFFDAVR 1486
            K+ALDY HS+GIMHRDVKP NV+++ +   LRLIDWGLA+FY PGK Y V V SR++K PELLV  + YDY++D++S GC+ AG++FR+EPFF G DN DQLV+IA VLGT  L   + +Y + +EP+L+  +G+HSRKPW  ++  +   L +P A+D LD++L +DHQ+R++A +A+ HP+F  VR
Sbjct:   71 KKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIARVLGTDELNAYLNKYQLELEPQLEALVGRHSRKPWSKFMNADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMSHPYFMQVR 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1691.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC65_ECTSI7.150e-7966.84Casein kinase II alpha subunit n=1 Tax=Ectocarpus ... [more]
A0A835Z732_9STRA1.750e-7364.17Casein kinase II subunit alpha n=1 Tax=Tribonema m... [more]
K8F164_9CHLO1.190e-6856.68Protein kinase domain-containing protein n=1 Tax=B... [more]
UPI001C255D7D1.200e-6854.01casein kinase II subunit alpha-2-like n=1 Tax=Salv... [more]
A0A7G2CAU8_9TRYP2.610e-6854.12Protein kinase domain/Protein tyrosine kinase, put... [more]
A0A835Y0N8_9CHLO3.730e-6856.68Protein kinase domain-containing protein n=1 Tax=E... [more]
UPI001D086D486.560e-6858.47casein kinase II subunit alpha-like n=2 Tax=Coccin... [more]
A0A2G5DKT9_AQUCA1.440e-6754.55Protein kinase domain-containing protein n=3 Tax=T... [more]
C5X7B1_SORBI1.970e-6753.48Protein kinase domain-containing protein n=14 Tax=... [more]
A0A2U1MVP8_ARTAN2.180e-6753.72Casein kinase II subunit alpha-2 n=2 Tax=asterids ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1691contigP-wetherbeei_contig1691:2655..4910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC65
PFAMsPkinase
Model size1486
Max annot lvl2759|Eukaryota
KEGG koko:K03097
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Hectar predicted targeting categorysignal peptide
Exons5
Evalue8e-44
EggNOG OGsKOG0668@1|root,KOG0668@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size942
COG categoryF
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1691.2.1prot_P-wetherbeei_contig1691.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1691 2655..3999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.6646152-CDS-P-wetherbeei_contig1691:2654..29391683186101.6646152-CDS-P-wetherbeei_contig1691:2654..2939Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1691 2655..2939 +
1683186101.673957-CDS-P-wetherbeei_contig1691:3146..32481683186101.673957-CDS-P-wetherbeei_contig1691:3146..3248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1691 3147..3248 +
