mRNA_P-wetherbeei_contig16864.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16864.2.1
Unique NamemRNA_P-wetherbeei_contig16864.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A7Z9PRN7_9BACT (RNA polymerase sigma factor n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PRN7_9BACT)

HSP 1 Score: 214 bits (545), Expect = 4.960e-68
Identity = 108/178 (60.67%), Postives = 131/178 (73.60%), Query Frame = 1
Query:   25 DFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHD--PEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVKEQ 552
            +FQDEA+ H+DALYRYA RLT N+RDAEDLLQ+TFLRA RFW  YQKG+NCKAWL+RIM+NL +NR   + RAP   SLDDTEEWYLY  L D  PE S    P K+F   +W   I  A+  LP+E+R  ++L D E  SYQEI+E+L++PIGTVRSRLNRAR KLQ+ L   + EQ
Sbjct:    4 EFQDEAMPHLDALYRYALRLTRNERDAEDLLQDTFLRAYRFWDKYQKGSNCKAWLYRIMKNLFLNRVDKSNRAPDQTSLDDTEEWYLYGQLKDGGPE-SVRNDPAKIFEIRDWGEHIQEAINNLPDEFREPLVLFDGEGLSYQEISELLEVPIGTVRSRLNRARKKLQKDLAPIMLEQ 180          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A2M6YWP9_9BACT (RNA polymerase sigma factor n=1 Tax=Ignavibacteriales bacterium CG07_land_8_20_14_0_80_59_12 TaxID=1974045 RepID=A0A2M6YWP9_9BACT)

HSP 1 Score: 173 bits (438), Expect = 1.330e-51
Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 1
Query:   13 ELDQDFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVK 546
            E  ++F  EAL HMD LY +A R+TGN  DA+DLLQET+L+A RFW  ++KGTNC+AWLFRIM+N  INR +   R P     DD EE+Y  N + D E +E    E+  F +    ++ +AL+ LP ++R+ +ILCD+E F+Y+EI+E +  PIGTVRSRL+R R  L+  L +Y +
Sbjct:   17 EKQREFSAEALPHMDVLYNFALRMTGNPDDADDLLQETYLKAFRFWDKFEKGTNCRAWLFRIMKNSYINRYRKESREPDTVDYDDVEEFY--NSIRD-ETAETTDMEERLFGNLLDDDVAKALESLPVDFRTVLILCDIERFTYEEISEFVNCPIGTVRSRLHRGRKMLRAKLWKYAR 191          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A367Z8P1_9BACT (RNA polymerase sigma factor n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A367Z8P1_9BACT)

HSP 1 Score: 172 bits (437), Expect = 1.520e-51
Identity = 86/175 (49.14%), Postives = 122/175 (69.71%), Query Frame = 1
Query:   22 QDFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVK 546
            ++F DEA+ +M+ LY +AR LTGN  DA+DLLQ+TFL+A RFW +Y+KGTN +AWLFRIM+N  IN+ +   + P+    D+ EE++  +     E + E    K  F + +  E+ RA+ +LP ++++ IILCD+E F+Y+EIAE L IPIGTVRSRL+RAR  LQ  L+EY K
Sbjct:   15 KEFLDEAIPNMNLLYNFARHLTGNADDADDLLQDTFLKAYRFWDSYEKGTNIRAWLFRIMKNSYINKYRKDSKEPEVVDFDEIEEFFTSSQT---EIATEDDLAKKIFSNLFEDEVQRAIDELPIDFKTVIILCDIEGFTYEEIAEFLDIPIGTVRSRLHRARKMLQSKLVEYAK 186          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A3D0QJD2_9BACT (RNA polymerase subunit sigma n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D0QJD2_9BACT)

