mRNA_P-wetherbeei_contig16861.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16861.1.1
Unique NamemRNA_P-wetherbeei_contig16861.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A521WCF3_9CHLR (SDR family oxidoreductase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521WCF3_9CHLR)

HSP 1 Score: 387 bits (994), Expect = 4.880e-134
Identity = 197/255 (77.25%), Postives = 227/255 (89.02%), Query Frame = 1
Query:    7 TTTGGAFVPGTELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRPAPTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            TTT G   PG ELAGKVAL+TGA++NIGRATAL+LAAGGAA+A+NTRAS+  A KV +EIRAAGGQ E+++ADI+    VK M + ILK+FGRIDILVLNASVR+E+ FLELSY+EWR PL IT DGAF+CAQAC+PSM+++GGGAI+TLGGMQSL+G+K R++GSVAKHGLVG TR +AREFGDR IRANCIAPGTMNTTR PGRAPRPAPTNIPLGRYGEAEEIAS VRFLAGP AS+LTGQ+IQVNGGQMMF
Sbjct:    2 TTTAGVSGPGNELAGKVALITGASRNIGRATALALAAGGAAIAVNTRASREAAGKVVEEIRAAGGQTELFMADIADGSAVKAMAEGILKRFGRIDILVLNASVRTERPFLELSYEEWRQPLAITHDGAFFCAQACLPSMLEHGGGAIITLGGMQSLAGSKHRVHGSVAKHGLVGMTRALAREFGDRGIRANCIAPGTMNTTRGPGRAPRPAPTNIPLGRYGEAEEIASVVRFLAGPGASYLTGQTIQVNGGQMMF 256          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A0S8BRE0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8BRE0_9PROT)

HSP 1 Score: 347 bits (890), Expect = 3.060e-118
Identity = 181/245 (73.88%), Postives = 209/245 (85.31%), Query Frame = 1
Query:   40 ELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRP-APTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            ELAGKVAL+TGA++NIGRATAL+LA  GAAVA+NTR+S+ DAEKV +EI AAGGQAE+YVADI+     K M +AI K+FGR+DILVLNASVRSEK F EL+Y+EWRLPL ITLDGAFY AQACIP M+  GGG+IVTLGG  +LSGAK R++GSVAKHGLVG TR +AREFGDR IRANC+APGTMNTTRA GRAPRP A   +PLGR GEAEE+A+ VRFL GP ASF++GQ+I VNGGQMMF
Sbjct:   10 ELAGKVALITGASRNIGRATALALADAGAAVAVNTRSSRQDAEKVVEEIGAAGGQAELYVADIADEKAAKAMVEAIAKRFGRVDILVLNASVRSEKPFTELTYEEWRLPLSITLDGAFYLAQACIPHMLAAGGGSIVTLGGQVALSGAKNRVHGSVAKHGLVGMTRALAREFGDRGIRANCVAPGTMNTTRAAGRAPRPDAAKVVPLGRLGEAEEVATTVRFLCGPGASFISGQTIHVNGGQMMF 254          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A7C3JR16_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JR16_9PROT)

HSP 1 Score: 344 bits (883), Expect = 2.980e-117
Identity = 177/245 (72.24%), Postives = 209/245 (85.31%), Query Frame = 1
Query:   40 ELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRP-APTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            ELAGKVALVTGA++NIGRA AL+LAAGGAAVA+N R S+ +AE VAQEIR+AGGQAEV++ADI+ AG VK M + ++K+FGR+DILVLNASVRSEK F ELSY+EWR+PL ITLDGAFYC QAC+PSMIK GGG+IVTLGG  +LSGAK R++GSVAKHGLVG TR +AREFGDR IR NC+APGTMNT RA GR+ RP A + +P GR GE EEIA+ VRFL GP ASF++GQ++ VNGGQ MF
Sbjct:    5 ELAGKVALVTGASRNIGRAIALALAAGGAAVAVNARTSRDEAETVAQEIRSAGGQAEVFMADIADAGAVKAMVEGVIKRFGRVDILVLNASVRSEKPFTELSYEEWRVPLSITLDGAFYCTQACLPSMIKAGGGSIVTLGGQVALSGAKNRVHGSVAKHGLVGMTRALAREFGDRGIRVNCVAPGTMNTARAAGRSARPDAKSAVPAGRAGEPEEIATTVRFLCGPGASFISGQTLHVNGGQTMF 249          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A1F4DLW1_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DLW1_9PROT)

