mRNA_P-wetherbeei_contig1686.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1686.2.1
Unique NamemRNA_P-wetherbeei_contig1686.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1686.2.1 vs. uniprot
Match: D7G7T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T6_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.120e-15
Identity = 103/321 (32.09%), Postives = 152/321 (47.35%), Query Frame = 2 
Query:  164 TFENPYLAVVSKRLRGLRKKLEKIRKNEALAGTGK-LNEEQKQLLSSRGEVERAIKEADQLRTQLEEVAQKEVEDQAARDEELAKA-------------TAAAPSLLPXXXXXXXXEHAETQTESKERPTADAQVATDLDGPAA------EAALAAATALPPLNTNAQ-MQTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVRAALERLLRLLHVVQRSEGAGIAVPSEVSFLAKVLLGKTVPPELAGFLTCLERSVEAATAYCDDGAAARARTVVHGVTNGDIESAVAGLCASLLAHEVPAPAAP----EFNFFAD 1051
            T  NPYLA +SK+ RGL+KK+EKI+K EAL+ +GK LNEEQ +LL ++  +E A+ E ++++  +E VA+   E + A   +L  A              A       XXXXXX     E      ++P A+  VAT+  G +       EA +    + PP        + +                              +     L ++LRLLHV  R E  G  +P+ V F +KVLLGKT+PP+ A F  CL +SVE A+ Y D    ++   V  GV+   ++  V+ L + ++A   PA AA      FNFF +
Sbjct:   91 TTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEERETAEKAKLLLAPXXXXXXXTGLSIAAXXXXXXXXXXXXXPAPGPEGGGPQDQQPAAEVAVATESVGVSTDLLATEEAEVQTDVSGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSKVLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSK--EVAPGVSYATLDDMVSTLRSQIIAG--PAAAAEGDSAAFNFFGE 407
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BLAST of mRNA_P-wetherbeei_contig1686.2.1 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.450e-14
Identity = 99/335 (29.55%), Postives = 146/335 (43.58%), Query Frame = 2 
Query:  164 TFENPYLAVVSKRLRGLRKKLEKIRKNEALAGTGK-LNEEQKQLLSSRGEVERAIKEADQLRTQLEEVAQKEVEDQAARDEELAKATAAAPSLL-------------------------------PXXXXXXXXEHAETQTE--SKERP-TADAQVATDLDGPAAEAALAAATALPPLNTNAQMQTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVRAALERLLRLLHVVQRSEGAGIAVPSEVSFLAKVLLGKTVPPELAGFLTCLERSVEAATAYCDDGAAARARTVVHGVTNGDIESAVAGLCASLLAHEVPAPAAP----EFNFFAD 1051
            T  NPYLA +SK+ RGL+KK+EKI+K EAL+ +GK LNEEQ +LL ++  +E A+ E ++++  +E VA+   E +AA   +L  A                                       P           ET++   S + P T +A+V TD+ GP            PP       + +                              +     L ++LRLLH   R E  G  +P+ V F +KVLLGKTVPP+ A F  CL +SVE A+ Y D    ++   V  GV+   ++  V+ L + ++A   PA  A      FNFF +
Sbjct:   46 TTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEEREAAEKAKLLLAPXXXXXXXXXXGLSXXXXXXXXXXXXXXXXXXXXXXGGGPQDQQPAAEVAVETESVGVSTDPPATEEAEVQTDVKGP------------PPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIVKGRKEAATGLSKVLRLLHAASRFEAKGQRLPTAVDFFSKVLLGKTVPPDEADFDDCLAQSVERASLYLDPSNGSK--EVAPGVSYATLDDMVSTLRSQIIAG--PAATAEGDSAAFNFFGE 364
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BLAST of mRNA_P-wetherbeei_contig1686.2.1 vs. uniprot
Match: A0A7S3YDL1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDL1_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 8.800e-5
Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:  173 NPYLAVVSKRLRGLRKKLEKIRKNEALAG--TGKLNEEQKQLLSSRGEVERAIKEADQLRTQLEEVAQKEVEDQAARD 400
