prot_P-wetherbeei_contig169.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig169.2.1
Unique Nameprot_P-wetherbeei_contig169.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length108
Homology
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.280e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0
Query:    6 VRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTR--CAAFDGSKWRGGRLRVHLAKGDFRARLTAEW 102
            VRLHVGGL   V  +++AAL ++ + S  G    + E+MRDA TGI RGFG+V + GG+          AA+DG++W+GG++RV  AKGD+  RL AEW
Sbjct:   11 VRLHVGGLARGVDPNELAALIARTLPS--GTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEW 107          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.870e-10
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   44 MRDAITGIARGFGFVEVAGGDADNIVTR--CAAFDGSKWRGGRLRVHLAKGDFRARLTAEWREAEEK 108
            MRDA TGI RGFG+V + GG+          AA++G++W+GG++RV  AKGD+  RL AEW  A +K
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKK 67          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 65.5 bits (158), Expect = 3.930e-10
Identity = 41/100 (41.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:    3 VGVVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEW 102
            VG +RL VGGLP DV   ++ A F        G  V S  V +    G  RGFG+V++      ++    A ++G+KWRGGRLRV  A+  F  RL AEW
Sbjct:   28 VGRIRLFVGGLPADVTPEELQARFQPF-----GKVVGSEIVPQKEDAGTCRGFGYVDLEPVSEASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEW 122          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A3N5Y7F9_9BACT (RNA-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5Y7F9_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 6.260e-8
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    7 RLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVA 61
            RL+VG LP+ + + D+ ALFS+A      G V +V+VMRD+ITG ARGFGFVE+A
Sbjct:    4 RLYVGNLPYKMTDEDLRALFSQA------GAVDNVQVMRDSITGRARGFGFVEMA 52          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: H3H1F6_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1F6_PHYRM)

HSP 1 Score: 58.9 bits (141), Expect = 7.520e-8
Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = 0
Query:    6 VRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITG-------IARGFGFVEVAGGDADNIVTRCA-AFDGSKWRGGRLRVHLAKGDFRARLTAEWREAE 106
            VR++VGGLP D +  ++   F + + SA    +  VE+ +    G        +RGF ++ + G DA+    +    F+ +KWRGG L+V +A+  FR +L  EW EA+
Sbjct:    4 VRVYVGGLPADAKTQELRERFGRFVSSAADCELQDVELPKPKPVGDVPPPPGASRGFAYLTLRGADAETQSDKLQKTFNRTKWRGGLLKVQVARPHFRVKLEQEWAEAQ 112          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A8J4BQ41_9CHLO (RRM domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BQ41_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 7.710e-8
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 0
Query:    5 VVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMR---DAITGIA------------RGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEWRE 104
            VVRL +GGLPHD+  +D+ + FS        G V ++E++       T +A            RGF +VE+   D  ++    + ++ SKWRG  LRV LAK  + ARL  EW+E
Sbjct:    2 VVRLFLGGLPHDISAADLRSRFSPF------GKVEAIEIIPPKDQTTTAVAQTSFQTLSGEKCRGFAYVELDPKDEASVHKCLSVYNNSKWRGNVLRVELAKPIYLARLHVEWQE 110          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A8J4GGV9_9CHLO (RRM domain-containing protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GGV9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.960e-7
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 0
Query:    5 VVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMR---DAITGIA-------------RGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEWRE 104
            VVRL +GGLPHD+  +D+ + F+        G V S++++    + IT  A             RGF ++E+   D  +I    + ++ SKWRG  LRV LAK  + ARL  EW+E
Sbjct:    2 VVRLFLGGLPHDISAADLRSRFNPF------GKVESIDIIPPKDNQITTAAVPTSTQTSNGPTCRGFAYIELDPKDEVSIHKCLSVYNNSKWRGNVLRVELAKPSYLARLHVEWQE 111          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A2M8D9Y6_9BACT (RNA-binding protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2M8D9Y6_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.200e-6
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 0
Query:    8 LHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAK 91
            L+VG LP++  E ++  LF      AE G V SV ++ D +TG++RGFGFV++   +A       AA +G+ ++G  LRV+++K
Sbjct:    5 LYVGNLPYNASEDELRNLF------AEHGPVESVRIITDRVTGLSRGFGFVDMETDEAAEAAI--AALNGADFKGRALRVNVSK 80          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A0T5PFZ8_9ALTE (RNA-binding protein n=4 Tax=Alishewanella TaxID=111142 RepID=A0A0T5PFZ8_9ALTE)

HSP 1 Score: 53.5 bits (127), Expect = 1.760e-6
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0
Query:    8 LHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFD 76
            L+VG LP+   E  V ALFS+       G V +V +M+D  TG  RGFGFVEVA  DA+ ++T+   F+
Sbjct:   80 LYVGNLPYRANEDAVKALFSRY------GTVVNVRLMKDRQTGRRRGFGFVEVAAADANQMITKLNDFE 142          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A7Y4SI48_9BACT (RNA-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4SI48_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.680e-6
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 0
Query:    7 RLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGG-DADNIVTR 71
            +L VG LP++  E D+ +LF +A      G V +V VMRD +TG ARGF FVE+A   DA   +T+
Sbjct:    4 KLFVGNLPYETAEQDLESLFGQA------GQVETVSVMRDRVTGRARGFAFVEMASDEDAQKAITQ 63          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FS94_ECTSI1.280e-1747.47RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVR0_9PHAE1.870e-1049.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1HXN5_KLENI3.930e-1041.00Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
A0A3N5Y7F9_9BACT6.260e-856.36RNA-binding protein n=1 Tax=Acidobacteria bacteriu... [more]
H3H1F6_PHYRM7.520e-833.03RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A8J4BQ41_9CHLO7.710e-835.65RRM domain-containing protein n=1 Tax=Volvox afric... [more]
A0A8J4GGV9_9CHLO1.960e-735.34RRM domain-containing protein n=3 Tax=Volvox retic... [more]
A0A2M8D9Y6_9BACT1.200e-638.10RNA-binding protein n=2 Tax=unclassified Acidobact... [more]
A0A0T5PFZ8_9ALTE1.760e-644.93RNA-binding protein n=4 Tax=Alishewanella TaxID=11... [more]
A0A7Y4SI48_9BACT2.680e-645.45RNA-binding protein (Fragment) n=1 Tax=Acidobacter... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..88
e-value: 2.1E-7
score: 40.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..60
e-value: 1.3E-6
score: 28.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..92
score: 13.907712
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..107
e-value: 3.5E-14
score: 55.0
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig169contigP-wetherbeei_contig169:11262..11585 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig169.2.1mRNA_P-wetherbeei_contig169.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig169 11256..11585 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig169.2.1 ID=prot_P-wetherbeei_contig169.2.1|Name=mRNA_P-wetherbeei_contig169.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MTVGVVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITG
IARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTA
EWREAEEK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf