mRNA_P-wetherbeei_contig16878.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: UPI0019A3CBB1 (Helix-turn-helix transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019A3CBB1) HSP 1 Score: 374 bits (960), Expect = 2.390e-130 Identity = 177/211 (83.89%), Postives = 198/211 (93.84%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
MF+HKQVW AIDTIAERYGFSASGL+KKSGLDPTSFNPSKR GPDGRPRWPTTESIA +L A+GA++EEF+DLL+GRKG PP+RKQIPLLG ARAGKGG+FDDSGFP+G+GWDEID PG+TD AYALEITG+SM+PVYREGDTIIVSPSAT+RKGDRVVVKTTDGQVMAK+MQRQTAK +ELASFN DH T+T DMKDVDW+ARI+WASQ
Sbjct: 1 MFTHKQVWNAIDTIAERYGFSASGLSKKSGLDPTSFNPSKRTGPDGRPRWPTTESIARVLVASGASIEEFTDLLTGRKGHPPRRKQIPLLGFARAGKGGYFDDSGFPAGSGWDEIDAPGITDQNAYALEITGESMVPVYREGDTIIVSPSATLRKGDRVVVKTTDGQVMAKIMQRQTAKTLELASFNPDHPTKTFDMKDVDWIARIMWASQ 211
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: A0A2W2B269_9HYPH (Helix-turn-helix transcriptional regulator n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2B269_9HYPH) HSP 1 Score: 364 bits (935), Expect = 1.540e-126 Identity = 176/211 (83.41%), Postives = 195/211 (92.42%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
M +HKQVW AIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPT ESI+ LL+A+GA++EEFS+LL GR+GQPPK +QIPLLGLA+AGKGGFFDDSGFPSGNGWDEIDVPGVTD +YALEITGDSMLPVYREGD II+SPSA VRKGDRVVV+ DGQVMAKVMQRQT+K +ELASFN +H T+ LDMKDVDW+ARI+WASQ
Sbjct: 1 MLTHKQVWNAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTMESISRLLQASGASMEEFSELLIGRRGQPPKLRQIPLLGLAKAGKGGFFDDSGFPSGNGWDEIDVPGVTDPNSYALEITGDSMLPVYREGDIIILSPSAAVRKGDRVVVRLNDGQVMAKVMQRQTSKTLELASFNPNHATKNLDMKDVDWIARIMWASQ 211
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: UPI0018C5084F (helix-turn-helix transcriptional regulator n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C5084F) HSP 1 Score: 357 bits (917), Expect = 8.550e-124 Identity = 171/211 (81.04%), Postives = 193/211 (91.47%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
MF+ KQVW+AIDTIAERYGFSASGLAKK+GLDPTSFNPSKR PDGRPRWPT ESI+ +L A+GA+VEEF DLLSGRKG PP+ KQIPLLG+A+AGKGGFFDDSGFP+G GW+EIDVPGVTD +AYALEITGDSM+PVYREGD I+VSPSAT+RKGDRVVV+T DGQVMAKVMQRQTA+ +ELASFN H+T+ DMKD+DWMARIIWASQ
Sbjct: 1 MFTQKQVWSAIDTIAERYGFSASGLAKKAGLDPTSFNPSKRASPDGRPRWPTMESISLVLGASGASVEEFMDLLSGRKGAPPRLKQIPLLGIAKAGKGGFFDDSGFPAGTGWEEIDVPGVTDPSAYALEITGDSMVPVYREGDIIVVSPSATIRKGDRVVVRTNDGQVMAKVMQRQTARTLELASFNTSHETKVFDMKDIDWMARIIWASQ 211
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: A0A847ZRF7_9HYPH (Helix-turn-helix transcriptional regulator n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZRF7_9HYPH) HSP 1 Score: 355 bits (912), Expect = 4.940e-123 Identity = 169/211 (80.09%), Postives = 190/211 (90.05%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
MF+HKQVW AID IAERYGFSASGLAKK+GLDPTSFNPSKRNGPDGRPRWPT ESI +L A+GA VEEF +LL GRKG P K + +P+LG A+AGKGGFFDDSGFP+GNGWDE+DVPGVTDN AYALEITGDSM+PVYREGDTIIVSPSAT+RKGDRVVV+T DGQVMAKVM RQTAK++ELASFN +H + L+MK+VDW+ARIIWASQ
