mRNA_P-wetherbeei_contig1686.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1686.4.1
Unique NamemRNA_P-wetherbeei_contig1686.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1686.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1686contigP-wetherbeei_contig1686:4334..5628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1295
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1290
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.9557014-UTR-P-wetherbeei_contig1686:4333..43381683186099.9557014-UTR-P-wetherbeei_contig1686:4333..4338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1686 4334..4338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.9661715-CDS-P-wetherbeei_contig1686:4338..56281683186099.9661715-CDS-P-wetherbeei_contig1686:4338..5628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1686 4339..5628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1686.4.1prot_P-wetherbeei_contig1686.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1686 4339..5628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1686.4.1

>prot_P-wetherbeei_contig1686.4.1 ID=prot_P-wetherbeei_contig1686.4.1|Name=mRNA_P-wetherbeei_contig1686.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=430bp
MAATAVSAAPAALVAAAPAALVAPVVAAAEDLATEASPAMAREAGADRGP
GGRSRRGGDGRGGAGQRQQQPPVVASLPQPPMQPSPSPTGAQPPASSAAA
AATPTPSQAAAPAEPAPLQRHQKRQQANGPASGARSQRHTALLPPSASLP
APGQSQPQPPADAPEQLSQMLPPLPSPLPLQQSLRPPRQPSPALLPEQPS
SQPAPQPAPQPEQQRAASSRQQKRQTASGRRQQQQQQQQQPLRRQQQAPP
QQQHAPSPPSPPTQWSPQRVSPPSASRAPPPGIGVPSEELSPLVPRLSPQ
PVPLPAKDEEAWGVQARAAAAVAPAAVTTGAPVSAYRNEEKEEAAGQETT
AESHGQRHGLPLPLPLPVPAQAGLEQQHQQGQQASPPMSSWSLGEPSVQQ
AAPAPSPPPSELLQYPPAPPHHGQQHYQHP
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mRNA from alignment at P-wetherbeei_contig1686:4334..5628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1686.4.1 ID=mRNA_P-wetherbeei_contig1686.4.1|Name=mRNA_P-wetherbeei_contig1686.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1295bp|location=Sequence derived from alignment at P-wetherbeei_contig1686:4334..5628+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGATGGCGGCGACAGCGGTGTCAGCGGCGCCGGCGGCACTGGTGGCA
GCGGCGCCGGCGGCACTGGTGGCGCCGGTAGTGGCAGCGGCAGAGGATCT
TGCGACCGAGGCATCGCCAGCGATGGCCCGGGAGGCGGGGGCCGACCGAG
GACCCGGCGGCCGCAGCCGGAGAGGCGGGGATGGCCGAGGGGGGGCAGGG
CAGCGGCAACAACAGCCCCCGGTTGTGGCGTCACTGCCGCAACCGCCGAT
GCAGCCTTCGCCATCACCGACGGGAGCTCAGCCGCCGGCTTCATCGGCGG
CAGCGGCCGCGACGCCGACGCCGTCGCAGGCGGCGGCGCCGGCCGAGCCC
GCTCCGTTGCAGCGGCACCAAAAGCGGCAGCAGGCCAACGGACCGGCATC
GGGTGCAAGGTCACAGCGGCATACCGCTCTGCTGCCACCGTCAGCTTCCT
