mRNA_P-wetherbeei_contig16861.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A521WCG5_9CHLR (Tripartite tricarboxylate transporter substrate binding protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521WCG5_9CHLR) HSP 1 Score: 183 bits (465), Expect = 9.120e-58 Identity = 89/119 (74.79%), Postives = 101/119 (84.87%), Query Frame = 1
Query: 1 AGALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
AG +A++ LA AQ YPDKPIRVIVPVPAGGTPDVVARMV PGLS+LLGQQLV+DNRGGAG LIG E+A RA+PDGYTL FSSPG L ILP+L K ++YD LRDF P+SLV +GPFLL
Sbjct: 10 AGLAVALMPVLAVAQAYPDKPIRVIVPVPAGGTPDVVARMVAPGLSSLLGQQLVIDNRGGAGALIGTELAVRAVPDGYTLLFSSPGGLTILPHLHKKISYDPLRDFAPVSLVCIGPFLL 128
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4ABS1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4ABS1_9PROT) HSP 1 Score: 163 bits (413), Expect = 2.100e-47 Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1
Query: 10 LLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
+LA L+ LA AQ YPDKPIRVI+PVPAGGTPDV+AR VTPG++ +LGQ LV+DNRGGAGG I AE+ ARA PDGYT+F +SPG+L I+P++ K+V YDT +DF PI L+S G FLL
Sbjct: 12 VLATLAPLAAAQAYPDKPIRVILPVPAGGTPDVLARHVTPGMAEMLGQSLVIDNRGGAGGRIAAELVARAAPDGYTIFLTSPGALTIVPHVSKNVPYDTHKDFAPIGLISKGAFLL 127
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: UPI0019B708E9 (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019B708E9) HSP 1 Score: 163 bits (413), Expect = 2.260e-47 Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1
Query: 10 LLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
++ L LA AQ++PD+P+RVIVPVPAGGTPDV+AR+VT + LLGQ +V+DNRGGAGG+IGAE+AA+AIPDGYTLF SSPG +VILP+LQK YD + DF PI L+S GPFLL
Sbjct: 15 IVLALPGLAPAQSWPDRPVRVIVPVPAGGTPDVIARLVTAPMGALLGQTMVIDNRGGAGGMIGAEVAAKAIPDGYTLFLSSPGPMVILPHLQKKTGYDPIVDFAPIGLISSGPFLL 130
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A3N5WVI0_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WVI0_9PROT) HSP 1 Score: 160 bits (406), Expect = 3.160e-46 Identity = 81/117 (69.23%), Postives = 94/117 (80.34%), Query Frame = 1
Query: 7 ALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
AL + +A AQ +PDKPIRVI+ VPAG TPDV AR+V PGLS LGQ LV DNR GAGGLIGAE+AA A PDGYTLF SSPG+L ILP+L++ V YDTLRDF PISL+S+GPF+L
Sbjct: 23 ALTLLAPPVAAAQAWPDKPIRVILSVPAGATPDVTARLVFPGLSQQLGQPLVADNRPGAGGLIGAEIAANATPDGYTLFISSPGALTILPHLRQKVPYDTLRDFAPISLISIGPFVL 139
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4A7D5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A7D5_9PROT) HSP 1 Score: 159 bits (401), Expect = 1.420e-45 Identity = 75/118 (63.56%), Postives = 94/118 (79.66%), Query Frame = 1
Query: 4 GALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
GA++A LA AQ YP KP+RVI+ PAGGTPDVVARMV PGLS+ LGQQ ++DNRGGAGGLI E+ A+A PDGYTLF PGSL I+P+L++++ YDTLRD P+SL+ +GP+LL
Sbjct: 13 GAVVAAAPFLALAQAYPLKPVRVILASPAGGTPDVVARMVAPGLSSRLGQQFIIDNRGGAGGLIATELTAKAHPDGYTLFIGGPGSLTIIPHLRQNMPYDTLRDLAPVSLIVIGPYLL 130
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4D7T8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4D7T8_9PROT) HSP 1 Score: 154 bits (389), Expect = 7.590e-45 Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 1
Query: 1 AGALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPI 327