HSP 1 Score: 172 bits (437), Expect = 1.780e-51
Identity = 86/176 (48.86%), Postives = 120/176 (68.18%), Query Frame = 1
Query:   25 DFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVKEQ 552
            +F+ EAL HMD LY +A R TGN+ DA DLLQETFL+A RFW  Y+KGTN +AWLFRIM+N  INR +   + P     +D E +Y   ++   E ++    ++  + +    E+T+ALQ LP+++R+ +ILCD+E  +Y+EIAE ++ PIGTVRSRL+R R  LQE L EY K+Q
Sbjct:   19 EFEVEALPHMDVLYNFALRTTGNEDDARDLLQETFLKAYRFWDKYEKGTNIRAWLFRIMKNSYINRYRKETKEPDKVDYEDIENFY---NVIRAESTDPNDLQEQLYGNLLGDEVTKALQSLPDDFRTVVILCDIEGLTYEEIAEFVECPIGTVRSRLHRGRKLLQEKLYEYAKQQ 191          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A1F8WYL5_9DELT (RNA polymerase subunit sigma n=1 Tax=Deltaproteobacteria bacterium GWA2_54_12 TaxID=1797808 RepID=A0A1F8WYL5_9DELT)

HSP 1 Score: 170 bits (430), Expect = 2.040e-50
Identity = 89/176 (50.57%), Postives = 116/176 (65.91%), Query Frame = 1
Query:   25 DFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVKEQ 552
            DF+ EAL HMD LY YA R TGN+ DA DLLQETFL+A RFW  Y+KGTN +AWLFRIM+N  INR +   + P      D E +Y  N +           EKLF  +    E+ +AL++LPE++R+ +ILCD+E  +Y+EI+E ++ PIGTVRSRL+R R  LQ  L EY K+Q
Sbjct:   19 DFEQEALPHMDILYNYALRTTGNEDDARDLLQETFLKAYRFWDKYEKGTNIRAWLFRIMKNSYINRYRKETKEPDKVDYGDIENFY--NTIRADYADTNDLQEKLFG-NLLGDEVAKALEELPEDFRTVVILCDIEGMTYEEISEFIERPIGTVRSRLHRGRKLLQAKLFEYAKKQ 191          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A7V1TSZ4_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V1TSZ4_9BACT)

HSP 1 Score: 169 bits (428), Expect = 4.090e-50
Identity = 86/181 (47.51%), Postives = 121/181 (66.85%), Query Frame = 1
Query:    7 PSELDQDFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVKE 549
            P+   ++F+ +AL HMD LY YA RLTG+  DA DLLQET+L+A RFW  +++GTN +AWLFRIM+N  IN  +   + P     D+ E +Y  N + D E S++   ++  F      ++T+AL+ LPEE+R+ +ILCD+E  +Y+EIAE LQIP+GTVRSRL+R R  L   L +Y KE
Sbjct:   11 PNPRHKEFEQQALPHMDILYNYALRLTGSADDAHDLLQETYLKAYRFWDKFEQGTNLRAWLFRIMKNTYINIYRKEVKEPDTVDYDEIESYY--NIIRD-ESSDDSDLQQKLFGQLLDDDVTKALETLPEEFRTVVILCDIEGLTYEEIAEFLQIPVGTVRSRLHRGRKLLYTRLYDYAKE 188          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A1G0SFE5_9BACT (RNA polymerase subunit sigma n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1G0SFE5_9BACT)

HSP 1 Score: 169 bits (428), Expect = 5.220e-50
Identity = 87/176 (49.43%), Postives = 117/176 (66.48%), Query Frame = 1
Query:   22 QDFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVKE 549
            Q+F+ EAL HMD LY +A R TGN+ DA DLLQET+L+A RFW  Y+KGTN +AWLFRIM+N  INR +   R P     ++ E +Y  + + D E  +    +   F      E+T ALQ+LP+++R+ +ILCD+E  +Y+EIAE L  PIGTVRSRL+R R  LQ+ L EY +E
Sbjct:   18 QEFESEALPHMDLLYSFALRTTGNEDDARDLLQETYLKAYRFWDKYEKGTNIRAWLFRIMKNSYINRYRKETREPDTVDYENVENFY--DSIRD-ESRDSTDLQHRMFGGLLGDEVTSALQELPDDFRTVVILCDIEGLTYEEIAEFLDCPIGTVRSRLHRGRKMLQKQLFEYARE 190          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A7V0VCD7_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V0VCD7_9BACT)

