mRNA_P-wetherbeei_contig1687.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1687.4.1
Unique NamemRNA_P-wetherbeei_contig1687.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A0A3C0TV19_9PROT (Heat shock protein HspQ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TV19_9PROT)

HSP 1 Score: 206 bits (523), Expect = 6.690e-67
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:   16 RSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYELLKRHAH 333
            R AKFRIGQLV+HR+FPFRGVIFDVDPEFNN+EQWYQSIPAEIRPR+DQPFYHLLAENEET+YEAYVSEQNLLPDESGEP+GHPQV  LFG+L DN YELLKRHAH
Sbjct:   11 REAKFRIGQLVRHRIFPFRGVIFDVDPEFNNSEQWYQSIPAEIRPRKDQPFYHLLAENEETHYEAYVSEQNLLPDESGEPIGHPQVNALFGKLHDNKYELLKRHAH 116
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A0A353LQ28_9PROT (Heat shock protein HspQ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LQ28_9PROT)

HSP 1 Score: 177 bits (450), Expect = 7.030e-56
Identity = 81/108 (75.00%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:   10 MARSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYELLKRHAH 333
            M + AKF IGQ+V+HR+FPFRGVIFDVDPEFNNTE+WYQSIPAE+RPR+DQPFYHL AENEETYYEAYVSEQNLL DE+GEPV HPQV+K+F       Y L K +AH
Sbjct:    1 MTQRAKFSIGQVVRHRVFPFRGVIFDVDPEFNNTEEWYQSIPAEVRPRKDQPFYHLFAENEETYYEAYVSEQNLLNDETGEPVDHPQVSKVFSDHSGGVYRLRKHYAH 108
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: UPI001423B8A3 (heat shock protein HspQ n=1 Tax=Parvibaculum indicum TaxID=562969 RepID=UPI001423B8A3)

HSP 1 Score: 171 bits (434), Expect = 2.060e-53
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:   16 RSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYELLKRHAH 333
            R AKFRIGQ+V+HR +PFRGVIFDVDP FNNTE+W+QSIP E+RPR+DQP+YHLLAEN ET Y AYVSEQNLLPDESGEPV HPQVA+ FG L D  Y+L + ++H
Sbjct:    5 RQAKFRIGQVVRHRFYPFRGVIFDVDPTFNNTEEWWQSIPEEVRPRKDQPYYHLLAENGETEYVAYVSEQNLLPDESGEPVRHPQVAEFFGPLEDGVYKLREDNSH 110
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A0A3B8XID8_9HYPH (Heat shock protein HspQ n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3B8XID8_9HYPH)

HSP 1 Score: 170 bits (430), Expect = 8.380e-53
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:   16 RSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYELLKRHAH 333
            R+AKFRIGQ+V+HR +PFRGVIFDVDP FNNTE W+ SIP E+RPR+DQP+YHLLAEN ET Y AYVSEQNLLPDESGEPV HPQVA+LFG L++  Y L  + AH
Sbjct:    5 RAAKFRIGQVVRHRFYPFRGVIFDVDPTFNNTEDWWLSIPEEVRPRKDQPYYHLLAENSETEYVAYVSEQNLLPDESGEPVRHPQVAELFGPLKNGLYALRTKSAH 110
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: UPI00156D62C0 (heat shock protein HspQ n=1 Tax=Chelativorans sp. Marseille-P2723 TaxID=2709133 RepID=UPI00156D62C0)

HSP 1 Score: 169 bits (427), Expect = 2.400e-52
Identity = 76/106 (71.70%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:   16 RSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYELLKRHAH 333
            R AKF IGQ+V+HRLFPFRGV+FDVDPEFNNTE+WYQ+IPAEIRP +DQPFYHLLAENEET Y AYVSEQNLL DESGEPV HPQ+++ F ++ +  Y   ++H H
Sbjct:    5 RKAKFAIGQVVRHRLFPFRGVVFDVDPEFNNTEEWYQAIPAEIRPSKDQPFYHLLAENEETQYVAYVSEQNLLEDESGEPVSHPQLSEFFVRMANGKYMPHQKHTH 110
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A0A3B9A9T5_9GAMM (Heat shock protein HspQ n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A3B9A9T5_9GAMM)