Sbjct: 1 MFTHKQVWNAIDVIAERYGFSASGLAKKAGLDPTSFNPSKRNGPDGRPRWPTMESIQRVLNASGAPVEEFMELLMGRKGAPSKLRVLPILGFAKAGKGGFFDDSGFPAGNGWDEVDVPGVTDNAAYALEITGDSMMPVYREGDTIIVSPSATIRKGDRVVVRTADGQVMAKVMHRQTAKSIELASFNPEHANKVLEMKNVDWVARIIWASQ 211
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: A0A537NXV3_9PROT (Helix-turn-helix transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NXV3_9PROT) HSP 1 Score: 338 bits (867), Expect = 3.540e-116 Identity = 154/211 (72.99%), Postives = 186/211 (88.15%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
MF+HKQVW AID IAERYGFSASGLAKK+GLDPTSFNPSKR+GPDGRPRWPTTESIA +LEA+GA+VEEFSDLL+GRKGQPPKR+QIPL+G + GK GFFDDSG+P G WDEI+ PG+ D AYA+EI GDSMLPVYREGD +IVSPS ++RKGDRV+ +TT+G+V+A+++ RQ+AK VELA+FN + R++DMKD+DW+ARIIWA Q
Sbjct: 1 MFTHKQVWTAIDVIAERYGFSASGLAKKAGLDPTSFNPSKRHGPDGRPRWPTTESIARVLEASGASVEEFSDLLAGRKGQPPKRRQIPLIGFTQVGKSGFFDDSGYPVGTSWDEIEAPGIIDQNAYAVEIQGDSMLPVYREGDIVIVSPSTSIRKGDRVIARTTNGEVLARILHRQSAKTVELAAFNPSEEIRSIDMKDIDWIARIIWAGQ 211
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: UPI0019085DD2 (helix-turn-helix transcriptional regulator n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019085DD2) HSP 1 Score: 337 bits (864), Expect = 1.020e-115 Identity = 155/211 (73.46%), Postives = 188/211 (89.10%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
MF+HKQVW AID IAERYGFSASGLAKK+GLDPTSFNPSKR+GPDGRPRWPTTESIA +LEA+GA++EEFSDLLSGRKGQPPKR+QIPL+ ++AGK GFFDDSGFP+G WDEI+ PGV D AYA+EI G+ MLPVYREGD +IVSPS ++RKGDRV+V+ T+G+VMA+++ RQ+AK VEL+SFN + R+++MKD+DW+ARIIWASQ
Sbjct: 1 MFTHKQVWTAIDVIAERYGFSASGLAKKAGLDPTSFNPSKRHGPDGRPRWPTTESIARVLEASGASIEEFSDLLSGRKGQPPKRRQIPLIAYSQAGKPGFFDDSGFPTGTAWDEIEAPGVIDQNAYAVEIQGEGMLPVYREGDIVIVSPSTSIRKGDRVIVRMTNGEVMARILHRQSAKTVELSSFNPAEEVRSIEMKDIDWIARIIWASQ 211
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: A0A126P2U2_9HYPH (DNA-binding protein n=10 Tax=Hyphomicrobiales TaxID=356 RepID=A0A126P2U2_9HYPH) HSP 1 Score: 282 bits (722), Expect = 3.940e-94 Identity = 136/211 (64.45%), Postives = 172/211 (81.52%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
M SH Q+W AID +A+RYGF+ASGLA+K+GLD T+FN SKR GPDGR RWP+TESIA +L+A GA+++EF ++ R+G P R IPL+G A+AG GGFFDD GFP G GW+E+ PGV D AYALEI GDSMLP+YR+GDTIIVSP+ATVR+GDRVVVKTT+G+V+AK ++RQTA+ VELAS N +H R L++ D+ +MAR+IWASQ
Sbjct: 1 MLSHDQIWTAIDALAQRYGFTASGLARKAGLDATTFNRSKRIGPDGRERWPSTESIAKILQATGASLDEFMAVVM-RRGPAPSRT-IPLIGFAQAGSGGFFDDGGFPVGTGWEEVAFPGVADEKAYALEIAGDSMLPLYRDGDTIIVSPTATVRRGDRVVVKTTEGEVLAKQLRRQTARTVELASLNPEHPERVLNLTDIAFMARVIWASQ 209
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: A0A0N0MD50_9HYPH (DNA-binding protein n=4 Tax=Bosea TaxID=85413 RepID=A0A0N0MD50_9HYPH) HSP 1 Score: 280 bits (715), Expect = 4.580e-93 Identity = 134/211 (63.51%), Postives = 173/211 (81.99%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
M SH Q+W+AID +A+RYGF+ASGLA+K+GLD T+FN SKR GPDGR RWP+TESIA +L+A GA+++EF ++ R+G P R IPL+G A+AG GGFFDD GFP G GW+E+ PGV D AYALEI+GDSMLP+YR+GDTIIVSP+ATVR+GDRVVVKT +G+V+AK ++RQTAK +ELAS N H R+L++ ++ +MAR+IWASQ