HSP 1 Score: 168 bits (425), Expect = 1.310e-49
Identity = 85/177 (48.02%), Postives = 122/177 (68.93%), Query Frame = 1
Query:   16 LDQDFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVK 546
            LD++F+ EAL HMDALY +A +LT N  DA DLLQET+++A RFW  ++KGTNCKAWLFRIM+N  IN  +   ++P+    D+ EE  +Y  +   EQ+      +++ E+ +  EI  A++ LPEE+R+ +++CDVE  SY+EIA+ + IPIGTVRSR++RAR  L   L +Y K
Sbjct:   16 LDEEFRKEALPHMDALYNFALQLTQNSDDAADLLQETYIKAYRFWDKFEKGTNCKAWLFRIMKNSFINFYRKNIKSPEKLDYDEIEE--IYETIKSNEQNPHNLDREIY-ENVFDDEIMTAIKSLPEEFRTVLLMCDVEGMSYEEIADFMDIPIGTVRSRIHRARKLLAVKLYDYAK 189          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: A0A2E0UMJ2_9GAMM (RNA polymerase subunit sigma n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A2E0UMJ2_9GAMM)

HSP 1 Score: 168 bits (425), Expect = 1.780e-49
Identity = 83/174 (47.70%), Postives = 117/174 (67.24%), Query Frame = 1
Query:   25 DFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVK 546
            DF+ EAL HMDALY +A R+T +  DA DLLQET+L+A RF+  +++GTNCKAWLFRIM+N  IN  +   + P     DD EE+Y   H    E ++    E+  F +    +++ AL+ LPE++R+ +ILCD+E F+Y+EIAE ++ PIGTVRSRL+R R  L+  L +Y K
Sbjct:   28 DFEREALPHMDALYNFALRMTSDPDDANDLLQETYLKAYRFFDKFERGTNCKAWLFRIMKNSFINIYRRVSKEPDKVDYDDVEEFY---HSIRAESTDPNDLEERLFSNLLDDDVSHALEDLPEDFRTVVILCDIEGFTYEEIAEFVECPIGTVRSRLHRGRKMLRAKLFDYAK 198          
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Match: UPI0019B82619 (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Bacteria TaxID=2 RepID=UPI0019B82619)

HSP 1 Score: 168 bits (425), Expect = 2.010e-49
Identity = 92/177 (51.98%), Postives = 121/177 (68.36%), Query Frame = 1
Query:   25 DFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFWHNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLHDPEQSEEGS--PEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQEIAEILQIPIGTVRSRLNRARGKLQELLLEYVKE 549
            DF+ E +VH+D+LYR A  +T +  DAEDL+Q+TF+RA +F+  YQ GTN +AWLFRIM NL IN  +   R P+  S DD E++YLYN L D  QS  GS  PE        +  I  A+ KLP+EYR  +IL D++EFSYQEI+E+LQIPIGTVRSRL+R R  +Q+ +  Y +E
Sbjct:   37 DFEREMVVHLDSLYRAALGMTRDKGDAEDLVQDTFVRAFQFYAQYQGGTNGRAWLFRIMTNLYINGYRKKHREPERVSYDDLEDFYLYNRLSDA-QSRGGSNAPETEVVLRVEAEAIREAVDKLPDEYRDTVILADLQEFSYQEISEMLQIPIGTVRSRLSRGRRLVQKAIWAYTEE 212          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16864.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9PRN7_9BACT4.960e-6860.67RNA polymerase sigma factor n=1 Tax=Phycisphaerale... [more]
A0A2M6YWP9_9BACT1.330e-5148.31RNA polymerase sigma factor n=1 Tax=Ignavibacteria... [more]
A0A367Z8P1_9BACT1.520e-5149.14RNA polymerase sigma factor n=1 Tax=Ignavibacteria... [more]
A0A3D0QJD2_9BACT1.780e-5148.86RNA polymerase subunit sigma n=1 Tax=Bacteroidetes... [more]
A0A1F8WYL5_9DELT2.040e-5050.57RNA polymerase subunit sigma n=1 Tax=Deltaproteoba... [more]
A0A7V1TSZ4_9BACT4.090e-5047.51Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A1G0SFE5_9BACT5.220e-5049.43RNA polymerase subunit sigma n=2 Tax=Bacteroidetes... [more]
A0A7V0VCD7_9BACT1.310e-4948.02Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2E0UMJ2_9GAMM1.780e-4947.70RNA polymerase subunit sigma n=1 Tax=Ectothiorhodo... [more]
UPI0019B826192.010e-4951.98Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16864contigP-wetherbeei_contig16864:614..1165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog517418.Ctha_1263
PFAMsSigma70_r2,Sigma70_r4_2
Model size552
Max annot lvl1090|Chlorobi
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.04e-49
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,1FDU7@1090|Chlorobi
DescriptionBelongs to the sigma-70 factor family. ECF subfamily
Cds size552
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.2341075-CDS-P-wetherbeei_contig16864:613..11651683186100.2341075-CDS-P-wetherbeei_contig16864:613..1165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16864 614..1165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16864.2.1prot_P-wetherbeei_contig16864.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16864 614..1165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16864.2.1