HSP 1 Score: 343 bits (880), Expect = 8.840e-117
Identity = 175/246 (71.14%), Postives = 210/246 (85.37%), Query Frame = 1
Query:   37 TELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRP-APTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            TELAGKVALVTGA++NIGRA AL+LA GGAAVA+N R S+ DAEKVA E+RAAGGQAEV++ADI++A  V  M + ++++FGRIDILVLNASVRSEK F E+SYDEWR+PL ITLDGAF+C +AC+P+MI+ GGG+IVTLGG  +LSGAK+R++GSVAKHGLVG TR +AREFGDR IR NC+APGTMNT RA GR+ RP A + +PLGR G+ EEIAS VRFL GP ASF+ GQ+I VNGGQMMF
Sbjct:    5 TELAGKVALVTGASRNIGRAIALALATGGAAVAVNARTSREDAEKVAHEVRAAGGQAEVFMADIAQASAVNAMVEGVIRRFGRIDILVLNASVRSEKPFTEMSYDEWRIPLAITLDGAFHCTKACLPAMIEAGGGSIVTLGGQMALSGAKRRVHGSVAKHGLVGMTRALAREFGDRGIRVNCVAPGTMNTPRAAGRSARPDAASMVPLGRPGDPEEIASTVRFLCGPGASFINGQTIHVNGGQMMF 250          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A1F4A5U2_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A5U2_9PROT)

HSP 1 Score: 331 bits (849), Expect = 4.580e-112
Identity = 172/245 (70.20%), Postives = 202/245 (82.45%), Query Frame = 1
Query:   40 ELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRP-APTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            ELAGKVALVTGA +NIGRA AL+LA GGAAVA+NTR S+ D +   Q IRAAGGQAEV++ADI+    V+TM D I+K+FGR+D LVLNASVR+E+ FLELSY+EWR PL ITLDGAFY A+ACIP MIK GGG+IVTLGGM SLSGA +R++GSVAKHGLVGFTR +ARE   + IRANC+APGTMNT RA  RA RP     +P+GR GEAEEIA+ VRFL GP AS++TGQ++QVNGGQMMF
Sbjct:    6 ELAGKVALVTGAGRNIGRAIALALAEGGAAVAVNTRKSREDVDGTVQAIRAAGGQAEVFMADIADGAAVRTMVDGIVKRFGRVDFLVLNASVRTERPFLELSYEEWRTPLSITLDGAFYLAKACIPEMIKAGGGSIVTLGGMVSLSGAARRVHGSVAKHGLVGFTRAIARELAPQGIRANCVAPGTMNTVRANARAARPDVSKTVPMGRMGEAEEIATTVRFLCGPGASYITGQTLQVNGGQMMF 250          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A3N5P791_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5P791_9PROT)

HSP 1 Score: 314 bits (804), Expect = 3.910e-105
Identity = 161/257 (62.65%), Postives = 206/257 (80.16%), Query Frame = 1
Query:    1 MATTTGGAFVPGTELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRPAPTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            MAT+TG +  PG ELAGKVALVTG A+NIG AT+ +LA GGAAVA+NTRASK D E++ QEIR+AGGQAE+Y+ADI+ A  VK+M DA++++FG++DILVLNASVR E  FL++S++EWR  +GI+LDG+F+  +AC+PSM+K GGG IV LGG Q+LSGA+ R++GSVAKHG+VG TR +AREF DRN+R NC+APG M+T RA GR     P  IP+GR GE  EIA  VRFL GP AS++TGQ + VNGG +M+
Sbjct:    1 MATSTG-SVGPGNELAGKVALVTGGARNIGAATSAALAQGGAAVAVNTRASKEDGERIVQEIRSAGGQAELYLADIANADAVKSMVDAVIQRFGKVDILVLNASVRKETPFLDISFEEWRGIMGISLDGSFHLVKACLPSMLKAGGGNIVMLGGTQALSGARNRVHGSVAKHGMVGMTRALAREFADRNVRVNCVAPGRMDTQRAAGRTVGGDPKGIPMGRLGEPREIADTVRFLCGPGASYITGQLLYVNGGLVMY 256          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A7C2Y6D6_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2Y6D6_9PROT)