HSP 1 Score: 168 bits (426), Expect = 3.630e-52
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:   16 RSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSY--ELLKRH 327
            R+AKF IG +VKHRL+PFRGVIFDVDP FNNTE+W+QSIP  +RP++DQPFYHLLAENEETYY AYVSEQNLLPD+SG+PVGHPQV +LFG+  +  Y  + +K H
Sbjct:    7 RTAKFEIGHVVKHRLYPFRGVIFDVDPTFNNTEEWWQSIPEHLRPKKDQPFYHLLAENEETYYVAYVSEQNLLPDDSGKPVGHPQVKELFGEFENTHYRPKAIKSH 112
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A0A562C9B1_9HYPH (Heat shock protein HspQ n=2 Tax=Mesorhizobium sp. J18 TaxID=935263 RepID=A0A562C9B1_9HYPH)

HSP 1 Score: 169 bits (427), Expect = 4.520e-52
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:    1 HNVMARSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYELLKRHAH 333
            HNV  ++AKF+IGQ+V+HRLFPFRGVI+DVDPEFNNTE+WYQ+IPAE+RPR+DQPFYHLLAENEET Y AYVSEQNLL DESGEPV HPQ+ +LF Q  D  Y    R  H
Sbjct:   22 HNV--KTAKFQIGQVVRHRLFPFRGVIYDVDPEFNNTEEWYQAIPAEVRPRKDQPFYHLLAENEETEYIAYVSEQNLLEDESGEPVRHPQLFELFVQTPDGRYAPRHRPHH 130
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A7HXS0_PARL1 (Hemimethylated DNA binding protein n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HXS0_PARL1)

HSP 1 Score: 167 bits (424), Expect = 6.890e-52
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:   16 RSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYELLKRHAH 333
            R AKFRIGQ+V+HR +PFRGVIFDVDP FNNTE+W+ SIP E+RPR+DQP+YHLLAEN +T Y AYVSEQNLLPDE+GEPV HPQV +LFG L+D  Y +  + AH
Sbjct:    5 RDAKFRIGQIVRHRFYPFRGVIFDVDPTFNNTEEWWLSIPEEVRPRKDQPYYHLLAENSDTEYVAYVSEQNLLPDETGEPVRHPQVHELFGALKDGIYSIRAKSAH 110
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A0A1H3XGZ5_9RHOB (Heat shock protein HspQ n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H3XGZ5_9RHOB)

HSP 1 Score: 167 bits (422), Expect = 1.310e-51
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 1 
Query:   10 MARSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSYEL 315
            M  +AKFRIGQ+V+HR++PFRGVIFDVDPEF NTE+W+++IP ++RPRRDQPFYHL AENE +YY AYVSEQNL+PDE+GEPV HP+V  +FG LRD +YEL
Sbjct:    1 MGVTAKFRIGQVVRHRVYPFRGVIFDVDPEFANTEEWWEAIPEDVRPRRDQPFYHLYAENETSYYVAYVSEQNLVPDETGEPVDHPEVEDMFGDLRDGAYEL 102
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BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Match: A0A523F4C8_9PROT (Heat shock protein HspQ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523F4C8_9PROT)