>prot_P-wetherbeei_contig16864.2.1 ID=prot_P-wetherbeei_contig16864.2.1|Name=mRNA_P-wetherbeei_contig16864.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MAPSELDQDFQDEALVHMDALYRYARRLTGNDRDAEDLLQETFLRAVRFW
HNYQKGTNCKAWLFRIMRNLSINRAQAAGRAPQGASLDDTEEWYLYNHLH
DPEQSEEGSPEKLFFEHNWSPEITRALQKLPEEYRSAIILCDVEEFSYQE
IAEILQIPIGTVRSRLNRARGKLQELLLEYVKEQ
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mRNA from alignment at P-wetherbeei_contig16864:614..1165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16864.2.1 ID=mRNA_P-wetherbeei_contig16864.2.1|Name=mRNA_P-wetherbeei_contig16864.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig16864:614..1165- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCCTCCGAATTGGATCAAGATTTCCAAGATGAGGCACTCGTCCA CATGGACGCCCTCTATCGCTATGCCCGTCGCTTGACCGGAAACGACCGCG ACGCCGAAGATCTGCTTCAGGAAACTTTCTTGCGTGCCGTCCGCTTCTGG CACAACTACCAGAAGGGCACCAACTGCAAGGCCTGGCTCTTCCGCATCAT GCGCAACCTGAGCATCAATCGCGCCCAGGCGGCTGGCAGAGCCCCGCAGG GAGCGTCTCTCGACGATACTGAGGAATGGTATCTCTATAACCATCTTCAC GACCCGGAACAGAGCGAAGAGGGGAGTCCCGAAAAGCTCTTCTTCGAGCA CAACTGGTCGCCGGAGATTACCCGCGCCCTGCAGAAACTGCCGGAAGAAT ACCGTTCGGCGATTATATTGTGCGACGTGGAAGAATTCAGCTACCAGGAA ATTGCCGAAATTCTCCAGATTCCCATCGGAACGGTGCGTTCGCGACTTAA CCGAGCTCGCGGCAAGCTTCAGGAACTGCTGCTGGAGTATGTCAAAGAGC AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16864:614..1165-

>mRNA_P-wetherbeei_contig16864.2.1 ID=mRNA_P-wetherbeei_contig16864.2.1|Name=mRNA_P-wetherbeei_contig16864.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig16864:614..1165- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCCTCCGAATTGGATCAAGATTTCCAAGATGAGGCACTCGTCCA
CATGGACGCCCTCTATCGCTATGCCCGTCGCTTGACCGGAAACGACCGCG
ACGCCGAAGATCTGCTTCAGGAAACTTTCTTGCGTGCCGTCCGCTTCTGG
CACAACTACCAGAAGGGCACCAACTGCAAGGCCTGGCTCTTCCGCATCAT
GCGCAACCTGAGCATCAATCGCGCCCAGGCGGCTGGCAGAGCCCCGCAGG
GAGCGTCTCTCGACGATACTGAGGAATGGTATCTCTATAACCATCTTCAC
GACCCGGAACAGAGCGAAGAGGGGAGTCCCGAAAAGCTCTTCTTCGAGCA
CAACTGGTCGCCGGAGATTACCCGCGCCCTGCAGAAACTGCCGGAAGAAT
ACCGTTCGGCGATTATATTGTGCGACGTGGAAGAATTCAGCTACCAGGAA
ATTGCCGAAATTCTCCAGATTCCCATCGGAACGGTGCGTTCGCGACTTAA
CCGAGCTCGCGGCAAGCTTCAGGAACTGCTGCTGGAGTATGTCAAAGAGC
AG
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