HSP 1 Score: 302 bits (773), Expect = 1.940e-100
Identity = 159/244 (65.16%), Postives = 192/244 (78.69%), Query Frame = 1
Query:   40 ELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRPAPTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            ELAGKVALVTGA++NIGRA AL+LA GGAAVA+N R S+ DAEKVA EIRAAGG+AEV +ADI+ AG V  M  AIL +FGRID LVLNASVR E  F E+S++EWR  L +TLDGAF+C +AC+P+MI  GGG+IVTLGGM +LSGA+ R++GSV KHGL G TR +ARE G+  IR NC+APG MNT RA GR+ RP    +PLGR  E EE+A+ VRFL GP AS ++GQ + V+GGQMMF
Sbjct:   12 ELAGKVALVTGASRNIGRAIALALAQGGAAVAVNARTSRDDAEKVAGEIRAAGGRAEVCMADIADAGAVDAMVRAILDRFGRIDCLVLNASVRRETPFREMSFEEWRSLLAVTLDGAFHCTKACLPAMIDAGGGSIVTLGGMTALSGARGRVHGSVGKHGLYGMTRALARELGEHGIRVNCVAPGQMNTARAAGRSARPDAALVPLGRRVEPEEVAAVVRFLCGPGASMVSGQLVYVDGGQMMF 255          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A7X1TVV3_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1TVV3_9PROT)

HSP 1 Score: 296 bits (758), Expect = 8.970e-97
Identity = 151/256 (58.98%), Postives = 199/256 (77.73%), Query Frame = 1
Query:    4 ATTTGGAFVPGTELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRPAPTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            ATT+ G+  PG ELAGKVALVTG A+NIG AT+L+LA  GAAVA+NTR S+ DA++V  EIR  GGQAEV++ADI+    VK M D ++++FG++DILVLNASVR E  FLE+S +EWR  + I+LDG+F+ AQAC+PSM++ GGG+IVTLGG Q+LSGA +R++GSVAKHG++G TR +AREF ++NIR NC++PG M+TTRA GR  R     IP+ R G+  E+A  VRFL GP AS++TGQ +  NGG +M+
Sbjct:   97 ATTSMGSINPGNELAGKVALVTGGARNIGAATSLALAQAGAAVAVNTRKSREDADRVVAEIRENGGQAEVFMADIADPDAVKRMVDGVIERFGKVDILVLNASVRKETPFLEISAEEWRSIMAISLDGSFHLAQACLPSMLEAGGGSIVTLGGTQALSGASRRVHGSVAKHGMLGLTRALAREFAEQNIRVNCVSPGRMDTTRAAGRTVRGDAKGIPMARLGDPREVADTVRFLCGPGASYITGQLLYANGGLVMY 352          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A1F4BKN5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BKN5_9PROT)

HSP 1 Score: 290 bits (741), Expect = 1.110e-95
Identity = 150/244 (61.48%), Postives = 186/244 (76.23%), Query Frame = 1
Query:   40 ELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRPAPTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            ELAGKVALVTGA++NIGR+ AL+LAA GAAVA+N R SK DA KVAQEIRAAGGQAE Y+ADI     V  M D ++K+FGR+D LVLNASVR E  F ++S+DEW+    +TLDG+F+C +AC+P +IK GGGAIVTLGGM +LSGAK+R++GSV K GL G TR +A+E G+  IR NC++PG MNT RA  R+ RP  +N+PLGR  E  EIA AVRFL GP +  ++GQ I V+GGQ  F
Sbjct:    5 ELAGKVALVTGASRNIGRSIALALAAAGAAVAVNARTSKEDAGKVAQEIRAAGGQAEAYLADIVDPKAVNAMVDGVVKRFGRLDALVLNASVRKETPFADMSFDEWKSLTSVTLDGSFHCVKACLPHLIKAGGGAIVTLGGMTALSGAKRRVHGSVGKFGLYGMTRALAKELGEHQIRVNCVSPGQMNTARASDRSARPDVSNVPLGRRVEPGEIADAVRFLCGPGSRMISGQLIYVDGGQQQF 248          
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Match: A0A3N5W9J9_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5W9J9_9PROT)