AG A+L+ LA AQ YP+KPIRVI+ VPAG TPD+ AR++TPGLS LLGQQLVVDNR GAGGLIGAE+A++A PDGYT+F SSPG+L ILP+L+K + YDTLRDF PI
Sbjct: 9 AGLAAALLAPLAAAQDYPNKPIRVILSVPAGATPDLTARLLTPGLSQLLGQQLVVDNRPGAGGLIGAEIASKATPDGYTVFISSPGALTILPHLRKSMPYDTLRDFAPI 117
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A3N5N9J1_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5N9J1_9PROT) HSP 1 Score: 150 bits (380), Expect = 4.370e-42 Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 1
Query: 16 AVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
A+ S A AQ+YP+KP+RVIVPVPAGGTPD+ AR+V P LS LL QQ VVDNR GAG LIGAE+AA+A PDGYTL FSS G L ILP+LQK + Y L+D PISL+S GPF+L
Sbjct: 52 ALHQSFASAQSYPNKPVRVIVPVPAGGTPDITARLVMPELSGLLKQQFVVDNRPGAGSLIGAEIAAKAQPDGYTLLFSSGGPLTILPHLQKKMPYRPLQDLAPISLISSGPFVL 165
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A7X1TVQ8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1TVQ8_9PROT) HSP 1 Score: 143 bits (360), Expect = 9.780e-38 Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query: 40 AQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
AQ YP+KP+RV+V PA TPD+VAR+VTPGLS L GQQ +VDNR GA G++G E+AA+A PDGYTL +P +L I+ Y+ K V YD LRDF+PI L+SVGP+LL
Sbjct: 273 AQDYPNKPVRVLVATPARSTPDMVARLVTPGLSTLFGQQFLVDNRSGANGMLGTELAAKATPDGYTLVMGTPSTLTIMRYVHKDVPYDALRDFSPIGLISVGPYLL 378
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4DLI1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DLI1_9PROT) HSP 1 Score: 138 bits (347), Expect = 1.490e-37 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 7 ALLAVLSSL-AFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
AL VLS L A AQ YP++PIRVIVP PAG D+ R+VTP LS L GQQ VVDNR GAGG IG E+AAR+ DGYTL +PG+L I+ +LQK + Y TLRDF PI L+S GP+LL
Sbjct: 8 ALPVVLSPLLAAAQDYPNRPIRVIVPTPAGSASDMSLRLVTPDLSALFGQQFVVDNRAGAGGRIGTELAARSSADGYTLVLGTPGTLTIMQHLQKDLPYQTLRDFAPIGLISQGPYLL 125
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A3N5NNH1_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NNH1_9PROT) HSP 1 Score: 132 bits (331), Expect = 5.300e-35 Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 22 LSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
LSS A YPDKP+RV+VP AG TPDVVAR V PGL LG + ++DNRGGA GLIG E+AARA PDG+TL + +L ++ +L K V +D L+DF PI LVSV P+L+
Sbjct: 33 LSSALTATEYPDKPVRVLVPTLAGSTPDVVARAVAPGLGVRLGNRFIIDNRGGANGLIGTELAARATPDGHTLLLGTTATLTVMRHLHKEVPFDALKDFVPIGLVSVRPYLV 144 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16861.2.1 >prot_P-wetherbeei_contig16861.2.1 ID=prot_P-wetherbeei_contig16861.2.1|Name=mRNA_P-wetherbeei_contig16861.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp AGALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGback to top mRNA from alignment at P-wetherbeei_contig16861:1064..1420+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16861.2.1 ID=mRNA_P-wetherbeei_contig16861.2.1|Name=mRNA_P-wetherbeei_contig16861.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig16861:1064..1420+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16861:1064..1420+ >mRNA_P-wetherbeei_contig16861.2.1 ID=mRNA_P-wetherbeei_contig16861.2.1|Name=mRNA_P-wetherbeei_contig16861.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig16861:1064..1420+ (Phaeothamnion wetherbeei SAG_119_79)back to top |