            N YL ++ K++RGL+KKL+K +K E  +      L+EEQ  LL+S+GE+ER +KE + L+ Q E++A++E E +  +D
Sbjct:   33 NEYLVILYKKIRGLKKKLDKCKKVEERSKKKNPNLHEEQLALLNSKGELERLLKEYESLQEQFEDIAKREYEQEQQKD 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1686.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7T6_ECTSI4.120e-1532.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV56_9PHAE2.450e-1429.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YDL1_HETAK8.800e-542.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1686contigP-wetherbeei_contig1686:2443..4182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7T6
Model size1330
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.87e-16
EggNOG OGs2CXH2@1|root,2RXF1@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_000350.1
Cds size1221
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.0411868-UTR-P-wetherbeei_contig1686:2442..25071683186100.0411868-UTR-P-wetherbeei_contig1686:2442..2507Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1686 2443..2507 +
1683186100.0538552-UTR-P-wetherbeei_contig1686:2729..27731683186100.0538552-UTR-P-wetherbeei_contig1686:2729..2773Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1686 2730..2773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.0698764-CDS-P-wetherbeei_contig1686:2773..29321683186100.0698764-CDS-P-wetherbeei_contig1686:2773..2932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1686 2774..2932 +
1683186100.081206-CDS-P-wetherbeei_contig1686:3120..41821683186100.081206-CDS-P-wetherbeei_contig1686:3120..4182Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1686 3121..4182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1686.2.1prot_P-wetherbeei_contig1686.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1686 2774..4182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1686.2.1

>prot_P-wetherbeei_contig1686.2.1 ID=prot_P-wetherbeei_contig1686.2.1|Name=mRNA_P-wetherbeei_contig1686.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=407bp
MATTDEEAQVAADAALALTFENPYLAVVSKRLRGLRKKLEKIRKNEALAG
TGKLNEEQKQLLSSRGEVERAIKEADQLRTQLEEVAQKEVEDQAARDEEL
AKATAAAPSLLPPPPPPPPPEHAETQTESKERPTADAQVATDLDGPAAEA
ALAAATALPPLNTNAQMQTAAAAAATTAAPPSSAPLAAATSKAAIAAAAA
EAVRAALERLLRLLHVVQRSEGAGIAVPSEVSFLAKVLLGKTVPPELAGF
LTCLERSVEAATAYCDDGAAARARTVVHGVTNGDIESAVAGLCASLLAHE
VPAPAAPEFNFFADVALTPLPPPPASAGTTGAAATGAAAAAAPSGAAPAP
VARTARAIGGVVTAPKAAAVATVPTAAVAAPASADGAEAAGASAKGGSRA
AAPKLQR
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mRNA from alignment at P-wetherbeei_contig1686:2443..4182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1686.2.1 ID=mRNA_P-wetherbeei_contig1686.2.1|Name=mRNA_P-wetherbeei_contig1686.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1740bp|location=Sequence derived from alignment at P-wetherbeei_contig1686:2443..4182+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCGATTTGAAGCACAGCAATTTTCCAAGCGTCGTTCCGTCGCAAGAGG
CGCGCCTCGCACCAGGTCAGTCTATAAATGAGCTTTGCGAGCATAGCGTG
CAGGGCCTCTTTCTACTGCCGGCCCTGTCCCGCGATCCCCGAAACCGGTC
CGCAGCGAGCTTCCGGCAAGCGTTCCTTTTCGAGGGCTGTGCAGGGGTTT
CTAGAGCTCCCGGAGTTCTTCGTGTATGTACTCAGTCGCCGTACTGCTCG
CCAACCATTGCTTTTCTGCAACTAATGGGAATAGCAGGTGGCATGCCTTT