HSP 1 Score: 285 bits (730), Expect = 5.370e-94
Identity = 144/246 (58.54%), Postives = 193/246 (78.46%), Query Frame = 1
Query:   34 GTELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRASKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILVLNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIVTLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTMNTTRAPGRAPRPAPTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQVNGGQMMF 771
            G ELAGKVALVTGAA+NIGRA A +LA  GA VA+N R ++ DAE VA+EIRAAGG+A+V++ADI+ AG V  M   I+K+ G++D+L+LNAS+R E  F+++S++EWR  L ITLDG+F+C +AC+PSMI  GGG+IVTLGGM +LSGAK+R++GSV KHGL G TR +A+E G+ +I  NC+APG MNT RA GR+ R   +N+P+GR  E EE+A+ VR+L  P+A+ ++GQ I V+GGQ MF
Sbjct:    4 GKELAGKVALVTGAARNIGRAIAQALAESGATVAVNARTAQADAEAVAEEIRAAGGKADVFMADIADAGAVHAMVGDIVKRHGKVDLLILNASIRKETAFIDMSFEEWRSLLAITLDGSFHCTKACLPSMIAAGGGSIVTLGGMTALSGAKRRVHGSVGKHGLWGMTRALAKELGEYHINVNCVAPGQMNTARAAGRSARADASNVPMGRRAEPEEVAAMVRYLCTPAAAMVSGQLIYVDGGQQMF 249          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16861.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521WCF3_9CHLR4.880e-13477.25SDR family oxidoreductase n=1 Tax=Dehalococcoidia ... [more]
A0A0S8BRE0_9PROT3.060e-11873.88Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C3JR16_9PROT2.980e-11772.24SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A1F4DLW1_9PROT8.840e-11771.14Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A1F4A5U2_9PROT4.580e-11270.20Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A3N5P791_9PROT3.910e-10562.65SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A7C2Y6D6_9PROT1.940e-10065.16SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A7X1TVV3_9PROT8.970e-9758.98SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A1F4BKN5_9PROT1.110e-9561.48Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5W9J9_9PROT5.370e-9458.54SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16861contigP-wetherbeei_contig16861:3..776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000003_gene5872
PFAMsadh_short_C2
Model size774
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.71e-71
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1R3U8@1224|Proteobacteria,2U1SI@28211|Alphaproteobacteria,3JXX5@41294|Bradyrhizobiaceae
DescriptionKR domain
Cds size774
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.111314-CDS-P-wetherbeei_contig16861:2..7761683186100.111314-CDS-P-wetherbeei_contig16861:2..776Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16861 3..776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16861.1.1prot_P-wetherbeei_contig16861.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16861 3..776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16861.1.1

>prot_P-wetherbeei_contig16861.1.1 ID=prot_P-wetherbeei_contig16861.1.1|Name=mRNA_P-wetherbeei_contig16861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MATTTGGAFVPGTELAGKVALVTGAAKNIGRATALSLAAGGAAVAINTRA
SKYDAEKVAQEIRAAGGQAEVYVADISKAGDVKTMTDAILKKFGRIDILV
LNASVRSEKDFLELSYDEWRLPLGITLDGAFYCAQACIPSMIKNGGGAIV
TLGGMQSLSGAKQRINGSVAKHGLVGFTRGVAREFGDRNIRANCIAPGTM
NTTRAPGRAPRPAPTNIPLGRYGEAEEIASAVRFLAGPSASFLTGQSIQV
NGGQMMF*
back to top