HSP 1 Score: 166 bits (421), Expect = 1.910e-51
Identity = 73/101 (72.28%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    7 VMARSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRDQPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSY 309
            VM R+AKF++GQ+V+HR++PFRGV+FDVDPEF+NTE+WY++IP +IRP +DQP+YHLLAENEET Y AYVSEQNLLPD+SGEPV HPQVA  FG L+D+ Y
Sbjct:    2 VMIRNAKFQVGQIVQHRVYPFRGVVFDVDPEFDNTEEWYEAIPEKIRPHKDQPYYHLLAENEETEYIAYVSEQNLLPDDSGEPVRHPQVADFFGPLKDSIY 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1687.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TV19_9PROT6.690e-6788.68Heat shock protein HspQ n=1 Tax=Alphaproteobacteri... [more]
A0A353LQ28_9PROT7.030e-5675.00Heat shock protein HspQ n=1 Tax=Alphaproteobacteri... [more]
UPI001423B8A32.060e-5373.58heat shock protein HspQ n=1 Tax=Parvibaculum indic... [more]
A0A3B8XID8_9HYPH8.380e-5373.58Heat shock protein HspQ n=1 Tax=Rhodobiaceae bacte... [more]
UPI00156D62C02.400e-5271.70heat shock protein HspQ n=1 Tax=Chelativorans sp. ... [more]
A0A3B9A9T5_9GAMM3.630e-5271.70Heat shock protein HspQ n=1 Tax=Porticoccaceae bac... [more]
A0A562C9B1_9HYPH4.520e-5272.97Heat shock protein HspQ n=2 Tax=Mesorhizobium sp. ... [more]
A7HXS0_PARL16.890e-5270.75Hemimethylated DNA binding protein n=7 Tax=Alphapr... [more]
A0A1H3XGZ5_9RHOB1.310e-5171.57Heat shock protein HspQ n=1 Tax=Rubrimonas clifton... [more]
A0A523F4C8_9PROT1.910e-5172.28Heat shock protein HspQ n=1 Tax=Alphaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1687contigP-wetherbeei_contig1687:2880..3215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1382303.JPOM01000001_gene868
PFAMsYccV-like
Model size336
Max annot lvl204458|Caulobacterales
KEGG koko:K11940
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.18e-53
EggNOG OGsCOG3785@1|root,COG3785@2|Bacteria,1RHM7@1224|Proteobacteria,2U9MS@28211|Alphaproteobacteria,2KGVA@204458|Caulobacterales
DescriptionDNA-binding protein
Cds size327
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.3991697-CDS-P-wetherbeei_contig1687:2879..32061683186100.3991697-CDS-P-wetherbeei_contig1687:2879..3206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1687 2880..3206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.4122775-UTR-P-wetherbeei_contig1687:3206..32151683186100.4122775-UTR-P-wetherbeei_contig1687:3206..3215Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1687 3207..3215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1687.4.1prot_P-wetherbeei_contig1687.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1687 2880..3206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1687.4.1

>prot_P-wetherbeei_contig1687.4.1 ID=prot_P-wetherbeei_contig1687.4.1|Name=mRNA_P-wetherbeei_contig1687.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MARSAKFRIGQLVKHRLFPFRGVIFDVDPEFNNTEQWYQSIPAEIRPRRD
QPFYHLLAENEETYYEAYVSEQNLLPDESGEPVGHPQVAKLFGQLRDNSY
ELLKRHAH*
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mRNA from alignment at P-wetherbeei_contig1687:2880..3215-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1687.4.1 ID=mRNA_P-wetherbeei_contig1687.4.1|Name=mRNA_P-wetherbeei_contig1687.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig1687:2880..3215- (Phaeothamnion wetherbeei SAG_119_79)
CATAATGTTATGGCGCGTTCCGCGAAATTCCGCATTGGGCAGCTGGTAAA
GCACCGGCTTTTCCCGTTCCGGGGGGTCATTTTTGACGTTGATCCCGAAT
TCAATAATACCGAGCAATGGTATCAGTCCATCCCGGCCGAAATCCGGCCC
CGCAGGGACCAGCCTTTTTATCATCTGCTGGCGGAAAACGAAGAAACCTA
TTACGAGGCGTATGTGTCGGAACAGAACCTGCTGCCAGATGAATCGGGCG
AGCCGGTCGGACATCCGCAAGTCGCCAAACTTTTCGGTCAGCTGCGCGAT
AACAGCTATGAGCTGCTGAAGCGCCACGCGCATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1687:2880..3215-

>mRNA_P-wetherbeei_contig1687.4.1 ID=mRNA_P-wetherbeei_contig1687.4.1|Name=mRNA_P-wetherbeei_contig1687.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig1687:2880..3215- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGTTCCGCGAAATTCCGCATTGGGCAGCTGGTAAAGCACCGGCT
TTTCCCGTTCCGGGGGGTCATTTTTGACGTTGATCCCGAATTCAATAATA
CCGAGCAATGGTATCAGTCCATCCCGGCCGAAATCCGGCCCCGCAGGGAC
CAGCCTTTTTATCATCTGCTGGCGGAAAACGAAGAAACCTATTACGAGGC
GTATGTGTCGGAACAGAACCTGCTGCCAGATGAATCGGGCGAGCCGGTCG
GACATCCGCAAGTCGCCAAACTTTTCGGTCAGCTGCGCGATAACAGCTAT
GAGCTGCTGAAGCGCCACGCGCATTAA
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