Sbjct: 1 MLSHDQIWSAIDALAQRYGFTASGLARKAGLDATTFNRSKRIGPDGRERWPSTESIAKILQATGASLDEFMSVVM-RRGAAPART-IPLIGFAQAGSGGFFDDGGFPVGTGWEEVAFPGVADEKAYALEISGDSMLPLYRDGDTIIVSPTATVRRGDRVVVKTVEGEVLAKQLKRQTAKTIELASLNPAHADRSLNLSEIAFMARVIWASQ 209
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: A0A841LR21_9HYPH (Phage repressor protein C with HTH and peptisase S24 domain n=1 Tax=Paenochrobactrum gallinarii TaxID=643673 RepID=A0A841LR21_9HYPH) HSP 1 Score: 277 bits (709), Expect = 4.750e-92 Identity = 126/216 (58.33%), Postives = 170/216 (78.70%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPP-----KRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
MFSH VWAAID +AERY S SGLA+++GLDPT+FN SKR+ DGR RWP+TES+A +++A GA+ EEFS L+SG+ P + + IPLLG+A AG GGFFDD+GFP+G GWD ++ P ++ YALE++GDSMLP+YR+GDT+IVSP+A+VR+GDRVVVKT +G+VMAK++QRQT +N+EL S N +H RT + ++W+AR++WASQ
Sbjct: 1 MFSHDSVWAAIDALAERYSLSPSGLARRAGLDPTAFNKSKRHAADGRARWPSTESLAKVMDATGASFEEFSKLMSGKSSLHPSDFLEQPRSIPLLGMAEAGAGGFFDDAGFPAGQGWDVVEFPAAPEDAVYALEVSGDSMLPLYRDGDTLIVSPNASVRRGDRVVVKTKEGEVMAKILQRQTPRNIELLSVNPEHPNRTFESHQIEWIARVVWASQ 216
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Match: A0A1N6Q4K4_9HYPH (Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains n=14 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1N6Q4K4_9HYPH) HSP 1 Score: 276 bits (707), Expect = 7.540e-92 Identity = 131/211 (62.09%), Postives = 168/211 (79.62%), Query Frame = 1
Query: 1 MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWPTTESIANLLEAAGATVEEFSDLLSGRKGQPPKRKQIPLLGLARAGKGGFFDDSGFPSGNGWDEIDVPGVTDNTAYALEITGDSMLPVYREGDTIIVSPSATVRKGDRVVVKTTDGQVMAKVMQRQTAKNVELASFNKDHDTRTLDMKDVDWMARIIWASQ 633
M SH Q+W AIDT+A+RYGF+ASGLA+K+GLD T+FN SKR PDGR RWP+TESIA +L A GA+++EF ++ R+ P + IPL+G A+AG GGFFDD GFP G GW+E+ PG D AYALE++GDSMLP+YR+GDTIIVSP+A VR+GDRVVVKT DG+V+AK ++RQTAK +ELAS N +H R L++ D+ +MAR+IWASQ
Sbjct: 1 MLSHDQIWGAIDTLAQRYGFTASGLARKAGLDATTFNRSKRVAPDGRERWPSTESIAKILAATGASLDEFMSVVLRRETAPART--IPLIGFAQAGSGGFFDDGGFPVGTGWEEVAFPGTADEKAYALEVSGDSMLPLYRDGDTIIVSPTAAVRRGDRVVVKTNDGEVLAKQLKRQTAKTIELASLNPEHADRVLNLADIAFMARVIWASQ 209 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16878.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16878.1.1 >prot_P-wetherbeei_contig16878.1.1 ID=prot_P-wetherbeei_contig16878.1.1|Name=mRNA_P-wetherbeei_contig16878.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp MFSHKQVWAAIDTIAERYGFSASGLAKKSGLDPTSFNPSKRNGPDGRPRWback to top mRNA from alignment at P-wetherbeei_contig16878:14..649+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16878.1.1 ID=mRNA_P-wetherbeei_contig16878.1.1|Name=mRNA_P-wetherbeei_contig16878.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig16878:14..649+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16878:14..649+ >mRNA_P-wetherbeei_contig16878.1.1 ID=mRNA_P-wetherbeei_contig16878.1.1|Name=mRNA_P-wetherbeei_contig16878.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig16878:14..649+ (Phaeothamnion wetherbeei SAG_119_79)back to top |