1683186101.6829267-CDS-P-wetherbeei_contig1691:3444..39991683186101.6829267-CDS-P-wetherbeei_contig1691:3444..3999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1691 3445..3999 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.690866-UTR-P-wetherbeei_contig1691:3999..41261683186101.690866-UTR-P-wetherbeei_contig1691:3999..4126Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1691 4000..4126 +
1683186101.7004654-UTR-P-wetherbeei_contig1691:4258..43111683186101.7004654-UTR-P-wetherbeei_contig1691:4258..4311Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1691 4259..4311 +
1683186101.7127736-UTR-P-wetherbeei_contig1691:4546..49101683186101.7127736-UTR-P-wetherbeei_contig1691:4546..4910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1691 4547..4910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1691.2.1

>prot_P-wetherbeei_contig1691.2.1 ID=prot_P-wetherbeei_contig1691.2.1|Name=mRNA_P-wetherbeei_contig1691.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=314bp
MRSSRHRERAKAPRHDACACSFLLHSWSLLLAVLLLCCGEIVAEVRSVSK
VYHSVCLQKGQQYWDYDSYALTSMATESVDSFEITRRLDSGKFSQVMEAI
DIRDNRLVVLKILKPVQPKKVKREICILQTLAGGPNIVALEGVCRDEETD
TTCLVLEHLGPGARWLAHGGPRHSAAATFAAAAAAAPPTAPEPLLSSAAE
AMSGAGAAADQATSPSAVEMKLSDTDVKCFMYRLLEVSIFSESTMWIILR
AAPSSLFSLKRRRCWSSNGLLAVADGRQGAGSLSKASPMRWNIPRLIVLA
KPPGGPTKAGPGL*
back to top

mRNA from alignment at P-wetherbeei_contig1691:2655..4910+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1691.2.1 ID=mRNA_P-wetherbeei_contig1691.2.1|Name=mRNA_P-wetherbeei_contig1691.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2256bp|location=Sequence derived from alignment at P-wetherbeei_contig1691:2655..4910+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAAGTTCAAGGCATCGAGAGAGAGCAAAAGCACCGAGACACGACGC ATGTGCTTGCTCCTTCCTTTTGCACTCCTGGAGCCTCCTGCTCGCTGTGC TCTTGCTCTGTTGCGGCGAAATTGTTGCAGAAGTGAGAAGCGTCAGCAAA GTGTACCATTCGGTATGCCTTCAAAAAGGTCAACAATATTGGGATTACGA CTCGTACGCCCTCACGTCTATGGCGACGGAGTCTGTAGATTCTTTCGAGA TCACTCGCAGACTTGACAGCGGAAAATTCAGCCAGGTGAGCAGCTTTTCT CTTGTGAAACCCACTTCCCTTGCCTTGTTCTCCGTTGCTTCCCAGATGGC AATAGAGCTTTAAAGTGAATTTAGCTTCGAAACCACCCATACATTTGATT GGAAACAAATTAGCAAGGCGAACGTTTCTTTCAACAGCTCCATGCAACTC GTTCCTAGTTCCGGCGATCCGTCGATCTGCATCGTCGATCAGGTCATGGA GGCAATAGACATTCGCGATAACCGGCTGGTCGTTCTCAAAATTCTCAAGC CGGTGCAGCCGAAAAAGGTCAAGCGCGAGATTTGCATCCTGCAGGTGAGC TTGAAGAGTGGTGCTAGGCAGCTCAGCGGGCTGAGGCAGCGATCACTTTA TGCCATGCATGCTTTCAAATTTCCATTTCGAGCCGCCGATTTCCTTTCAG ATACGTTCTCTTCTTCCCCGAAGTCGTTCATCCGTGACCGTAATCGCTCC TTCGCCCGATCCCTCTTAACTCACATCACCTCACCGCCAGACGCTGGCAG GCGGCCCCAACATCGTGGCGCTGGAAGGCGTATGCCGCGATGAGGAGACT GACACGACCTGCCTCGTCCTCGAGCACCTCGGCCCGGGGGCGCGGTGGCT CGCCCACGGCGGCCCGCGCCACTCCGCAGCCGCCACATTCGCCGCGGCAG CAGCGGCGGCTCCGCCGACGGCGCCGGAACCTTTACTGTCCTCTGCGGCG GAGGCGATGTCGGGGGCGGGGGCGGCGGCTGATCAGGCGACGTCTCCTAG