mRNA from alignment at P-wetherbeei_contig16861:3..776-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16861.1.1 ID=mRNA_P-wetherbeei_contig16861.1.1|Name=mRNA_P-wetherbeei_contig16861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig16861:3..776- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAACGACAACAGGCGGCGCATTCGTGCCGGGAACCGAACTCGCAGG CAAAGTCGCGCTCGTCACGGGGGCAGCGAAAAACATTGGGCGCGCAACCG CGCTCTCGCTCGCGGCGGGCGGGGCGGCAGTGGCGATCAACACGCGCGCA TCCAAATACGACGCCGAGAAAGTCGCGCAGGAAATCCGCGCTGCCGGCGG CCAGGCGGAAGTCTACGTCGCCGACATCTCGAAGGCTGGCGACGTCAAGA CCATGACCGATGCCATCCTCAAGAAATTTGGCCGCATCGATATCCTCGTC CTCAACGCATCGGTACGCAGCGAGAAAGACTTCCTCGAACTCTCCTACGA CGAGTGGCGCCTGCCGCTCGGCATTACGCTCGACGGCGCGTTTTACTGCG CACAGGCATGCATTCCGTCGATGATCAAGAACGGCGGCGGCGCGATCGTC ACCCTCGGCGGCATGCAGTCGCTGTCGGGCGCCAAGCAACGCATCAATGG CTCGGTAGCCAAGCACGGGCTGGTCGGCTTCACGCGCGGCGTCGCGCGCG AATTCGGCGACCGCAATATCCGCGCGAACTGCATCGCGCCCGGTACGATG AACACCACGCGCGCTCCCGGTCGCGCCCCGCGCCCCGCGCCGACCAATAT TCCGCTCGGCCGTTACGGTGAAGCGGAGGAAATCGCCAGCGCAGTGCGCT TTCTTGCCGGTCCGAGTGCCAGCTTCCTGACCGGGCAGTCGATCCAGGTC AACGGCGGTCAGATGATGTTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16861:3..776-

>mRNA_P-wetherbeei_contig16861.1.1 ID=mRNA_P-wetherbeei_contig16861.1.1|Name=mRNA_P-wetherbeei_contig16861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig16861:3..776- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAACGACAACAGGCGGCGCATTCGTGCCGGGAACCGAACTCGCAGG
CAAAGTCGCGCTCGTCACGGGGGCAGCGAAAAACATTGGGCGCGCAACCG
CGCTCTCGCTCGCGGCGGGCGGGGCGGCAGTGGCGATCAACACGCGCGCA
TCCAAATACGACGCCGAGAAAGTCGCGCAGGAAATCCGCGCTGCCGGCGG
CCAGGCGGAAGTCTACGTCGCCGACATCTCGAAGGCTGGCGACGTCAAGA
CCATGACCGATGCCATCCTCAAGAAATTTGGCCGCATCGATATCCTCGTC
CTCAACGCATCGGTACGCAGCGAGAAAGACTTCCTCGAACTCTCCTACGA
CGAGTGGCGCCTGCCGCTCGGCATTACGCTCGACGGCGCGTTTTACTGCG
CACAGGCATGCATTCCGTCGATGATCAAGAACGGCGGCGGCGCGATCGTC
ACCCTCGGCGGCATGCAGTCGCTGTCGGGCGCCAAGCAACGCATCAATGG
CTCGGTAGCCAAGCACGGGCTGGTCGGCTTCACGCGCGGCGTCGCGCGCG
AATTCGGCGACCGCAATATCCGCGCGAACTGCATCGCGCCCGGTACGATG
AACACCACGCGCGCTCCCGGTCGCGCCCCGCGCCCCGCGCCGACCAATAT
TCCGCTCGGCCGTTACGGTGAAGCGGAGGAAATCGCCAGCGCAGTGCGCT
TTCTTGCCGGTCCGAGTGCCAGCTTCCTGACCGGGCAGTCGATCCAGGTC
AACGGCGGTCAGATGATGTTCTGA
back to top