TGCCGGCCCCAGGTCAGTCTCAGCCGCAGCCGCCTGCGGACGCACCGGAG
CAGCTGAGTCAGATGCTGCCGCCGCTACCATCGCCGCTGCCGCTGCAGCA
GTCGCTCCGGCCGCCGCGGCAGCCGTCGCCAGCGCTGCTGCCGGAGCAGC
CTTCGTCGCAGCCGGCGCCGCAGCCGGCGCCGCAGCCGGAGCAGCAGCGG
GCCGCATCGTCGCGCCAGCAAAAGCGACAAACTGCATCGGGGCGGCGCCA
GCAGCAACAACAACAGCAGCAGCAGCCGCTGCGGCGGCAGCAGCAGGCGC
CGCCGCAGCAGCAACACGCGCCGTCGCCGCCATCCCCGCCGACGCAGTGG
TCACCGCAGCGGGTGTCGCCGCCATCGGCGTCACGTGCGCCGCCGCCTGG
CATTGGGGTGCCGAGCGAAGAGCTGTCGCCGCTAGTGCCACGCCTGTCGC
CGCAGCCGGTGCCTCTCCCCGCAAAGGACGAAGAGGCCTGGGGCGTGCAG
GCAAGGGCGGCGGCGGCCGTGGCGCCTGCGGCGGTAACGACGGGAGCGCC
AGTGTCGGCGTACCGCAATGAGGAGAAGGAGGAGGCTGCGGGGCAGGAGA
CGACAGCGGAGTCGCACGGACAGCGCCACGGCCTTCCTCTGCCGCTGCCG
CTGCCGGTCCCGGCGCAGGCCGGCCTGGAGCAGCAGCACCAGCAAGGGCA
GCAAGCGAGCCCGCCGATGTCTTCCTGGTCGCTGGGGGAGCCGTCTGTCC
AGCAGGCGGCGCCAGCGCCGTCGCCGCCACCTTCGGAGCTGTTGCAGTAC
CCGCCGGCGCCGCCTCATCACGGCCAACAGCACTACCAGCACCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1686:4334..5628+

>mRNA_P-wetherbeei_contig1686.4.1 ID=mRNA_P-wetherbeei_contig1686.4.1|Name=mRNA_P-wetherbeei_contig1686.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig1686:4334..5628+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGACAGCGGTGTCAGCGGCGCCGGCGGCACTGGTGGCAGCGGC
GCCGGCGGCACTGGTGGCGCCGGTAGTGGCAGCGGCAGAGGATCTTGCGA
CCGAGGCATCGCCAGCGATGGCCCGGGAGGCGGGGGCCGACCGAGGACCC
GGCGGCCGCAGCCGGAGAGGCGGGGATGGCCGAGGGGGGGCAGGGCAGCG
GCAACAACAGCCCCCGGTTGTGGCGTCACTGCCGCAACCGCCGATGCAGC
CTTCGCCATCACCGACGGGAGCTCAGCCGCCGGCTTCATCGGCGGCAGCG
GCCGCGACGCCGACGCCGTCGCAGGCGGCGGCGCCGGCCGAGCCCGCTCC
GTTGCAGCGGCACCAAAAGCGGCAGCAGGCCAACGGACCGGCATCGGGTG
CAAGGTCACAGCGGCATACCGCTCTGCTGCCACCGTCAGCTTCCTTGCCG
GCCCCAGGTCAGTCTCAGCCGCAGCCGCCTGCGGACGCACCGGAGCAGCT
GAGTCAGATGCTGCCGCCGCTACCATCGCCGCTGCCGCTGCAGCAGTCGC
TCCGGCCGCCGCGGCAGCCGTCGCCAGCGCTGCTGCCGGAGCAGCCTTCG
TCGCAGCCGGCGCCGCAGCCGGCGCCGCAGCCGGAGCAGCAGCGGGCCGC
ATCGTCGCGCCAGCAAAAGCGACAAACTGCATCGGGGCGGCGCCAGCAGC
AACAACAACAGCAGCAGCAGCCGCTGCGGCGGCAGCAGCAGGCGCCGCCG
CAGCAGCAACACGCGCCGTCGCCGCCATCCCCGCCGACGCAGTGGTCACC
GCAGCGGGTGTCGCCGCCATCGGCGTCACGTGCGCCGCCGCCTGGCATTG
GGGTGCCGAGCGAAGAGCTGTCGCCGCTAGTGCCACGCCTGTCGCCGCAG
CCGGTGCCTCTCCCCGCAAAGGACGAAGAGGCCTGGGGCGTGCAGGCAAG
GGCGGCGGCGGCCGTGGCGCCTGCGGCGGTAACGACGGGAGCGCCAGTGT
CGGCGTACCGCAATGAGGAGAAGGAGGAGGCTGCGGGGCAGGAGACGACA
GCGGAGTCGCACGGACAGCGCCACGGCCTTCCTCTGCCGCTGCCGCTGCC
GGTCCCGGCGCAGGCCGGCCTGGAGCAGCAGCACCAGCAAGGGCAGCAAG
CGAGCCCGCCGATGTCTTCCTGGTCGCTGGGGGAGCCGTCTGTCCAGCAG
GCGGCGCCAGCGCCGTCGCCGCCACCTTCGGAGCTGTTGCAGTACCCGCC
GGCGCCGCCTCATCACGGCCAACAGCACTACCAGCACCCG
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