CGCTGTCGAAATGAAGCTGTCCGATACAGACGTGAAGTGCTTCATGTACC GGCTGTTAGAAGTGAGTATCTTCTCTGAATCTACGATGTGGATCATCTTG CGTGCAGCGCCGTCGAGCCTCTTTTCCCTGAAAAGGAGGCGTTGCTGGAG CTCGAATGGCTTGTTGGCTGTGGCTGACGGCAGGCAGGGAGCTGGTTCTC TTTCAAAGGCATCGCCGATGCGCTGGAACATCCCCCGCCTCATCGTTCTC GCAAAACCACCCGGTGGGCCAACCAAAGCAGGCCCTGGACTATAGCCACT CGCGCGGCATCATGCACCGCGACGTCAAGCCGTGGAATGTCGTGCTCAAC CGCGACACGGGTACGCTGCGGCTCATTGACTGGGGGCTCGCAGACTTCTA CATTCCCGGGAAACGGTACATGGTGCGTGCCCCCTGTCTACCTTCTCAAA GCCGCGTTATGTGATTGGATGTTGAGATCTTCTTCGTACTGTAATAGACT CCCTTTCACAGTTAATAATTATTGTACCGTCCGCTTCGCCTTTAATGATG ACAGGTGCTGGTCGGGTCGCGGCATTACAAGGCGCCGGAGCTTCTGGTCG GATATAGGTAAGGGCTTGAACAAAAGAATCTAGAGCTTGAGCTCTGTCGG ACAGTATCGGGGAAAAGGGTGTTCTCAGCATCCAGGGAGGCGCGCACCAG CGATTCGAACCAACGCTCTAATTTCTTCTTTCTCTATGCGTCATTTCTTG ATATCGCGCCCATCTTCCTCGCTCGGCGGCGGGGCGGCGACCATGCACCC CTTCCCCCTCCCCCCGGTACACACACAAATAAATCGCCGCAGATTTTACG ACTACGCGGTGGACGTGTTCAGCGCCGGCTGCGTGCTGGCGGGGCTGCTC TTCCGGCGCGAGCCCTTCTTCCGCGGCCGCGACAACAACGACCAGCTCGT CCGCATCGCGTGTGTGCTTGGCACGGCGGGTCTGGAGCGCTGCGTGCGCC GCTACGACGTGGCCGTGGAGCCGGAGCTGCAGCGGGCACTGGGCCAGCAC AGTCGCAAGCCGTGGGAGGCGTACGTAACGCCCGAGACGGCCGCGCTCTG CACGCCAGCGGCGCTCGACCTGCTGGACCGCATGCTCTGCTGGGACCATC AGGAGCGCATATCGGCGGCGGACGCGCTCCGGCACCCGTTTTTCGACGCC GTGAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1691:2655..4910+

>mRNA_P-wetherbeei_contig1691.2.1 ID=mRNA_P-wetherbeei_contig1691.2.1|Name=mRNA_P-wetherbeei_contig1691.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=942bp|location=Sequence derived from alignment at P-wetherbeei_contig1691:2655..4910+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAAGTTCAAGGCATCGAGAGAGAGCAAAAGCACCGAGACACGACGC
ATGTGCTTGCTCCTTCCTTTTGCACTCCTGGAGCCTCCTGCTCGCTGTGC
TCTTGCTCTGTTGCGGCGAAATTGTTGCAGAAGTGAGAAGCGTCAGCAAA
GTGTACCATTCGGTATGCCTTCAAAAAGGTCAACAATATTGGGATTACGA
CTCGTACGCCCTCACGTCTATGGCGACGGAGTCTGTAGATTCTTTCGAGA
TCACTCGCAGACTTGACAGCGGAAAATTCAGCCAGGTCATGGAGGCAATA
GACATTCGCGATAACCGGCTGGTCGTTCTCAAAATTCTCAAGCCGGTGCA
GCCGAAAAAGGTCAAGCGCGAGATTTGCATCCTGCAGACGCTGGCAGGCG
GCCCCAACATCGTGGCGCTGGAAGGCGTATGCCGCGATGAGGAGACTGAC
ACGACCTGCCTCGTCCTCGAGCACCTCGGCCCGGGGGCGCGGTGGCTCGC
CCACGGCGGCCCGCGCCACTCCGCAGCCGCCACATTCGCCGCGGCAGCAG
CGGCGGCTCCGCCGACGGCGCCGGAACCTTTACTGTCCTCTGCGGCGGAG
GCGATGTCGGGGGCGGGGGCGGCGGCTGATCAGGCGACGTCTCCTAGCGC
TGTCGAAATGAAGCTGTCCGATACAGACGTGAAGTGCTTCATGTACCGGC
TGTTAGAAGTGAGTATCTTCTCTGAATCTACGATGTGGATCATCTTGCGT
GCAGCGCCGTCGAGCCTCTTTTCCCTGAAAAGGAGGCGTTGCTGGAGCTC
GAATGGCTTGTTGGCTGTGGCTGACGGCAGGCAGGGAGCTGGTTCTCTTT
CAAAGGCATCGCCGATGCGCTGGAACATCCCCCGCCTCATCGTTCTCGCA
AAACCACCCGGTGGGCCAACCAAAGCAGGCCCTGGACTATAG
back to top