GTGAGGCTCTGGTGTCGGAGGCTTCGAAACAATGGCAACGACGGACGAGG
AAGCGCAGGTAGCCGCCGATGCGGCGCTGGCGTTGACGTTTGAGAACCCC
TACCTGGCGGTAGTGAGCAAACGGCTTCGTGGGCTTCGCAAGAAGCTGGA
GAAGATTCGCAAGAATGAGGCTCTCGCAGGCACCGGCAAAGTGAGTTGTT
TTCCTGTGGTGAGCTCTCATCGAGCCTGAGCTCGCATTCAATTTGCTCGC
CTCTGCCATTGCCTTGGTTTCGTGCTCTCGGTCTGGCGTTGTCGTTTTGG
GAAACCTTACTGTAACAGTCCATTGTCCGGCGTTGGAACCCGCCGGCAAC
GCTTTTCCCCTTCCTTGCTCGTCCACAGCTCAACGAGGAGCAGAAGCAAC
TTCTCAGCAGCCGCGGGGAGGTGGAGCGGGCGATAAAGGAGGCGGATCAG
CTGCGGACGCAGCTGGAGGAGGTTGCCCAGAAGGAGGTGGAGGACCAGGC
CGCCCGCGACGAGGAGCTGGCCAAGGCCACCGCCGCCGCGCCGTCGCTGC
TGCCGCCACCGCCGCCCCCACCGCCGCCGGAGCACGCCGAGACGCAGACG
GAGTCAAAGGAGCGGCCGACTGCAGACGCGCAGGTCGCCACTGACCTCGA
TGGCCCTGCGGCGGAAGCCGCGCTGGCCGCCGCGACAGCCCTCCCGCCTC
TGAACACTAACGCGCAGATGCAGACCGCCGCCGCCGCCGCAGCGACCACC
GCCGCGCCGCCGTCGTCTGCGCCGCTTGCAGCAGCGACATCAAAGGCGGC
TATCGCTGCCGCCGCCGCGGAGGCGGTGCGGGCGGCGCTGGAGCGGCTGT
TGCGGCTACTGCACGTCGTCCAGCGCAGCGAGGGCGCTGGCATCGCCGTC
CCATCGGAGGTGAGCTTCCTCGCCAAGGTGCTGCTGGGCAAGACGGTGCC
GCCTGAGCTCGCCGGCTTTTTGACGTGCCTGGAGCGGTCCGTCGAGGCGG
CAACGGCCTACTGCGACGATGGCGCCGCCGCTCGCGCTCGCACGGTGGTG
CATGGCGTGACCAACGGGGACATTGAGAGCGCCGTGGCGGGGCTCTGCGC
CTCGCTGTTGGCGCACGAGGTCCCCGCGCCGGCGGCGCCCGAGTTCAACT
TCTTCGCCGACGTCGCGCTGACGCCATTGCCACCGCCGCCTGCGTCTGCC
GGAACGACCGGTGCCGCCGCCACGGGAGCGGCGGCGGCGGCGGCCCCGTC
GGGTGCGGCACCGGCGCCGGTTGCGAGGACGGCGCGGGCCATCGGAGGTG
TTGTGACCGCGCCGAAGGCGGCGGCGGTAGCGACAGTGCCGACGGCGGCG
GTGGCGGCGCCGGCGTCCGCCGATGGCGCGGAGGCAGCTGGCGCTTCCGC
GAAGGGAGGCAGCAGGGCAGCCGCACCGAAGCTGCAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1686:2443..4182+

>mRNA_P-wetherbeei_contig1686.2.1 ID=mRNA_P-wetherbeei_contig1686.2.1|Name=mRNA_P-wetherbeei_contig1686.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1221bp|location=Sequence derived from alignment at P-wetherbeei_contig1686:2443..4182+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAACGACGGACGAGGAAGCGCAGGTAGCCGCCGATGCGGCGCTGGC
GTTGACGTTTGAGAACCCCTACCTGGCGGTAGTGAGCAAACGGCTTCGTG
GGCTTCGCAAGAAGCTGGAGAAGATTCGCAAGAATGAGGCTCTCGCAGGC
ACCGGCAAACTCAACGAGGAGCAGAAGCAACTTCTCAGCAGCCGCGGGGA
GGTGGAGCGGGCGATAAAGGAGGCGGATCAGCTGCGGACGCAGCTGGAGG
AGGTTGCCCAGAAGGAGGTGGAGGACCAGGCCGCCCGCGACGAGGAGCTG
GCCAAGGCCACCGCCGCCGCGCCGTCGCTGCTGCCGCCACCGCCGCCCCC
ACCGCCGCCGGAGCACGCCGAGACGCAGACGGAGTCAAAGGAGCGGCCGA
CTGCAGACGCGCAGGTCGCCACTGACCTCGATGGCCCTGCGGCGGAAGCC
GCGCTGGCCGCCGCGACAGCCCTCCCGCCTCTGAACACTAACGCGCAGAT
GCAGACCGCCGCCGCCGCCGCAGCGACCACCGCCGCGCCGCCGTCGTCTG
CGCCGCTTGCAGCAGCGACATCAAAGGCGGCTATCGCTGCCGCCGCCGCG
GAGGCGGTGCGGGCGGCGCTGGAGCGGCTGTTGCGGCTACTGCACGTCGT
CCAGCGCAGCGAGGGCGCTGGCATCGCCGTCCCATCGGAGGTGAGCTTCC
TCGCCAAGGTGCTGCTGGGCAAGACGGTGCCGCCTGAGCTCGCCGGCTTT
TTGACGTGCCTGGAGCGGTCCGTCGAGGCGGCAACGGCCTACTGCGACGA
TGGCGCCGCCGCTCGCGCTCGCACGGTGGTGCATGGCGTGACCAACGGGG
ACATTGAGAGCGCCGTGGCGGGGCTCTGCGCCTCGCTGTTGGCGCACGAG
GTCCCCGCGCCGGCGGCGCCCGAGTTCAACTTCTTCGCCGACGTCGCGCT
GACGCCATTGCCACCGCCGCCTGCGTCTGCCGGAACGACCGGTGCCGCCG
CCACGGGAGCGGCGGCGGCGGCGGCCCCGTCGGGTGCGGCACCGGCGCCG
GTTGCGAGGACGGCGCGGGCCATCGGAGGTGTTGTGACCGCGCCGAAGGC
GGCGGCGGTAGCGACAGTGCCGACGGCGGCGGTGGCGGCGCCGGCGTCCG
CCGATGGCGCGGAGGCAGCTGGCGCTTCCGCGAAGGGAGGCAGCAGGGCA
GCCGCACCGAAGCTGCAGCGG
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